genome.fa.s11.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  99  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31336901--31337020	56	2.1	56	98	0	231	44	8	24	23	1.80
31338155--31338339	40	4.6	39	80	6	194	24	22	27	25	2.00
31338202--31338372	79	2.2	79	80	12	199	28	19	26	25	1.99
31340489--31340563	31	2.4	31	88	0	114	28	29	14	28	1.95
31340587--31340678	42	2.2	42	92	0	148	34	21	14	29	1.93
31340823--31340920	26	3.8	26	89	1	144	28	22	21	27	1.99
31340823--31340920	52	1.9	51	93	2	169	28	22	21	27	1.99
31341359--31341398	16	2.4	17	91	4	64	20	35	30	15	1.93
31341739--31341821	27	3.1	28	88	8	120	24	26	19	30	1.98
31341969--31342097	27	4.8	27	80	4	136	29	8	20	41	1.82
31341972--31342111	54	2.6	54	80	4	174	30	7	22	40	1.82
31341887--31342138	27	9.3	27	75	6	114	32	7	20	39	1.80
31342090--31342273	27	6.8	27	89	0	242	40	7	23	29	1.81
31342063--31342273	81	2.6	81	83	0	188	39	7	22	30	1.82
31342280--31342368	27	3.3	27	84	3	108	33	10	15	40	1.81
31344591--31344669	31	2.5	31	89	0	122	27	27	15	29	1.96
31344693--31344784	42	2.2	42	88	0	130	36	20	13	29	1.90
31344929--31345081	26	5.8	26	82	8	184	29	22	19	28	1.98
31344929--31345081	55	2.9	52	89	6	236	29	22	19	28	1.98
31345889--31345967	27	2.9	27	92	3	124	22	26	20	30	1.98
31346007--31346217	27	7.7	27	78	4	163	32	9	18	40	1.81
31346064--31346231	54	3.1	54	82	5	196	31	9	20	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31346064--31346574	27	18.9	27	83	4	170	34	7	22	34	1.83
31346208--31346474	54	4.9	54	90	0	363	37	5	26	30	1.79
31346210--31346474	81	3.3	81	89	0	377	37	5	26	30	1.79
31346499--31346583	27	3.1	27	83	6	84	34	9	16	40	1.81
31351475--31351603	49	2.6	49	84	6	163	23	19	29	27	1.98
31351426--31351613	49	3.9	48	76	9	150	26	19	28	26	1.98
31360499--31360594	42	2.3	43	81	5	115	28	17	21	32	1.96
31363653--31363750	29	3.4	29	79	5	103	31	30	11	26	1.91
31363817--31363867	19	2.7	19	76	11	61	19	35	19	25	1.95
31363974--31364024	8	6.4	8	77	8	59	7	21	21	49	1.75
31363974--31364024	24	2.1	24	88	0	75	7	21	21	49	1.75
31368180--31368294	29	4.0	28	81	8	133	28	28	13	28	1.95
31368171--31368281	29	3.9	29	82	5	136	28	28	14	27	1.95
31368511--31368555	8	5.6	8	81	0	54	6	22	20	51	1.70
31374967--31375114	43	3.5	42	82	8	174	25	17	22	33	1.96
31382244--31382489	49	4.9	50	80	2	262	28	25	18	27	1.98
31382306--31382486	100	1.8	101	88	1	283	28	25	19	26	1.99
31383587--31383613	13	2.1	13	100	0	54	29	22	7	40	1.81
31387485--31387730	49	4.9	50	80	2	262	28	25	18	27	1.98
31387547--31387727	100	1.8	101	88	1	283	28	25	19	26	1.99
31391338--31391439	38	2.7	38	96	0	186	33	26	21	18	1.96
31394923--31394951	3	9.7	3	100	0	58	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31405205--31405429	40	5.7	40	86	5	278	25	28	21	24	1.99
31405207--31405429	119	1.9	120	84	6	301	25	28	21	24	1.99
31406555--31406674	56	2.1	56	96	0	222	22	22	9	45	1.80
31413077--31413301	40	5.7	40	86	5	269	25	28	21	24	1.99
31413079--31413301	119	1.9	120	83	6	292	25	27	21	24	1.99
31414405--31414524	56	2.1	56	96	0	222	23	22	9	45	1.81
31417863--31417931	28	2.4	29	87	2	95	27	13	31	27	1.93
31418256--31418327	27	2.7	27	80	0	81	34	26	11	27	1.90
31425057--31425115	20	2.9	19	75	9	64	64	1	10	23	1.34
31430275--31430421	40	3.7	40	83	5	120	25	27	21	25	2.00
31430321--31430501	80	2.3	80	83	9	219	27	27	20	23	1.99
31430318--31430501	40	4.6	40	81	7	196	28	27	20	23	1.99
31438104--31438210	40	2.7	40	84	5	119	25	27	21	26	1.99
31438147--31438277	40	3.3	39	83	4	163	29	27	19	23	1.99
31438110--31438323	80	2.7	80	77	7	195	27	26	20	25	1.99
31438150--31438323	80	2.2	80	80	10	196	28	27	20	24	1.99
31445326--31445587	41	6.4	41	94	1	454	32	21	27	19	1.97
31446203--31446251	24	2.0	24	96	0	89	53	2	4	40	1.32
31446538--31446586	14	3.4	14	86	5	62	20	2	26	51	1.59
31446533--31446586	7	7.6	7	77	4	54	22	1	24	51	1.57
31446605--31446649	14	3.2	14	93	0	72	15	0	46	37	1.46
31446611--31446652	21	2.0	21	95	0	75	14	0	50	35	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31446807--31446873	14	4.7	14	81	3	80	40	2	16	40	1.64
31447328--31447372	15	2.8	17	77	16	51	55	2	2	40	1.24
31450386--31450416	15	2.0	16	93	6	55	51	3	6	38	1.44
31451713--31451755	22	1.9	23	85	4	61	58	4	0	37	1.19
31451790--31452060	43	6.3	43	82	1	319	25	18	27	28	1.98
31456753--31456986	55	4.4	54	77	9	216	22	23	16	37	1.93
31462509--31462539	16	1.9	16	93	0	53	35	22	0	41	1.54
31462778--31462985	55	3.8	53	80	7	231	22	25	17	35	1.95
31468010--31468081	30	2.4	30	86	4	92	33	6	1	58	1.33
31471180--31471457	133	2.1	133	85	0	376	28	16	26	28	1.97
31471415--31471501	44	2.0	44	82	8	106	28	14	27	28	1.96
31473380--31473436	30	1.9	29	92	3	96	31	5	1	61	1.28
31475067--31475163	34	2.8	34	81	6	106	23	23	22	29	1.99
31499751--31499859	23	4.8	23	80	3	114	26	22	15	34	1.94
31499751--31499873	45	2.7	46	82	8	137	26	22	17	32	1.97
31505512--31505570	18	3.3	18	75	13	59	76	0	11	11	1.03
31507079--31507139	22	2.7	23	82	10	81	63	1	4	29	1.24
31528565--31528679	38	3.0	38	85	2	158	19	21	26	32	1.97
31540032--31540204	46	3.7	46	79	13	219	21	20	27	29	1.98
31540029--31540199	93	1.8	93	97	0	324	21	21	28	28	1.98
31547622--31547794	46	3.8	45	77	11	190	21	20	27	30	1.98
31547619--31547789	93	1.8	93	92	2	290	21	20	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31555099--31555151	23	2.3	24	87	9	76	28	28	15	28	1.96
31566635--31566768	18	7.4	18	79	3	117	34	13	12	39	1.83
31566621--31566768	36	4.1	36	78	0	143	34	13	12	39	1.83
31566633--31566768	54	2.5	54	80	0	155	33	13	12	39	1.83
31566936--31566960	12	2.1	12	100	0	50	48	20	16	16	1.82
31579461--31579729	46	5.8	46	76	14	266	23	20	28	28	1.99
31579510--31579675	47	3.6	47	80	14	225	24	19	28	27	1.98
31579458--31579722	93	2.8	93	95	0	467	23	20	28	27	1.99
31594345--31594379	16	2.2	16	89	0	52	80	11	0	8	0.92
31607786--31607818	12	2.7	13	90	9	52	84	0	15	0	0.61
31608876--31609855	180	5.5	175	80	5	1024	31	17	23	27	1.97
31608876--31609749	176	4.9	175	82	5	992	30	17	24	27	1.97
31608932--31609779	356	2.4	356	91	1	1351	30	17	24	27	1.97
31610012--31610043	16	2.0	16	93	0	55	81	9	0	9	0.88
31613731--31613891	54	2.9	54	79	9	171	43	18	22	15	1.87
31615031--31615112	43	1.9	43	82	9	105	30	14	26	28	1.95
31615089--31615154	33	2.0	33	100	0	132	45	12	21	21	1.84
31614938--31615328	210	1.9	210	90	1	622	33	18	23	24	1.97
31615192--31615455	90	3.0	88	66	11	214	31	17	25	26	1.97
31615122--31615598	178	2.7	176	81	6	559	32	17	23	26	1.96
31619236--31619293	24	2.4	24	94	0	98	41	17	6	34	1.76
31626190--31626377	40	4.7	40	85	3	227	26	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31628448--31628591	46	3.1	46	87	2	191	41	15	23	19	1.89
31628846--31628892	25	2.0	25	83	8	62	53	4	14	27	1.60
31631518--31631588	35	2.0	35	94	0	124	43	5	5	45	1.51
31637901--31638017	57	2.1	57	93	0	198	37	6	27	28	1.82
31643800--31643897	35	2.8	36	76	14	89	61	1	1	36	1.10
31644518--31644582	8	8.0	8	72	16	53	64	1	0	33	1.03
31644518--31644591	16	4.6	16	71	14	53	64	1	0	33	1.02
31646728--31646761	17	1.9	18	88	5	52	35	5	20	38	1.77
31649201--31649280	20	4.0	20	73	0	70	42	22	22	12	1.87
31649199--31649277	40	2.0	40	82	0	95	41	21	22	13	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352