genome.fa.s11.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  101  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32093072--32093161	41	2.2	42	83	2	110	32	27	20	20	1.97
32098273--32098312	15	2.5	16	84	8	55	52	12	2	32	1.52
32098698--32098736	13	3.0	13	100	0	78	15	30	38	15	1.88
32102434--32102585	27	5.6	27	93	3	241	30	28	13	26	1.94
32102434--32102585	55	2.8	55	94	0	259	30	28	13	26	1.94
32108690--32108861	93	1.8	93	91	0	281	27	29	20	22	1.98
32108683--32108858	46	3.8	46	77	10	178	28	29	20	21	1.98
32108734--32108877	46	3.1	45	72	21	120	29	29	19	22	1.98
32111187--32111274	29	3.0	29	80	8	97	56	15	17	10	1.66
32111187--32111265	15	5.4	15	77	10	83	58	13	17	10	1.63
32111198--32111274	15	5.2	15	75	9	77	55	15	16	11	1.68
32114190--32114361	93	1.8	93	91	0	281	29	29	20	20	1.98
32114183--32114358	46	3.8	46	78	10	178	30	28	20	20	1.98
32121895--32122046	42	3.5	43	71	13	116	32	25	15	26	1.96
32126483--32126656	48	3.7	46	83	6	206	26	18	29	25	1.98
32126483--32126656	94	1.8	95	88	1	269	26	18	29	25	1.98
32126486--32126748	48	5.6	47	78	10	177	26	19	29	25	1.98
32131040--32131151	27	4.1	27	81	12	122	15	24	23	37	1.93
32131037--32131151	54	2.1	54	85	3	151	14	24	23	37	1.93
32137091--32137853	47	16.1	47	87	4	1014	34	12	28	24	1.92
32137827--32137917	46	2.0	46	86	0	128	32	9	30	26	1.89
32139974--32140076	37	2.8	37	92	2	163	24	31	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32140217--32140458	48	5.0	48	91	0	367	31	26	6	35	1.81
32147039--32147359	46	6.8	47	73	11	180	25	30	17	25	1.97
32155039--32155159	46	2.6	45	80	5	127	29	17	29	23	1.97
32155131--32155304	44	3.7	48	79	9	196	23	20	29	27	1.99
32157455--32157479	13	1.9	13	100	0	50	40	24	4	32	1.73
32158963--32159109	37	4.0	37	95	0	249	26	31	18	23	1.97
32159317--32159501	47	3.9	47	91	0	289	26	28	11	33	1.92
32159410--32159485	22	3.3	22	67	16	64	25	27	13	34	1.93
32162912--32162984	6	11.8	6	69	16	51	49	13	17	19	1.80
32162912--32162984	31	2.4	31	88	0	101	49	13	17	19	1.80
32163405--32163736	27	12.3	27	86	1	461	25	21	19	34	1.96
32163718--32163794	27	2.9	27	92	0	127	24	5	25	44	1.75
32163848--32164127	27	10.4	27	91	0	425	41	8	21	27	1.83
32163840--32164171	27	12.3	27	88	1	369	39	8	21	31	1.83
32164109--32164196	27	3.2	28	78	12	69	30	9	20	39	1.83
32172401--32172522	44	2.8	43	76	6	122	22	17	27	33	1.96
32178528--32178964	50	8.9	50	84	4	548	29	19	27	23	1.98
32179951--32180059	27	4.0	26	83	8	119	35	23	23	16	1.95
32179951--32180059	54	2.0	54	87	3	157	35	23	23	16	1.95
32186272--32186381	42	2.6	43	78	7	127	26	19	23	30	1.98
32186217--32186370	43	3.6	42	74	11	125	25	18	23	32	1.97
32186233--32186389	43	3.7	43	74	7	149	25	19	24	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32190568--32190743	87	2.0	87	94	0	307	27	20	31	19	1.97
32211282--32211386	42	2.5	42	90	3	158	13	27	32	26	1.94
32218169--32218281	50	2.4	49	84	10	137	26	16	29	27	1.97
32219783--32219834	23	2.2	24	83	10	63	38	0	25	36	1.56
32221263--32221326	24	2.7	23	73	7	58	32	17	23	26	1.96
32226550--32226711	56	2.9	56	88	0	243	31	23	14	30	1.94
32234409--32234453	22	2.0	22	100	0	90	55	13	0	31	1.38
32239915--32239948	17	2.1	16	89	10	52	38	0	5	55	1.24
32247239--32247291	27	2.0	27	88	0	79	41	16	9	32	1.81
32247416--32247475	27	2.2	27	84	0	75	16	21	21	40	1.92
32247589--32247685	28	3.3	28	72	16	70	21	21	27	28	1.99
32247612--32247682	33	2.1	34	84	2	90	21	21	30	26	1.98
32252005--32252067	23	3.2	18	72	22	54	17	6	0	76	0.99
32252023--32252063	12	3.6	11	84	15	57	17	7	0	75	1.02
32252168--32252213	3	15.3	3	90	0	56	23	0	8	67	1.18
32252237--32252303	27	2.4	28	75	9	66	22	10	4	62	1.45
32253773--32253878	42	2.5	43	80	10	119	23	17	25	33	1.97
32262479--32262563	40	2.2	40	84	2	109	28	31	22	17	1.97
32262634--32262742	47	2.4	45	86	7	139	28	28	10	33	1.89
32265291--32265331	20	2.0	20	85	9	55	46	17	7	29	1.74
32266558--32266833	40	6.9	40	90	0	390	28	29	21	21	1.98
32266874--32266965	38	2.4	38	83	0	112	25	25	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32269424--32269508	40	2.2	40	84	2	109	28	31	22	17	1.97
32269579--32269687	47	2.4	45	83	7	130	28	27	10	33	1.89
32272237--32272277	20	2.0	20	85	9	55	46	17	7	29	1.74
32273046--32273204	43	3.7	43	78	9	164	24	18	25	31	1.97
32277111--32277214	47	2.2	48	84	8	133	21	28	20	29	1.98
32292916--32293154	49	4.8	49	76	5	221	30	26	17	25	1.97
32308727--32308790	31	2.1	31	90	0	101	25	23	15	35	1.94
32309005--32309123	23	5.1	23	91	1	193	31	21	20	27	1.98
32309174--32309240	20	3.3	20	91	0	107	32	22	11	32	1.90
32316997--32317118	23	5.5	23	88	6	162	32	23	18	25	1.97
32316997--32317118	45	2.7	45	86	6	160	32	23	18	25	1.97
32317183--32317243	19	3.0	20	85	7	88	34	21	11	32	1.89
32319362--32319533	93	1.8	93	88	0	263	30	27	19	22	1.98
32319358--32319530	46	3.7	46	77	13	174	31	26	19	22	1.98
32326389--32326559	93	1.8	93	86	2	245	29	26	20	23	1.99
32326430--32326564	46	2.9	45	74	12	123	29	25	20	24	1.99
32326982--32327041	30	2.0	30	90	0	93	30	25	8	36	1.85
32328314--32328338	13	1.9	13	100	0	50	8	16	44	32	1.76
32333978--32334035	30	2.0	29	93	3	98	25	13	24	36	1.92
32343873--32344243	180	2.1	181	97	0	708	34	5	19	40	1.76
32344362--32344399	20	1.9	20	88	0	58	23	31	31	13	1.93
32344841--32344889	25	2.0	25	95	0	89	36	8	24	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32354573--32354632	27	2.3	26	85	2	75	35	20	23	21	1.96
32354594--32354657	33	2.0	32	84	3	83	35	20	23	20	1.96
32354673--32354724	27	2.0	26	84	3	68	34	21	26	17	1.95
32373357--32373401	20	2.2	20	88	4	63	44	13	8	33	1.75
32373366--32373405	20	2.0	20	100	0	80	40	15	10	35	1.80
32379154--32379341	94	2.0	94	92	0	313	30	10	19	39	1.85
32379371--32379432	24	2.6	24	87	2	81	20	16	29	33	1.94
32386855--32387136	94	3.0	94	94	0	483	30	10	19	39	1.85
32394304--32394679	94	4.0	94	93	0	644	29	10	19	40	1.85
32394708--32394771	24	2.7	24	87	4	85	20	15	31	32	1.94
32412308--32412349	21	2.0	20	86	4	57	26	7	16	50	1.71
32416458--32416524	33	2.0	33	97	0	125	31	14	10	43	1.80
32417817--32417850	14	2.4	14	90	9	52	44	29	0	26	1.55
32426802--32426876	34	2.2	34	81	9	91	29	22	20	28	1.98
32427350--32427470	54	2.2	54	83	0	152	25	20	14	38	1.91
32427350--32427470	27	4.5	27	78	2	127	25	20	14	38	1.91
32429871--32429937	28	2.3	30	80	14	77	26	23	1	47	1.60
32438908--32439083	46	3.8	46	77	14	200	20	19	29	30	1.97
32438905--32439076	93	1.8	93	93	2	301	20	20	29	29	1.98
32476954--32476996	17	2.4	18	84	7	52	62	0	2	34	1.08
32477052--32477089	19	2.0	19	85	10	51	60	0	5	34	1.19
32480277--32480441	43	3.8	43	72	9	156	30	25	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32483473--32483563	46	2.0	46	91	0	146	27	30	7	34	1.85
32483537--32483680	47	3.1	47	85	2	164	26	28	11	34	1.90
32485311--32485353	14	3.1	14	86	6	61	60	9	0	30	1.28
32485311--32485349	13	2.9	13	92	3	60	61	10	0	28	1.28
32486769--32487121	40	8.9	40	88	0	494	28	28	20	22	1.99
32488615--32488703	46	1.9	46	90	0	142	25	31	8	33	1.87
32488679--32488822	47	3.1	47	85	4	157	26	28	10	34	1.89
32490451--32490493	14	3.1	14	86	6	61	60	9	0	30	1.28
32490451--32490489	13	2.9	13	92	3	60	61	10	0	28	1.28
32491909--32492263	40	8.9	40	87	1	487	28	29	20	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352