genome.fa.s11.2.7.7.80.10.50.1000.338.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  338  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108292653--108292724	27	2.7	27	97	0	135	30	33	20	15	1.94
108293941--108294002	18	3.6	18	72	18	60	58	3	0	38	1.15
108299283--108299316	16	2.1	16	88	0	50	41	23	11	23	1.87
108315683--108315851	87	1.9	87	94	4	297	30	22	15	31	1.95
108317925--108317953	14	2.0	15	93	6	51	27	24	0	48	1.51
108322905--108322956	16	3.2	16	77	0	59	17	21	1	59	1.47
108323512--108323542	14	2.1	15	94	5	55	25	25	0	48	1.52
108324293--108324346	11	5.0	11	86	4	74	18	46	5	29	1.72
108324885--108324957	18	4.1	18	85	0	101	32	19	12	35	1.89
108325268--108325302	14	2.5	14	100	0	70	45	11	17	25	1.81
108328981--108329034	11	5.0	11	81	4	65	18	44	5	31	1.73
108329665--108329723	29	2.0	29	100	0	118	40	0	30	28	1.57
108331807--108331852	23	2.0	23	100	0	92	26	43	17	13	1.85
108333053--108333354	151	2.0	151	98	0	577	30	18	20	30	1.96
108334033--108334136	51	2.0	51	92	3	174	50	5	17	26	1.69
108338281--108338447	87	1.9	87	90	2	264	31	20	15	31	1.94
108338517--108338818	153	2.0	153	88	1	453	37	17	20	24	1.94
108340012--108340052	21	2.0	21	90	4	66	19	36	2	41	1.65
108340642--108340672	14	2.1	15	94	5	55	25	25	0	48	1.52
108342834--108342867	17	2.0	17	94	0	59	44	50	0	5	1.26
108343865--108343898	17	2.0	17	94	0	59	44	50	0	5	1.26
108346645--108346676	7	4.6	7	100	0	64	87	0	0	12	0.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108353716--108353747	5	6.6	5	96	3	57	18	0	0	81	0.70
108360208--108360243	18	2.0	18	100	0	72	33	16	27	22	1.95
108374481--108374591	57	1.9	58	90	1	179	28	29	18	22	1.98
108374490--108374588	29	3.5	28	71	9	83	30	27	20	22	1.98
108377417--108377443	4	6.8	4	100	0	54	48	0	0	51	1.00
108379133--108379200	12	5.7	11	74	16	55	16	1	7	75	1.10
108379131--108379200	26	2.9	23	75	20	72	17	1	7	74	1.11
108379133--108379202	24	2.9	24	72	21	65	15	2	7	74	1.16
108391444--108391503	29	2.1	29	100	0	120	23	26	16	33	1.96
108393092--108393166	39	1.9	39	91	0	123	30	12	17	40	1.86
108410358--108410450	18	5.2	18	84	0	123	32	13	23	30	1.94
108410358--108410450	36	2.6	36	91	0	150	32	13	23	30	1.94
108413115--108413144	14	2.1	14	93	0	51	36	0	0	63	0.95
108416438--108416463	12	2.2	12	100	0	52	38	26	15	19	1.91
108423275--108423332	3	19.3	3	85	7	64	65	6	1	25	1.27
108423384--108423502	3	39.7	3	72	9	82	62	4	5	28	1.35
108423409--108423493	20	4.3	20	83	1	82	64	5	2	27	1.28
108423422--108423502	17	4.8	17	75	11	69	66	3	2	27	1.21
108423416--108423502	23	3.9	21	76	11	75	66	4	2	26	1.23
108423416--108423521	9	11.2	9	73	16	54	66	4	2	25	1.24
108426462--108426532	37	1.9	37	85	0	97	30	21	19	28	1.97
108436633--108436669	15	2.3	17	86	9	51	21	27	0	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108450827--108450871	22	2.0	22	100	0	90	42	17	4	35	1.70
108457097--108457171	18	4.2	18	87	0	96	28	22	16	33	1.95
108473434--108473488	27	2.0	27	89	0	83	29	18	21	30	1.97
108476089--108476159	31	2.3	32	85	7	101	42	8	8	40	1.66
108476291--108476325	4	8.8	4	100	0	70	25	74	0	0	0.82
108480496--108480575	37	2.1	38	95	4	153	37	2	15	45	1.59
108487618--108487677	12	5.1	12	76	11	52	75	1	3	20	1.04
108491232--108491288	30	1.9	30	85	3	80	42	1	24	31	1.65
108491500--108491531	13	2.5	13	94	0	55	31	0	12	56	1.37
108491626--108491867	50	4.7	50	86	4	297	26	24	29	19	1.99
108491626--108491875	100	2.4	103	88	6	364	26	24	29	20	1.99
108498812--108498869	30	1.9	30	89	0	89	41	3	24	31	1.71
108499081--108499112	13	2.5	13	94	0	55	31	0	12	56	1.37
108499207--108499448	50	4.7	50	86	4	297	26	24	29	19	1.99
108499207--108499456	100	2.4	103	88	6	364	26	24	29	20	1.99
108505097--108505179	42	2.0	42	100	0	166	48	16	7	27	1.73
108512103--108512206	16	7.0	16	70	27	70	36	13	20	29	1.91
108512103--108512149	17	2.8	17	87	9	62	36	14	21	27	1.93
108515797--108515848	13	4.0	13	79	0	59	38	25	5	30	1.79
108521114--108521171	28	2.1	28	96	0	107	39	3	22	34	1.71
108522341--108522448	26	4.2	26	96	0	189	29	5	26	37	1.79
108529382--108529462	26	3.2	26	98	1	155	30	7	25	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108535372--108535448	22	3.7	21	75	14	61	42	15	6	35	1.73
108535401--108535479	35	2.2	37	86	13	121	35	16	10	37	1.82
108535422--108535477	17	3.5	15	88	9	60	35	16	10	37	1.83
108535408--108535479	19	3.9	19	89	10	123	36	15	11	37	1.83
108535836--108536103	45	5.9	45	76	10	251	26	26	15	31	1.96
108535836--108536029	45	4.3	45	86	2	266	24	27	14	33	1.95
108535838--108536013	89	2.0	89	89	2	273	25	27	15	31	1.95
108536042--108536337	78	3.8	78	90	1	477	25	23	19	31	1.98
108536409--108536702	78	3.8	78	88	1	419	26	25	17	30	1.97
108535933--108536848	365	2.5	365	89	3	1349	25	24	17	32	1.97
108537935--108537961	11	2.5	11	100	0	54	7	0	0	92	0.38
108547894--108547932	18	2.1	19	85	4	53	30	23	0	46	1.53
108548340--108548466	45	2.8	45	97	0	236	40	23	18	17	1.90
108548863--108548912	15	3.2	16	75	13	52	38	22	0	40	1.54
108549110--108549218	16	6.7	17	67	20	56	36	19	0	43	1.57
108553543--108553577	18	2.0	18	88	5	54	68	0	0	31	0.90
108553833--108553875	22	1.9	23	85	4	61	46	13	4	34	1.65
108553867--108553940	19	3.9	19	96	3	141	36	16	10	36	1.83
108553844--108553940	37	2.5	37	88	10	122	38	16	9	36	1.81
108553860--108553940	37	2.2	38	91	8	141	35	17	9	37	1.83
108553870--108553949	37	2.2	37	88	6	110	38	13	12	35	1.83
108554058--108554098	21	2.0	20	85	4	55	12	2	14	70	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108569503--108569561	24	2.5	24	94	0	100	27	13	10	49	1.74
108571778--108571828	20	2.6	19	84	9	66	19	0	3	76	0.94
108571791--108571830	6	6.3	6	91	5	53	20	0	2	77	0.88
108571786--108571833	20	2.7	17	77	20	53	20	0	2	77	0.88
108571778--108571828	13	3.8	13	82	10	59	19	0	3	76	0.94
108574365--108574428	21	3.0	21	81	0	83	20	20	9	50	1.75
108577586--108577619	11	3.1	11	82	0	50	61	11	11	14	1.56
108591692--108591833	27	5.3	26	85	4	140	35	21	23	18	1.95
108591692--108591831	54	2.6	54	85	2	156	35	21	24	18	1.95
108593451--108593560	26	4.2	26	97	0	184	36	24	5	33	1.79
108599406--108599440	18	1.9	18	94	0	61	34	14	14	37	1.86
108604689--108604761	36	2.0	36	100	0	146	30	21	16	31	1.95
108607543--108607568	6	4.3	6	100	0	52	19	0	0	80	0.71
108608015--108608039	13	1.9	13	100	0	50	32	16	4	48	1.64
108615532--108615565	17	2.0	17	94	0	59	44	50	0	5	1.26
108620172--108620205	17	2.0	17	94	0	59	44	50	0	5	1.26
108625571--108625644	18	4.1	18	87	0	103	28	17	16	37	1.91
108630572--108630873	153	2.0	153	85	1	408	38	16	20	24	1.93
108635413--108635461	20	2.5	20	86	3	64	28	0	8	63	1.23
108635634--108635670	18	2.1	18	89	0	56	45	10	5	37	1.62
108639432--108639489	25	2.3	23	78	16	62	70	6	1	20	1.19
108640740--108640795	21	2.7	21	91	0	94	25	8	37	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108641817--108641852	19	1.9	19	94	5	65	38	13	19	27	1.90
108644104--108644268	82	2.0	82	96	0	303	38	18	14	28	1.90
108647413--108647444	15	2.1	16	94	5	57	68	3	0	28	1.04
108650320--108650362	21	2.0	22	90	4	70	58	4	0	37	1.19
108650418--108650477	20	2.9	20	76	13	68	55	5	5	35	1.44
108650385--108650528	23	6.1	22	70	15	74	53	6	4	35	1.48
108650428--108650527	25	4.1	25	76	6	100	53	6	6	35	1.50
108650699--108650825	12	10.7	12	71	21	65	60	4	2	32	1.30
108650700--108650783	24	3.6	24	75	18	72	60	3	3	32	1.31
108650904--108650964	18	3.4	17	80	8	68	57	0	3	39	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352