genome.fa.s11.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  158  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51603785--51603828	12	3.7	12	80	19	56	84	0	4	11	0.77
51604343--51604390	23	2.1	22	84	3	60	77	6	4	12	1.11
51606052--51606156	27	3.9	27	80	9	115	38	20	23	17	1.93
51606064--51606156	27	3.4	28	82	10	120	37	23	23	15	1.93
51613886--51613997	27	4.2	26	83	7	134	38	23	23	15	1.92
51620252--51621080	44	18.7	44	68	14	325	28	19	25	26	1.98
51619979--51621082	178	6.2	178	89	2	1445	28	19	25	25	1.98
51620430--51620688	133	1.9	133	81	9	305	28	17	26	27	1.98
51619979--51621082	355	3.1	355	86	2	1504	28	19	25	25	1.98
51620473--51620767	133	2.2	133	80	5	312	27	17	27	27	1.98
51621416--51621441	13	2.0	13	100	0	52	69	15	0	15	1.20
51628950--51628974	10	2.5	10	100	0	50	0	36	0	64	0.94
51632745--51632828	44	1.9	43	92	2	141	35	30	15	17	1.91
51633058--51633094	14	2.4	16	86	8	51	32	21	2	43	1.67
51633540--51633590	20	2.7	18	82	14	59	37	21	0	41	1.54
51641566--51641623	12	5.1	12	80	14	52	72	10	1	15	1.19
51641625--51641671	6	7.5	6	90	9	76	82	0	17	0	0.66
51646047--51646080	15	2.2	16	89	5	52	76	0	11	11	1.02
51646507--51646558	4	12.0	4	77	22	52	67	1	5	25	1.23
51649992--51650119	64	2.0	64	96	0	238	25	21	28	25	1.99
51651973--51652061	5	16.2	5	78	17	72	17	6	1	74	1.10
51651973--51652061	11	8.0	11	75	15	85	17	6	1	74	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51651973--51652061	17	5.4	17	76	10	78	17	6	1	74	1.10
51651985--51652061	6	13.3	6	78	8	61	16	7	1	74	1.12
51654971--51654995	13	1.9	13	100	0	50	44	0	8	48	1.32
51655848--51656048	99	2.0	99	100	0	402	45	13	9	30	1.77
51662383--51662757	47	8.0	47	91	0	581	33	12	28	26	1.92
51662731--51662867	46	3.0	46	91	0	211	35	9	31	24	1.87
51673896--51674020	46	2.7	46	93	1	207	28	27	22	21	1.99
51674442--51674497	29	1.9	29	88	0	85	30	23	8	37	1.85
51681430--51681601	46	3.7	46	78	13	199	29	27	20	22	1.98
51681435--51681605	93	1.8	93	92	0	288	29	28	20	21	1.98
51684033--51684203	92	1.8	92	85	9	240	26	30	16	26	1.97
51688818--51688854	17	2.2	17	90	0	56	43	10	13	32	1.79
51690842--51690964	39	3.2	38	85	5	160	26	29	20	23	1.99
51697978--51698247	46	5.7	47	82	5	303	29	20	26	24	1.99
51697981--51698247	94	2.8	94	86	6	333	29	19	26	23	1.99
51699430--51699469	21	2.0	20	85	5	53	17	37	22	22	1.94
51705774--51705901	49	2.6	49	82	3	150	27	21	28	22	1.99
51708688--51708821	72	1.9	72	87	3	198	35	19	18	26	1.95
51708688--51708863	72	2.4	72	80	11	189	34	18	19	26	1.95
51709246--51709296	21	2.4	21	93	3	84	49	5	9	35	1.60
51710076--51710108	16	2.1	16	100	0	66	24	24	0	51	1.48
51715158--51715425	46	5.8	45	73	16	210	20	17	30	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51715154--51715416	93	2.8	93	93	0	438	20	18	30	30	1.96
51715204--51715372	47	3.6	47	75	13	186	20	18	30	30	1.96
51721113--51721257	40	3.6	40	83	4	175	26	24	24	24	2.00
51727292--51727331	19	2.1	19	100	0	80	40	27	10	22	1.86
51731995--51732068	29	2.6	29	84	4	87	24	31	17	27	1.97
51733774--51733836	27	2.3	27	100	0	126	55	15	9	19	1.67
51736381--51736580	93	2.2	93	84	0	256	17	29	27	27	1.97
51747448--51747565	43	2.8	42	81	7	139	27	16	25	31	1.96
51748109--51748150	19	2.2	19	91	0	66	23	11	26	38	1.90
51751318--51751498	27	6.7	27	82	2	211	29	21	7	41	1.81
51751310--51751494	54	3.4	55	82	4	252	29	23	7	40	1.81
51751426--51751562	69	2.0	69	85	0	184	29	19	10	40	1.85
51751495--51751574	27	3.0	25	80	10	79	27	20	10	42	1.83
51751454--51751534	42	1.9	42	82	0	99	30	18	11	39	1.86
51751583--51751774	27	7.1	27	84	0	242	35	17	19	27	1.94
51751583--51751774	54	3.6	54	89	0	296	35	17	19	27	1.94
51751977--51752059	27	3.1	26	87	5	112	19	21	21	37	1.94
51752372--51752441	27	2.6	26	78	14	72	20	25	17	37	1.94
51752561--51752650	6	14.8	6	75	15	87	16	17	15	50	1.79
51752561--51752650	24	3.7	24	92	1	135	16	17	15	50	1.79
51758388--51758433	19	2.4	19	88	0	74	19	10	30	39	1.86
51759544--51759606	28	2.2	28	83	8	83	33	25	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51759626--51759814	28	6.6	29	72	10	95	23	23	18	34	1.96
51759679--51759816	28	4.9	28	72	8	100	23	19	18	38	1.93
51759679--51759815	29	4.8	29	71	14	106	22	19	18	38	1.93
51762660--51762732	27	2.7	27	86	0	101	26	15	17	41	1.89
51764132--51764356	40	5.7	40	82	6	242	25	28	21	25	1.99
51764288--51764365	40	1.9	41	82	10	97	26	28	20	24	1.99
51773556--51773663	45	2.5	42	83	8	119	24	22	25	28	1.99
51784148--51784331	40	4.7	40	80	8	171	23	23	27	25	2.00
51788115--51788253	37	3.8	37	96	0	242	28	30	17	23	1.97
51788372--51788628	47	5.5	47	93	0	424	28	29	8	33	1.88
51797837--51798147	46	6.7	46	71	12	188	28	18	28	24	1.98
51797834--51798051	94	2.3	95	89	0	330	28	17	29	23	1.97
51797836--51798146	94	3.3	94	80	8	300	28	18	28	24	1.98
51807807--51807837	11	2.8	11	95	0	53	38	16	9	35	1.81
51808730--51808768	20	2.0	20	85	10	53	12	38	28	20	1.89
51812088--51812727	47	13.4	47	93	2	965	32	8	29	29	1.87
51812846--51812924	37	2.1	37	90	0	122	24	18	31	25	1.98
51814761--51814906	43	3.4	43	96	0	274	21	15	34	28	1.94
51814888--51814961	29	2.6	29	89	4	105	25	16	32	25	1.96
51815273--51815533	40	6.6	40	83	2	271	24	22	27	24	2.00
51818732--51819375	47	13.4	47	89	4	867	32	9	29	29	1.88
51818734--51819312	145	4.0	144	92	2	905	32	9	28	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51819494--51819572	37	2.1	37	90	0	122	24	18	31	25	1.98
51825576--51825695	38	3.1	38	83	7	152	20	21	25	31	1.98
51827259--51827523	43	6.2	43	90	0	386	12	22	32	32	1.91
51827710--51827863	29	5.4	29	72	11	129	20	18	32	28	1.96
51827677--51827869	58	3.3	58	88	5	268	22	18	30	29	1.97
51829873--51830020	48	3.1	48	89	0	224	30	24	8	37	1.84
51832342--51832385	23	1.9	23	85	0	61	45	11	6	36	1.67
51834153--51834274	38	3.2	38	77	6	138	21	19	26	32	1.97
51846425--51846500	28	2.7	28	97	0	143	35	23	9	31	1.86
51846622--51846709	27	3.1	27	82	8	106	19	25	23	31	1.98
51861193--51861243	22	2.3	22	83	6	68	23	9	27	39	1.86
51874873--51875189	47	6.8	48	69	17	170	27	17	29	24	1.97
51877197--51877296	27	3.7	27	95	0	182	25	21	20	34	1.97
51877179--51877296	54	2.2	54	90	3	184	26	21	18	33	1.96
51884703--51884792	27	3.3	27	95	0	162	26	22	16	34	1.95
51884675--51884792	54	2.2	54	89	3	175	27	21	16	33	1.95
51889106--51889181	37	2.1	37	83	14	95	25	7	23	43	1.80
51890511--51890558	25	1.9	25	86	0	69	47	6	6	39	1.54
51891356--51891384	5	5.8	5	100	0	58	41	0	17	41	1.49
51892638--51892760	42	2.9	43	76	7	117	31	16	21	30	1.95
51894492--51894557	33	2.0	33	88	5	98	28	25	12	33	1.92
51894504--51894598	33	2.9	33	82	4	104	31	24	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51894504--51894595	31	2.9	32	83	3	96	31	23	14	30	1.94
51896119--51896232	43	2.7	43	75	8	115	26	25	21	26	2.00
51903374--51903522	42	3.5	43	74	14	128	28	25	18	28	1.98
51903356--51903515	86	1.9	85	84	6	216	26	26	20	26	1.99
51912575--51912796	46	4.7	46	80	9	225	24	28	18	27	1.98
51912575--51912796	94	2.3	93	86	7	288	24	28	18	27	1.98
51918613--51918777	48	3.5	48	81	12	189	23	31	18	26	1.98
51924374--51924406	17	1.9	17	88	11	50	57	6	0	36	1.23
51929206--51929246	21	2.0	21	81	18	50	21	26	19	31	1.97
51934173--51934212	21	1.9	21	85	10	55	55	5	2	37	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352