Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  147  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48232487--48232701
40
5.4
40
89
2
292
25
29
22
22
1.99
48238213--48238311
40
2.5
40
88
0
135
26
28
22
23
1.99
48240288--48240329
17
2.4
18
80
11
52
45
23
0
30
1.53
48241274--48241399
43
2.9
43
78
4
164
26
25
15
33
1.95
48248157--48248198
17
2.4
18
80
11
52
45
23
0
30
1.53
48267577--48267716
55
2.5
57
80
5
160
31
17
22
29
1.96
48269512--48269618
31
3.1
36
70
20
93
42
0
3
53
1.25
48274538--48274575
14
2.5
15
87
8
51
55
2
0
42
1.14
48274535--48274598
27
2.5
25
79
16
69
56
3
1
39
1.25
48274584--48274622
19
2.1
19
85
9
53
64
0
7
28
1.21
48274941--48275075
4
33.5
4
65
12
53
63
0
10
25
1.31
48275838--48275870
15
2.3
15
89
5
50
0
12
6
81
0.85
48276408--48276892
44
10.8
44
69
15
215
29
19
16
34
1.94
48276381--48276763
136
2.8
137
85
2
502
30
17
17
34
1.94
48278633--48278672
20
2.0
20
100
0
80
30
35
5
30
1.79
48287140--48287224
40
2.1
40
84
0
107
24
15
22
37
1.93
48287164--48287241
40
2.0
40
84
5
104
24
15
24
35
1.94
48287231--48287366
28
4.9
28
90
0
191
24
13
33
28
1.93
48293150--48293206
30
1.9
30
85
7
80
26
24
7
42
1.80
48300415--48300471
30
1.9
30
85
7
80
26
24
7
42
1.80
48304611--48306424
909
2.0
909
94
0
3173
24
16
24
33
1.96
48327428--48327605
27
6.6
27
79
3
115
28
28
16
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48327428--48327605
54
3.3
55
80
10
204
28
28
16
26
1.97
48327449--48327604
82
1.9
81
85
3
215
28
28
16
26
1.97
48335468--48335645
27
6.6
27
79
3
115
28
28
16
26
1.97
48335468--48335645
54
3.3
55
80
10
204
28
28
16
26
1.97
48335489--48335644
82
1.9
81
85
3
215
28
28
16
26
1.97
48339022--48339123
40
2.5
40
87
3
134
25
17
23
33
1.96
48339113--48339222
28
3.9
28
85
0
148
24
9
30
35
1.87
48343157--48343441
47
6.1
47
79
9
278
32
11
28
27
1.91
48343195--48343447
93
2.7
92
82
11
309
33
11
27
27
1.92
48343412--48343592
97
1.9
94
89
5
283
35
6
26
30
1.82
48343411--48343592
47
3.8
48
88
5
280
35
6
26
31
1.82
48343739--48343844
37
2.8
37
94
1
176
24
17
31
26
1.97
48351700--48351725
12
2.2
12
100
0
52
0
34
0
65
0.93
48352942--48353060
27
4.4
27
84
0
148
33
20
20
26
1.97
48352939--48353060
54
2.3
55
85
7
178
34
19
19
26
1.96
48371403--48371429
14
1.9
14
100
0
54
66
3
0
29
1.09
48371403--48371436
3
11.7
3
87
6
52
64
2
0
32
1.08
48372061--48372126
32
2.2
28
82
15
87
53
7
19
19
1.69
48372070--48372130
32
1.9
32
96
0
113
49
8
19
22
1.75
48372079--48372146
32
2.1
32
83
5
84
52
7
20
19
1.69
48372690--48372744
24
2.3
24
76
17
60
63
9
1
25
1.34
48374444--48374472
15
2.0
15
93
6
51
34
17
6
41
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48375485--48375513
13
2.2
13
100
0
58
37
13
0
48
1.43
48376985--48377157
93
1.9
93
86
2
249
28
29
20
21
1.98
48379535--48379623
30
3.0
30
80
8
101
57
15
16
10
1.65
48379535--48379614
15
5.4
15
80
7
92
58
13
17
10
1.62
48379546--48379623
15
5.2
15
78
9
79
56
15
16
11
1.67
48382551--48382722
93
1.8
93
94
0
308
27
30
21
20
1.98
48382543--48382718
46
3.8
46
81
10
214
28
29
21
21
1.98
48388095--48388208
42
2.6
44
80
4
124
34
26
17
21
1.96
48393621--48393974
40
9.1
40
69
7
201
29
18
20
31
1.96
48393695--48393763
36
1.9
36
84
0
93
36
18
11
33
1.87
48393621--48393787
76
2.1
78
85
4
221
32
18
17
30
1.95
48393911--48394147
116
2.1
114
80
6
264
32
17
20
29
1.96
48394482--48394516
14
2.5
14
90
0
52
20
0
37
42
1.52
48394548--48394689
7
20.1
7
81
7
108
17
0
38
43
1.49
48394482--48394686
21
9.6
21
73
11
121
20
0
34
43
1.59
48394582--48394716
57
2.4
57
81
2
137
21
0
40
38
1.54
48395191--48395227
18
2.1
18
89
0
56
8
37
2
51
1.46
48400201--48400416
40
5.4
39
79
8
211
25
20
27
25
1.99
48400274--48400451
79
2.2
80
82
3
200
25
21
28
24
1.99
48404474--48404651
59
3.0
57
84
7
232
19
15
32
33
1.92
48404826--48404877
24
2.2
24
82
6
61
21
5
25
48
1.72
48413557--48413604
25
1.9
25
100
0
96
37
29
4
29
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48414107--48414183
36
2.1
36
97
0
145
33
19
6
40
1.77
48428356--48428412
9
5.9
9
73
15
51
35
8
21
35
1.84
48428344--48428420
20
3.8
20
94
0
136
35
12
19
32
1.90
48428345--48428420
11
7.5
11
73
16
74
35
13
19
31
1.90
48429536--48429560
5
5.0
5
100
0
50
80
0
0
20
0.72
48436421--48436477
9
5.9
9
73
15
51
35
8
21
35
1.84
48436409--48436485
20
3.8
20
94
0
136
35
12
19
32
1.90
48436410--48436485
11
7.5
11
73
16
74
35
13
19
31
1.90
48436535--48436645
26
4.3
26
86
5
156
28
19
23
27
1.98
48437250--48437284
18
1.9
18
88
0
52
34
25
8
31
1.86
48443798--48443992
83
2.3
84
84
6
245
29
13
25
31
1.93
48443816--48443992
42
4.2
42
83
4
223
29
14
25
30
1.94
48447857--48447916
30
2.0
30
83
6
77
30
25
8
36
1.85
48449964--48450002
15
2.5
15
91
4
60
56
15
12
15
1.68
48463258--48463286
13
2.2
13
100
0
58
13
24
27
34
1.93
48468453--48468597
56
2.5
58
77
8
154
33
13
17
35
1.90
48474889--48475033
56
2.5
58
77
8
154
33
13
17
35
1.90
48479720--48479843
43
2.9
43
84
3
151
25
16
25
31
1.97
48490766--48490819
27
2.0
27
88
0
81
24
16
18
40
1.90
48500038--48500255
48
4.5
48
83
2
242
24
31
17
26
1.97
48500038--48500269
96
2.4
96
85
1
286
25
31
17
25
1.97
48505581--48505626
23
2.0
23
100
0
92
34
21
17
26
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48506817--48506846
15
2.0
15
93
0
51
56
16
0
26
1.40
48510754--48511019
23
11.6
23
83
6
333
30
25
20
23
1.99
48510754--48511031
92
3.0
92
89
3
400
30
25
21
23
1.99
48515059--48515165
28
3.8
28
92
0
160
34
10
25
29
1.89
48517146--48517300
28
5.5
28
75
3
157
16
18
34
29
1.93
48517178--48517275
29
3.4
29
80
2
126
15
16
38
29
1.89
48517144--48517330
57
3.2
57
93
1
293
17
17
35
29
1.93
48522258--48522364
28
3.8
28
92
0
160
34
10
25
29
1.89
48524583--48524803
48
4.6
46
78
7
176
23
26
19
29
1.98
48524586--48524803
96
2.3
96
79
7
228
23
26
19
29
1.98
48538730--48538820
17
5.4
17
67
23
57
41
2
3
52
1.30
48538852--48538883
12
2.6
12
95
5
55
50
0
3
46
1.17
48543170--48543433
40
6.6
39
90
6
379
23
22
27
26
2.00
48543166--48543433
119
2.2
120
91
3
443
24
22
27
26
2.00
48543690--48543733
22
2.0
21
83
16
54
31
13
13
40
1.84
48551228--48551491
40
6.6
39
90
6
370
24
22
26
25
2.00
48551224--48551498
119
2.3
120
91
3
448
25
22
26
25
2.00
48556698--48556750
25
2.2
24
86
3
70
16
20
24
37
1.93
48558485--48558607
46
2.7
44
82
9
142
27
18
30
23
1.98
48562538--48562581
22
1.9
23
86
9
63
56
0
9
34
1.31
48562841--48562944
52
2.0
52
94
0
181
44
15
18
22
1.87
48570185--48570287
37
2.8
37
96
0
188
24
32
20
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48570460--48570825
48
7.6
48
97
0
660
29
27
7
35
1.84
48574355--48574423
28
2.5
28
95
0
120
31
26
21
20
1.98
48574455--48574549
40
2.4
40
96
0
181
25
25
22
27
2.00
48575825--48575927
37
2.8
37
93
0
170
25
31
19
24
1.98
48576100--48576460
48
7.5
48
95
0
641
29
27
8
35
1.85
48578936--48579078
43
3.3
44
77
13
129
34
26
16
23
1.95
48578955--48579079
44
2.9
41
75
12
110
33
28
16
21
1.95
48587554--48587778
47
4.8
47
75
9
183
28
18
29
23
1.98
48587556--48587776
94
2.3
94
80
8
236
28
18
29
23
1.98
48590117--48590294
40
4.5
40
81
6
202
24
21
27
25
2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352