genome.fa.s11.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  141  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45966443--45966577	39	3.5	39	91	0	216	19	21	29	29	1.97
45967462--45967608	68	2.2	68	97	0	276	23	9	19	47	1.78
45970679--45970719	19	2.2	19	90	0	64	51	0	9	39	1.35
45972705--45972839	39	3.5	39	94	0	234	18	22	29	28	1.98
45981492--45981641	41	3.7	41	82	1	203	21	22	27	28	1.99
45985487--45985583	48	2.0	48	87	0	140	27	13	30	27	1.94
45985489--45985626	48	2.9	48	81	2	134	28	14	29	27	1.95
45988078--45988255	27	6.6	27	74	6	119	28	16	26	29	1.97
45988075--45988255	82	2.2	81	81	4	204	28	16	25	29	1.97
45996084--45996261	27	6.6	27	74	6	119	28	16	26	29	1.97
45996081--45996261	82	2.2	81	81	4	204	28	16	25	29	1.97
45998312--45998349	19	2.1	19	90	5	60	23	23	36	15	1.94
46003825--46003921	48	2.0	48	89	0	149	26	13	31	27	1.94
46003827--46003964	48	2.9	48	82	2	143	27	14	30	27	1.95
46005641--46005674	18	1.9	18	94	5	61	29	14	11	44	1.81
46006891--46006992	28	3.6	28	86	2	143	27	34	12	25	1.92
46011246--46011387	71	2.0	71	98	0	275	30	12	16	40	1.85
46013976--46014196	40	5.6	40	85	7	265	21	23	28	26	1.99
46013982--46014196	80	2.7	79	89	2	299	21	23	29	25	1.99
46018558--46018605	25	1.9	25	82	0	60	22	8	18	50	1.74
46021311--46021385	6	12.3	6	72	13	64	50	13	17	18	1.77
46021337--46021407	19	3.8	19	76	10	74	47	12	19	19	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46021320--46021413	37	2.5	37	85	0	134	48	11	19	20	1.79
46021296--46021381	18	4.7	18	72	13	68	52	12	16	18	1.75
46021356--46021435	25	3.2	25	75	8	76	48	12	17	21	1.80
46021601--46021653	27	2.0	27	85	7	72	39	18	22	18	1.92
46021819--46021883	22	3.0	22	80	8	78	30	24	24	20	1.98
46022290--46022402	27	4.2	27	84	4	147	25	18	17	38	1.93
46022387--46022511	27	4.6	27	79	4	108	30	7	23	39	1.81
46022495--46022592	27	3.6	27	88	2	126	26	9	23	40	1.84
46025525--46025580	26	2.2	26	96	0	103	32	5	26	35	1.79
46031941--46032053	40	2.8	40	82	5	149	24	23	28	23	2.00
46041014--46041065	26	2.0	26	92	0	86	28	34	21	15	1.94
46041026--46041175	72	2.1	70	89	6	223	31	28	16	23	1.96
46041094--46041420	104	3.2	104	94	1	568	31	30	19	18	1.96
46046835--46046936	27	3.9	27	75	12	113	29	34	21	14	1.93
46046843--46046921	24	3.2	24	70	16	79	29	34	20	16	1.94
46046896--46047222	104	3.1	104	95	0	584	31	30	19	18	1.96
46047551--46047614	30	2.2	29	81	10	76	29	28	6	35	1.82
46047558--46047614	30	1.9	30	85	3	80	29	24	7	38	1.82
46054156--46054324	42	4.0	42	83	4	196	26	24	15	33	1.95
46061669--46061824	85	1.8	84	84	4	215	29	23	14	32	1.94
46061669--46061832	42	3.9	42	83	3	195	28	23	14	33	1.94
46067340--46067516	49	3.6	49	73	3	183	25	17	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46067339--46067522	100	1.8	100	89	0	287	26	18	25	30	1.98
46068942--46068999	27	2.1	27	90	0	89	31	18	15	34	1.93
46089267--46089451	40	4.7	40	81	7	191	24	23	27	24	2.00
46089320--46089484	79	2.1	79	82	6	192	26	20	27	25	1.99
46097273--46097457	40	4.7	40	82	6	216	24	22	27	24	2.00
46097326--46097480	79	2.0	79	82	7	190	26	21	27	25	1.99
46110923--46110986	31	2.1	30	88	2	92	23	23	15	37	1.93
46111195--46111277	25	3.4	25	91	5	134	30	21	20	27	1.98
46111195--46111302	25	4.4	24	87	5	128	28	22	21	27	1.99
46111350--46111396	20	2.3	20	92	7	78	34	19	10	36	1.86
46112058--46112183	27	4.7	27	90	2	155	29	4	22	43	1.73
46112060--46112223	27	6.1	27	79	7	118	28	8	21	40	1.83
46112205--46112316	53	2.1	52	82	11	138	43	8	17	30	1.78
46112215--46112405	80	2.4	80	90	2	267	42	8	19	28	1.81
46112215--46112413	27	7.4	27	80	3	204	42	8	20	28	1.81
46114327--46114359	13	2.5	14	85	14	52	33	21	6	39	1.78
46123360--46123617	39	6.6	39	86	1	311	22	19	26	31	1.98
46123360--46123634	117	2.3	117	86	3	365	21	19	27	31	1.97
46129174--46129469	39	7.6	39	87	1	380	21	20	27	30	1.98
46141210--46141287	39	2.0	39	97	0	147	29	2	34	33	1.71
46152464--46152548	31	2.7	31	85	3	109	43	18	21	16	1.88
46154343--46154393	25	2.0	25	84	0	66	31	21	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46154430--46154469	10	3.9	10	93	6	71	32	17	20	30	1.95
46154429--46154469	21	2.0	21	100	0	82	34	17	19	29	1.94
46162214--46162264	25	2.0	25	84	0	66	31	21	21	25	1.98
46162304--46162343	10	3.9	10	87	6	62	32	15	20	32	1.93
46180940--46180983	22	2.0	22	90	0	70	52	2	2	43	1.26
46186220--46186355	23	5.8	23	80	6	139	31	19	24	25	1.98
46186217--46186347	46	2.8	47	88	5	185	31	19	23	25	1.98
46189131--46189161	16	1.9	16	93	0	53	35	22	0	41	1.54
46189128--46189167	20	2.0	20	85	0	53	37	22	0	40	1.54
46189236--46189282	23	2.0	23	87	4	67	21	25	10	42	1.85
46189413--46189547	53	2.5	53	79	4	146	24	22	17	34	1.96
46189413--46189609	108	1.8	108	82	10	260	23	23	17	35	1.95
46189356--46189603	55	4.7	53	72	15	158	23	24	16	35	1.94
46196776--46196937	23	7.1	23	73	12	147	30	20	22	26	1.98
46196763--46196937	46	3.8	46	88	3	248	29	20	22	28	1.98
46201047--46201227	40	4.6	40	89	2	267	25	25	24	24	2.00
46205518--46205624	40	2.7	40	84	5	119	25	27	20	27	1.99
46205524--46205744	80	2.8	80	79	7	193	27	27	20	25	1.99
46205564--46205744	80	2.3	80	83	9	219	27	27	20	23	1.99
46205561--46205744	40	4.6	40	81	7	196	28	27	20	23	1.99
46213381--46213600	79	2.8	79	80	6	205	26	27	20	24	1.99
46213418--46213600	40	4.6	40	80	8	187	27	27	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46216704--46216810	27	3.9	27	85	9	137	17	24	22	35	1.95
46216704--46216816	54	2.1	54	86	3	156	16	23	23	37	1.94
46220350--46220449	51	2.0	51	88	4	148	33	27	16	24	1.95
46220421--46220576	43	3.7	43	78	1	143	33	27	16	21	1.95
46222595--46222633	20	2.0	20	100	0	78	35	10	12	41	1.77
46223342--46223378	18	2.1	18	100	0	74	21	5	18	54	1.64
46235895--46235931	20	1.9	20	88	5	58	40	0	8	51	1.32
46238045--46238365	46	7.0	46	90	0	417	39	15	23	21	1.91
46252613--46252739	66	1.9	67	87	4	186	33	16	29	19	1.94
46255737--46255846	31	3.5	31	93	0	184	20	28	20	30	1.97
46256066--46256135	25	2.8	25	84	0	95	28	22	21	27	1.99
46256183--46256251	11	6.7	11	74	14	67	31	18	13	36	1.89
46256183--46256239	20	2.8	20	94	0	105	31	19	12	36	1.89
46266288--46266313	12	2.2	12	100	0	52	53	15	7	23	1.67
46273067--46273114	24	2.0	24	83	0	60	45	20	25	8	1.79
46279085--46279130	19	2.5	19	82	13	60	28	2	17	52	1.56
46279195--46279233	19	2.1	18	85	4	51	61	10	0	28	1.28
46290272--46290358	43	2.0	43	86	0	120	24	25	2	48	1.63
46290315--46290461	57	2.6	56	82	7	190	32	20	4	42	1.73
46294700--46294752	27	2.0	27	88	0	79	30	20	18	30	1.97
46299220--46299303	43	2.0	43	83	2	107	22	15	26	35	1.94
46302849--46303069	40	5.6	41	83	10	282	24	22	25	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46314581--46314626	21	2.3	20	78	14	51	45	17	6	30	1.73
46315469--46315504	12	3.0	12	95	0	63	52	0	0	47	1.00
46315450--46315515	22	3.0	22	76	6	62	56	1	1	40	1.18
46324322--46324356	5	7.0	5	100	0	70	0	40	0	60	0.97
46325985--46326259	49	5.5	49	83	7	306	30	25	17	26	1.97
46325975--46326263	101	2.9	97	81	8	334	30	24	18	26	1.98
46333482--46333670	50	3.8	50	80	5	184	31	24	16	27	1.96
46333488--46333670	101	1.8	101	86	2	269	30	25	16	27	1.97
46336541--46336575	17	2.1	17	94	0	61	40	14	17	28	1.88
46339556--46339588	3	11.0	3	93	0	57	63	0	3	33	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352