genome.fa.s11.2.7.7.80.10.50.1000.279.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  279  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91301681--91301753	18	3.9	19	87	12	116	35	15	10	38	1.82
91301674--91301753	37	2.2	37	85	14	114	35	16	10	38	1.82
91301684--91301761	18	4.4	17	79	20	54	37	12	12	37	1.82
91301684--91301765	35	2.3	36	82	16	100	37	12	12	37	1.80
91302045--91302244	45	4.5	45	82	1	231	23	27	16	33	1.95
91302045--91302228	89	2.1	90	84	5	239	23	27	15	32	1.95
91302430--91302685	88	3.0	88	79	13	345	26	25	17	30	1.97
91302518--91302721	78	2.6	78	91	1	338	25	24	18	31	1.98
91303977--91304058	24	3.4	24	85	6	112	0	17	0	82	0.66
91303971--91304061	46	2.0	45	86	6	128	1	16	0	82	0.73
91306578--91306602	12	2.1	12	100	0	50	0	24	0	76	0.80
91309668--91309725	22	2.7	23	81	7	59	37	17	6	37	1.76
91309704--91309740	19	1.9	19	94	0	65	32	16	13	37	1.87
91309709--91309748	19	2.2	19	86	8	57	35	12	15	37	1.85
91312659--91312957	147	2.0	150	96	3	552	38	19	17	25	1.93
91315155--91315435	138	2.0	140	98	1	548	39	9	15	35	1.80
91315969--91316210	47	5.1	47	86	4	331	32	12	29	26	1.92
91315969--91316210	98	2.5	94	89	2	358	32	12	29	26	1.92
91316184--91316320	46	3.0	46	87	0	193	35	8	30	25	1.85
91316474--91316649	37	4.8	37	92	0	271	24	18	30	26	1.98
91319793--91319817	3	8.3	3	100	0	50	32	0	0	68	0.90
91323306--91323455	41	3.7	41	83	1	212	21	23	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91330564--91330709	41	3.6	41	83	1	204	21	23	26	28	1.99
91332604--91332802	100	2.0	100	94	0	353	40	12	7	39	1.71
91333039--91333097	18	3.3	18	72	9	57	33	1	1	62	1.15
91337389--91337468	38	2.1	38	88	0	115	23	23	25	27	2.00
91337401--91337491	38	2.4	38	84	0	110	25	17	25	31	1.97
91337541--91337595	16	3.6	16	72	18	62	10	32	29	27	1.91
91337495--91337636	73	1.9	73	95	0	257	12	27	30	28	1.93
91337568--91337673	43	2.5	43	93	0	185	12	27	32	28	1.92
91342989--91343096	38	2.8	38	90	0	162	21	24	27	26	1.99
91343093--91343256	43	3.8	43	89	0	247	12	25	32	29	1.93
91358942--91359120	66	2.7	66	80	5	209	31	25	12	29	1.93
91361229--91361269	21	1.9	21	85	5	55	39	17	9	34	1.82
91361242--91361292	19	2.9	16	78	18	57	35	17	9	37	1.83
91361226--91361282	19	2.8	19	82	12	69	36	17	10	35	1.84
91361630--91361804	45	3.9	45	80	3	192	26	24	13	36	1.92
91361638--91361804	89	1.9	89	82	7	214	26	25	13	34	1.93
91362024--91362647	44	14.2	44	72	12	305	28	26	15	30	1.96
91362046--91362471	176	2.4	175	90	1	654	28	25	15	30	1.96
91362257--91362603	132	2.6	131	85	4	475	29	26	14	29	1.95
91362081--91362652	308	1.9	307	89	0	883	28	25	15	30	1.96
91363649--91363712	7	9.0	7	79	16	60	4	12	0	82	0.81
91363649--91363699	16	3.3	15	86	13	68	3	11	0	84	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91363649--91363720	23	3.3	23	75	16	80	4	13	0	81	0.82
91363656--91363709	16	3.4	15	85	14	65	5	11	0	83	0.80
91369409--91369473	19	3.1	21	86	6	62	36	20	9	33	1.84
91369426--91369503	19	4.2	19	87	12	117	35	16	10	37	1.83
91369428--91369503	35	2.2	35	90	9	120	35	17	10	36	1.84
91378165--91378517	47	7.5	47	92	1	562	33	8	29	28	1.87
91378165--91378462	143	2.1	143	95	1	537	33	8	28	30	1.86
91378636--91378714	37	2.1	37	88	0	113	24	17	31	26	1.97
91381087--91381145	30	2.0	30	89	0	91	32	27	15	25	1.95
91383465--91383523	9	6.7	9	75	9	50	71	1	6	20	1.18
91383465--91383516	25	2.1	25	85	3	70	71	1	5	21	1.17
91383618--91383681	24	2.7	24	82	0	74	54	3	7	34	1.45
91383956--91384257	3	100.0	3	69	15	133	59	2	7	29	1.38
91383953--91383993	14	2.9	14	89	7	57	60	2	4	31	1.30
91383959--91384038	44	1.9	40	85	10	106	62	2	5	30	1.29
91383972--91384097	38	3.5	35	78	10	96	58	2	7	31	1.38
91383953--91384143	23	8.2	23	74	14	135	59	2	7	31	1.37
91384090--91384161	22	3.2	22	81	11	67	61	1	9	27	1.36
91384169--91384256	19	4.5	19	70	14	54	62	3	5	28	1.34
91384470--91384519	3	17.0	3	79	4	57	62	2	2	34	1.18
91405417--91405453	19	2.1	19	85	10	51	8	16	0	75	1.02
91405455--91405496	20	2.2	19	86	4	57	2	45	0	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91406836--91406991	28	5.3	27	70	22	100	27	18	26	27	1.98
91406853--91406970	32	3.8	32	73	20	117	26	19	26	27	1.99
91406803--91406991	60	3.2	60	90	3	276	28	19	25	27	1.98
91417329--91417400	23	3.1	23	76	7	67	62	2	4	30	1.28
91417388--91417453	24	2.6	25	76	19	66	57	0	7	34	1.27
91418510--91419112	44	13.8	44	68	15	254	29	24	15	30	1.95
91418524--91418938	176	2.4	176	89	0	625	30	25	15	28	1.95
91418724--91419069	132	2.6	131	86	3	473	30	24	15	30	1.95
91419008--91419112	43	2.4	43	96	0	192	30	20	14	34	1.93
91427088--91427140	14	3.7	14	77	20	56	43	13	22	20	1.86
91431993--91432071	37	2.1	37	86	4	106	25	29	18	26	1.98
91432190--91432735	47	11.6	47	95	1	932	28	29	9	32	1.88
91432666--91432808	73	2.0	73	95	0	259	30	27	6	34	1.83
91432742--91432831	47	1.9	47	97	0	171	28	27	10	33	1.89
91435922--91435993	23	3.1	23	80	4	83	62	1	4	31	1.23
91435981--91436046	24	2.6	25	76	19	66	57	0	7	34	1.27
91437619--91437655	19	1.9	19	88	0	56	54	18	5	21	1.64
91440498--91440670	46	3.7	46	80	13	219	21	21	28	28	1.98
91440495--91440665	93	1.8	93	96	0	315	21	21	29	28	1.98
91448078--91448249	93	1.8	93	91	2	283	22	22	27	27	1.99
91448082--91448253	46	3.7	46	79	11	199	22	22	27	28	1.99
91450254--91450295	6	6.8	6	84	10	50	78	2	0	19	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91455647--91455671	13	1.9	13	100	0	50	48	8	0	44	1.32
91456217--91456247	13	2.4	13	100	0	62	51	12	9	25	1.70
91462121--91462177	30	1.9	30	85	0	78	26	28	31	14	1.94
91465772--91465932	82	2.0	82	98	0	313	44	18	9	26	1.81
91469343--91469837	47	10.4	47	91	2	756	32	9	29	28	1.88
91469958--91470036	37	2.1	37	90	0	122	24	18	31	25	1.98
91471988--91472078	30	3.0	30	91	0	137	40	6	21	30	1.79
91472808--91472991	67	2.8	64	77	8	203	29	16	30	23	1.96
91476635--91476858	39	5.7	40	85	7	255	24	22	28	24	2.00
91476636--91476858	40	5.6	40	85	7	235	24	22	28	24	2.00
91476688--91476891	79	2.6	79	84	5	218	25	21	27	24	1.99
91491116--91491140	9	2.8	9	100	0	50	48	24	16	12	1.79
91501696--91501879	40	4.6	39	81	6	201	24	21	27	26	1.99
91501696--91501879	79	2.3	80	82	6	205	24	21	27	26	1.99
91501750--91501912	79	2.1	78	80	5	177	25	20	28	25	1.99
91506128--91506159	15	2.1	16	94	5	57	21	0	18	59	1.38
91507695--91507879	40	4.7	40	82	7	209	24	22	27	25	2.00
91507695--91507879	79	2.3	81	83	7	227	24	22	27	25	2.00
91507748--91507912	79	2.1	79	84	6	210	26	21	27	25	1.99
91509954--91510084	46	2.8	45	75	12	131	26	19	30	22	1.98
91511237--91511277	22	1.9	22	95	5	75	9	41	29	19	1.83
91532091--91532247	86	1.8	85	82	6	201	33	24	17	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91548441--91548573	67	2.0	67	98	0	257	30	16	14	38	1.88
91548830--91548869	20	2.0	20	85	4	55	30	2	5	62	1.29
91549128--91549196	35	2.0	35	82	5	86	33	1	1	63	1.12
91553592--91553661	27	2.6	26	95	2	95	31	28	12	27	1.93
91553592--91553689	28	3.5	28	90	2	135	31	28	13	26	1.94
91561978--91562047	27	2.6	26	95	2	95	31	28	12	27	1.93
91561978--91562075	28	3.5	28	90	2	135	31	28	13	26	1.94
91562522--91562548	12	2.2	12	100	0	54	40	0	7	51	1.30
91565075--91565106	8	4.1	8	92	8	57	28	0	34	37	1.57
91565074--91565104	15	2.1	15	100	0	62	25	0	32	41	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352