genome.fa.s11.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  98  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31024739--31024772	13	2.7	13	90	4	52	82	0	2	14	0.79
31030794--31030945	27	5.6	27	93	3	241	26	13	28	30	1.94
31030794--31030945	55	2.8	55	94	0	259	26	13	28	30	1.94
31038797--31038948	27	5.6	27	93	3	241	26	13	28	30	1.94
31038797--31038948	55	2.8	55	94	0	259	26	13	28	30	1.94
31042577--31042606	15	1.9	16	93	6	53	53	6	20	20	1.67
31043753--31043778	3	8.7	3	100	0	52	34	0	65	0	0.93
31046080--31046138	31	1.9	31	83	13	77	33	18	1	45	1.60
31047018--31047057	21	2.0	20	85	5	53	42	20	0	37	1.52
31048659--31048706	24	2.0	24	100	0	96	50	25	0	25	1.50
31048948--31048987	19	2.1	19	85	0	53	70	10	2	17	1.27
31051560--31051590	16	1.9	16	93	0	53	41	19	29	9	1.83
31051811--31051894	30	2.9	29	89	3	132	28	14	28	28	1.95
31051807--31051926	29	4.2	29	81	4	136	29	12	27	30	1.93
31055545--31055672	55	2.3	55	82	12	156	12	26	31	29	1.93
31061036--31061074	14	2.9	14	84	3	53	20	5	28	46	1.72
31069765--31069828	22	2.9	22	100	0	128	42	17	9	31	1.81
31077591--31077650	27	2.3	26	85	2	75	21	23	20	35	1.96
31082726--31082814	45	2.0	45	100	0	178	20	24	21	33	1.97
31083644--31083769	46	2.7	46	91	0	198	22	21	26	29	1.99
31083994--31084031	19	2.0	20	85	15	53	36	0	23	39	1.55
31087825--31087884	27	2.3	27	85	2	77	21	23	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31089928--31089990	15	4.2	15	77	0	72	52	14	17	15	1.75
31089928--31089990	30	2.1	30	84	0	81	52	14	17	15	1.75
31108001--31108083	38	2.2	38	86	0	112	14	18	28	38	1.90
31114643--31114694	24	2.2	24	96	0	95	32	23	7	36	1.83
31116207--31116263	25	2.3	25	87	0	78	70	7	12	10	1.34
31116217--31116267	25	2.0	25	100	0	102	68	3	11	15	1.34
31119219--31119328	26	4.2	26	94	2	177	34	4	24	36	1.76
31120770--31120844	26	2.8	26	85	4	87	34	21	12	32	1.90
31120948--31121114	27	6.2	27	89	2	228	18	25	22	33	1.97
31137212--31137321	26	4.2	26	94	2	177	34	4	24	36	1.76
31138761--31138835	26	2.8	26	83	4	78	34	20	12	33	1.89
31138939--31139092	27	5.7	27	88	0	218	20	25	22	31	1.98
31144968--31145017	24	2.1	24	100	0	100	24	8	22	46	1.78
31150394--31150588	40	4.9	40	93	0	329	26	21	28	24	1.99
31160745--31160858	35	3.3	35	73	2	95	28	7	19	43	1.79
31164327--31164359	15	2.1	17	88	11	52	6	18	0	75	1.00
31164621--31164660	7	5.6	7	87	3	53	37	45	0	17	1.49
31166433--31166560	34	3.7	35	72	12	113	59	12	9	18	1.59
31166547--31166633	40	2.2	40	89	2	129	59	10	1	28	1.37
31172059--31172272	46	4.6	48	73	15	155	24	28	17	29	1.98
31177448--31177505	17	3.4	17	97	0	107	31	12	18	37	1.88
31182929--31183018	30	3.1	30	90	3	139	28	27	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31187982--31188132	47	3.2	45	72	12	126	24	27	18	29	1.98
31191309--31191359	25	2.0	25	92	0	84	19	23	13	43	1.87
31194712--31194806	44	2.2	42	83	7	111	24	20	24	31	1.98
31196467--31196519	26	2.0	26	82	7	63	26	13	20	39	1.89
31197994--31198129	26	5.2	26	91	3	209	36	22	8	33	1.84
31201728--31201803	37	2.1	37	100	0	152	23	28	18	28	1.98
31201736--31201814	37	2.1	37	92	0	131	26	24	21	27	1.99
31210068--31210131	32	2.0	32	96	0	119	31	20	9	39	1.84
31214108--31214205	19	5.2	19	86	7	137	39	10	15	34	1.81
31214108--31214205	36	2.6	37	83	9	126	39	10	15	34	1.81
31216705--31216848	40	3.6	40	83	0	180	26	20	24	29	1.99
31217276--31217450	7	24.6	7	69	12	52	24	0	28	46	1.57
31217276--31217480	14	14.4	14	68	12	69	24	0	30	44	1.57
31217338--31217386	22	2.3	21	82	10	55	22	0	28	48	1.50
31217374--31217480	22	5.0	23	70	12	68	21	0	35	42	1.53
31217374--31217479	7	14.9	7	72	11	54	21	0	34	43	1.53
31217984--31218037	18	3.0	18	91	0	90	11	33	0	55	1.35
31220894--31220924	15	2.0	16	93	6	55	51	3	6	38	1.44
31225549--31225633	31	2.8	31	80	8	111	24	24	17	32	1.97
31225853--31225921	25	2.8	26	86	8	99	30	23	18	27	1.98
31225840--31225922	25	3.4	24	83	9	98	28	22	18	30	1.97
31226052--31226099	25	1.9	25	91	0	78	29	14	22	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31228185--31228220	17	2.1	17	94	0	63	27	11	13	47	1.77
31228943--31228978	12	3.1	12	92	4	56	36	5	16	41	1.72
31228947--31228986	11	3.5	11	93	3	62	40	2	20	37	1.66
31230995--31231083	27	3.3	27	84	3	90	42	16	8	31	1.79
31231096--31231277	27	6.5	27	83	8	197	29	21	9	40	1.84
31231103--31231270	87	1.9	87	85	4	232	27	22	9	40	1.85
31231203--31231424	27	8.2	27	79	4	117	36	20	8	33	1.83
31231203--31231396	54	3.6	54	81	4	158	36	20	8	34	1.84
31231257--31231424	54	3.1	54	78	8	137	39	20	8	30	1.82
31231272--31231427	81	1.9	81	88	0	231	40	19	9	30	1.83
31231257--31231486	27	8.4	27	78	7	119	38	18	9	33	1.83
31231540--31231631	27	3.4	27	85	8	116	32	20	26	20	1.97
31232434--31232609	26	6.8	26	88	0	264	27	23	22	26	1.99
31232434--31232609	78	2.3	78	92	1	300	27	23	22	26	1.99
31232754--31232845	42	2.2	42	90	0	139	30	14	20	34	1.92
31232869--31232946	31	2.5	31	93	2	131	29	16	26	26	1.97
31237017--31237055	19	2.1	19	100	0	78	56	10	0	33	1.33
31239253--31239302	25	2.0	25	84	7	66	48	10	4	38	1.56
31247205--31247252	25	1.9	25	83	8	62	47	10	2	39	1.49
31264058--31264258	43	4.7	43	83	3	217	27	14	23	33	1.94
31265594--31265679	42	2.0	42	93	0	145	39	8	18	33	1.80
31266650--31266782	48	2.8	48	79	6	144	24	27	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31267168--31267435	70	3.8	70	90	0	430	38	17	13	31	1.88
31270739--31270813	38	2.0	38	100	0	150	37	16	24	22	1.93
31272841--31272953	48	2.4	48	84	0	154	18	15	28	38	1.91
31275631--31275834	43	4.7	45	78	15	223	28	25	21	24	1.99
31275631--31275832	87	2.3	87	95	0	359	28	25	20	24	1.99
31278276--31278308	17	2.1	16	88	11	50	30	0	0	69	0.88
31278381--31278430	26	2.0	24	88	7	73	30	0	6	64	1.18
31280086--31280137	25	2.0	26	85	3	70	36	21	15	26	1.93
31286498--31286570	36	2.0	36	83	0	92	23	24	12	39	1.89
31286526--31286583	27	2.2	26	84	3	71	18	20	17	43	1.89
31286534--31286588	26	2.1	27	89	3	85	18	20	21	40	1.92
31286978--31287069	27	3.4	27	84	0	121	35	15	20	28	1.93
31289185--31289238	24	2.2	25	77	9	58	31	1	48	18	1.59
31290491--31290584	27	3.5	27	86	0	134	37	15	20	26	1.93
31290729--31290799	36	2.0	36	88	0	106	23	25	32	18	1.97
31293094--31293252	43	3.7	43	73	13	139	34	25	15	25	1.94
31294253--31294355	37	2.8	37	93	0	170	26	32	18	23	1.97
31294496--31294778	48	5.9	48	96	0	485	30	28	6	34	1.83
31303645--31303699	27	2.0	27	100	0	110	49	7	14	29	1.70
31304654--31304698	23	2.0	23	83	16	58	44	11	4	40	1.60
31304662--31305274	148	4.1	148	87	2	841	43	9	5	42	1.58
31304667--31305276	149	4.1	148	86	2	826	43	9	5	42	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31305625--31305697	28	2.6	28	86	2	94	52	0	15	32	1.43
31306148--31306248	42	2.4	42	83	3	123	41	18	15	23	1.89
31306678--31306705	2	14.0	2	100	0	56	0	50	0	50	1.00
31314419--31314443	5	5.0	5	100	0	50	80	0	20	0	0.72
31315708--31315902	40	4.9	40	88	1	259	27	21	27	23	1.99
31315708--31315902	80	2.5	80	85	2	286	27	21	27	23	1.99
31324990--31325042	26	2.1	26	96	3	99	43	18	3	33	1.68
31326097--31326152	26	2.2	26	96	0	103	37	25	7	30	1.82
31333138--31333245	26	4.2	26	93	0	189	36	24	7	32	1.83
31335712--31335761	26	1.9	26	84	15	68	46	16	8	30	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352