genome.fa.s11.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  174  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56830140--56830187	25	1.9	25	83	8	62	25	10	14	50	1.74
56832733--56832790	23	2.5	24	75	13	59	48	3	0	48	1.18
56835004--56835199	97	2.0	95	89	1	293	41	23	8	26	1.82
56843999--56844057	19	2.9	21	75	14	61	40	1	6	50	1.39
56844092--56844136	21	2.1	21	84	8	56	37	2	4	55	1.32
56852508--56852564	18	3.1	19	85	10	73	38	0	5	56	1.22
56856183--56856324	38	3.7	39	83	5	173	25	22	26	25	2.00
56856183--56856324	76	1.9	77	87	1	214	25	22	26	25	2.00
56856183--56856344	38	4.2	38	81	5	166	24	22	27	25	2.00
56856898--56856984	43	2.0	43	97	0	165	28	6	17	47	1.73
56864174--56864299	39	3.2	39	85	0	171	25	20	26	26	1.99
56864174--56864317	78	1.8	77	83	5	191	26	21	26	25	2.00
56866564--56866620	24	2.5	24	78	16	66	8	17	3	70	1.28
56866562--56866620	25	2.4	24	78	15	59	8	16	3	71	1.25
56869698--56869727	11	2.7	11	89	0	51	66	0	0	33	0.92
56870713--56870825	48	2.4	47	82	5	140	45	16	12	25	1.83
56872907--56873047	33	4.2	33	71	10	99	24	25	19	31	1.98
56878843--56878871	15	1.9	15	100	0	58	37	13	20	27	1.91
56881311--56881370	19	3.1	19	71	21	61	53	11	1	33	1.47
56882579--56882611	16	2.1	16	94	0	57	39	6	33	21	1.78
56882591--56882687	44	2.2	44	87	5	133	31	5	28	34	1.79
56882842--56882878	17	2.2	17	86	13	51	59	0	2	37	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56882862--56883081	102	2.2	102	95	0	395	51	3	1	43	1.30
56883022--56883213	59	3.3	59	69	24	156	54	3	1	41	1.23
56882964--56883272	117	2.6	119	95	2	552	51	4	1	42	1.30
56883247--56883287	21	2.0	21	100	0	82	56	9	0	34	1.32
56890667--56890721	25	2.2	25	83	6	67	27	5	0	67	1.12
56890786--56890887	5	20.0	5	70	12	57	37	0	1	59	1.15
56890789--56890838	25	2.0	26	92	4	84	38	2	0	60	1.09
56890816--56890926	38	3.0	37	83	6	136	36	0	3	59	1.21
56890788--56890963	7	26.7	7	65	24	55	38	1	2	57	1.21
56890987--56891065	29	2.8	29	77	12	83	32	6	0	60	1.22
56894459--56894513	25	2.3	23	78	12	58	43	3	16	36	1.65
56894565--56894721	25	6.2	25	71	12	113	57	4	7	30	1.47
56894727--56894763	19	1.9	19	88	0	56	59	5	5	29	1.42
56894737--56894783	24	2.0	23	88	12	69	63	0	2	34	1.06
56895070--56895108	16	2.4	16	86	0	51	43	28	5	23	1.75
56895271--56895369	30	3.3	30	86	0	153	18	6	47	28	1.72
56896239--56896491	90	2.9	88	88	5	356	37	18	16	27	1.92
56896403--56896840	72	6.1	73	90	6	675	31	22	17	28	1.96
56896402--56896840	140	3.1	141	92	4	704	31	22	17	28	1.96
56908698--56908752	25	2.3	23	78	12	58	43	3	16	36	1.65
56908803--56908858	26	2.2	26	80	6	60	60	5	7	26	1.44
56908808--56908883	22	3.3	22	75	13	71	60	5	5	28	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56908813--56908886	26	2.8	25	83	6	76	59	5	5	29	1.42
56908902--56909032	23	5.6	25	73	13	100	55	3	5	35	1.38
56908827--56908947	30	4.3	29	75	14	101	57	3	6	32	1.40
56909075--56909140	29	2.2	29	81	13	71	12	48	31	7	1.68
56909512--56909610	30	3.3	30	88	0	153	18	5	48	28	1.69
56909545--56909600	18	3.4	18	65	27	52	19	7	44	28	1.77
56911608--56911759	56	2.7	56	84	2	189	26	13	22	36	1.92
56919027--56919096	12	5.8	12	72	21	58	50	1	1	47	1.19
56925121--56925187	35	1.9	35	93	3	118	34	7	5	52	1.54
56925757--56925960	59	3.4	59	93	0	336	50	7	6	35	1.58
56929673--56929729	28	2.1	27	78	18	66	29	24	5	40	1.77
56929681--56929735	28	2.0	28	100	0	110	25	25	3	45	1.70
56933435--56933468	2	17.0	2	100	0	68	50	50	0	0	1.00
56934616--56934680	28	2.3	29	81	2	69	29	23	3	44	1.68
56945088--56945153	28	2.3	29	82	7	73	28	21	3	46	1.66
56954596--56954625	8	3.8	8	90	0	51	43	26	26	3	1.70
56955015--56955155	27	5.2	27	80	11	173	17	23	23	35	1.95
56955012--56955173	54	3.0	54	90	4	240	18	24	22	35	1.96
56955015--56955173	27	5.9	27	80	11	157	18	23	22	35	1.96
56955015--56955173	81	2.0	80	82	8	198	18	23	22	35	1.96
56957081--56957181	49	2.1	49	98	0	193	34	19	5	39	1.76
56957967--56958031	31	2.1	31	85	8	87	66	0	4	29	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56958759--56958794	16	2.2	17	90	5	56	13	0	16	69	1.19
56961552--56961595	22	2.0	22	86	0	61	52	2	0	45	1.13
56961615--56961656	13	2.9	14	80	13	50	54	0	0	45	0.99
56961619--56961655	16	2.3	16	86	13	58	59	0	0	40	0.97
56961688--56961744	15	3.5	15	71	17	51	49	1	1	47	1.22
56962089--56962151	30	2.2	28	81	10	81	47	3	6	42	1.44
56962098--56962156	30	2.0	30	96	0	109	49	3	8	38	1.50
56962233--56962271	14	2.8	14	92	7	62	41	12	0	46	1.42
56964098--56964151	27	2.0	27	100	0	108	48	14	11	25	1.77
56965562--56965591	15	2.0	15	93	0	51	43	6	16	33	1.74
56966394--56966428	17	2.1	17	88	0	52	68	2	0	28	1.04
56966895--56966929	16	2.2	16	100	0	70	62	17	0	20	1.32
56970149--56970192	20	2.2	20	87	0	61	47	2	13	36	1.56
56973846--56973899	22	2.5	22	87	6	74	37	0	1	61	1.07
56973976--56974000	13	1.9	13	100	0	50	52	0	0	48	1.00
56976562--56976613	25	2.1	25	85	0	68	21	7	19	51	1.71
56980302--56980378	38	2.0	38	92	0	127	38	10	19	31	1.85
56991397--56991699	40	7.6	40	89	2	396	26	28	20	24	1.99
56999377--56999679	40	7.6	40	89	2	396	26	28	20	24	1.99
57001659--57001689	15	2.1	14	94	5	53	25	0	0	74	0.82
57002813--57002941	48	2.7	46	84	9	163	28	19	28	23	1.98
57002882--57003002	61	2.0	61	96	0	224	28	20	28	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57002944--57003199	48	5.3	48	83	2	309	26	19	30	23	1.98
57011639--57011663	2	12.5	2	100	0	50	52	0	0	48	1.00
57014078--57014248	94	1.8	94	83	0	225	23	28	20	28	1.99
57014078--57014285	48	4.4	48	75	6	156	22	27	20	29	1.99
57020503--57020541	21	1.9	20	94	5	69	15	25	41	17	1.89
57021772--57021945	48	3.6	48	81	2	172	23	28	20	27	1.99
57023419--57023514	48	2.0	48	83	4	122	68	2	4	25	1.18
57023447--57023528	10	8.8	10	72	18	54	69	1	2	26	1.08
57023675--57023706	12	2.8	12	86	13	50	62	0	0	37	0.95
57023855--57023989	9	14.0	9	67	16	65	33	4	0	61	1.21
57023856--57023937	18	4.4	19	77	15	82	32	3	1	62	1.21
57023856--57023959	20	5.4	20	73	12	69	36	2	0	59	1.19
57028157--57028182	3	8.7	3	100	0	52	30	0	0	69	0.89
57036353--57036538	41	4.5	41	84	1	203	36	13	26	23	1.92
57036349--57036540	82	2.3	82	85	1	251	36	13	26	22	1.92
57047707--57047753	20	2.3	20	85	0	58	14	29	36	19	1.92
57051046--57051116	26	2.8	26	95	2	126	43	7	5	43	1.55
57051057--57051126	12	5.7	12	91	6	113	42	8	7	41	1.63
57051057--57051126	26	2.8	25	93	4	115	42	8	7	41	1.63
57054216--57054260	14	2.9	16	87	9	58	42	8	0	48	1.34
57054214--57054260	16	2.9	16	81	12	53	42	8	0	48	1.33
57069578--57069619	18	2.3	18	95	0	75	26	16	33	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57071203--57071372	46	3.6	47	79	13	158	27	19	29	24	1.98
57071205--57071471	47	5.7	45	78	9	193	27	18	28	24	1.98
57071205--57071471	140	1.9	141	82	8	339	27	18	28	24	1.98
57073456--57073529	37	2.0	37	82	15	91	41	24	8	25	1.82
57080604--57080635	13	2.4	14	90	10	50	50	0	3	46	1.17
57080768--57080818	23	2.3	22	77	16	52	23	1	9	64	1.34
57081345--57081389	19	2.5	19	78	7	58	80	2	0	17	0.82
57081348--57081390	13	3.4	13	77	3	52	81	2	0	16	0.79
57081872--57081899	13	2.2	13	100	0	56	46	0	0	53	1.00
57088540--57088647	26	4.2	26	90	0	171	36	24	6	33	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352