genome.fa.s11.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  207  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68366719--68366936	120	1.8	121	81	5	271	26	20	27	25	1.99
68374817--68375041	40	5.6	40	78	2	218	26	22	26	24	2.00
68374817--68375077	80	3.3	80	76	4	242	26	22	25	25	2.00
68376615--68376658	8	5.5	8	94	0	70	45	0	18	36	1.49
68376612--68376658	24	2.0	24	95	0	85	42	0	19	38	1.51
68376715--68376783	36	1.9	36	84	0	93	26	11	26	36	1.90
68378310--68378430	50	2.4	52	85	2	174	38	14	14	33	1.87
68378453--68378533	39	2.1	39	90	0	126	45	14	9	29	1.77
68384015--68384057	23	1.9	23	85	4	61	34	9	9	46	1.68
68384021--68384077	29	2.0	29	96	0	105	33	7	10	49	1.64
68384641--68384855	42	5.1	42	81	7	238	31	26	13	27	1.94
68386474--68386587	40	2.8	40	75	0	120	35	21	21	21	1.96
68386434--68386582	80	1.9	80	84	0	199	37	20	21	20	1.94
68386487--68386601	20	5.8	20	70	0	77	38	19	21	20	1.94
68386431--68386601	80	2.1	80	77	7	175	38	19	21	21	1.94
68392732--68392834	42	2.4	43	81	10	122	24	17	25	33	1.96
68403231--68403266	16	2.2	16	95	0	63	50	16	22	11	1.77
68403477--68403592	29	4.0	28	82	4	124	28	15	30	25	1.96
68403490--68403601	58	1.9	58	85	3	154	27	15	31	25	1.95
68405005--68405179	43	4.1	43	76	6	160	31	24	16	28	1.96
68410492--68410741	54	4.6	54	74	6	184	40	19	8	32	1.80
68410452--68410747	27	10.9	27	77	5	159	39	18	9	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68410789--68410866	27	2.9	27	81	11	88	35	21	23	19	1.96
68411667--68411728	25	2.5	25	89	0	88	30	17	24	27	1.97
68411955--68412037	31	2.7	31	90	3	134	27	16	26	28	1.97
68414294--68414560	27	9.9	27	77	4	153	38	20	7	32	1.82
68414393--68414644	54	4.6	54	78	7	231	40	20	7	31	1.81
68414402--68414622	27	8.1	27	79	7	153	40	18	8	32	1.81
68414375--68414644	108	2.5	108	79	3	265	39	20	8	32	1.82
68414663--68414740	27	2.9	27	75	11	79	37	20	20	21	1.95
68415547--68415613	25	2.7	25	90	0	98	28	25	22	23	1.99
68415547--68415623	25	3.1	25	86	1	84	31	23	19	25	1.98
68415572--68415629	24	2.4	25	78	16	68	31	22	20	25	1.98
68415837--68415917	31	2.7	31	94	3	139	27	16	27	29	1.97
68418893--68418945	9	5.4	9	75	16	52	33	7	20	37	1.81
68418898--68418938	11	3.9	11	78	12	50	36	9	19	34	1.85
68418893--68418953	20	3.0	20	87	0	95	32	9	21	36	1.86
68419004--68419076	23	3.1	23	90	3	110	27	19	21	31	1.97
68419003--68419083	24	3.4	24	89	5	119	28	18	23	29	1.98
68419291--68419354	31	2.1	31	93	0	110	34	15	23	26	1.95
68421160--68421314	43	3.6	42	76	8	143	30	23	16	29	1.97
68421961--68422066	56	1.9	56	96	0	194	42	20	11	25	1.85
68424882--68424928	19	2.3	20	82	10	60	36	0	14	48	1.44
68425283--68425508	50	4.5	50	79	6	197	25	17	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68430482--68430518	18	2.1	18	89	0	56	48	10	13	27	1.75
68430549--68430593	23	1.9	24	90	4	74	24	46	2	26	1.64
68430625--68430727	52	2.0	52	88	0	152	33	21	19	26	1.97
68430938--68431233	27	11.0	27	77	6	199	40	17	12	28	1.86
68430937--68431233	81	3.7	81	77	4	294	41	17	12	28	1.86
68430976--68431194	54	4.1	54	80	4	219	42	16	12	28	1.85
68432400--68432833	217	2.0	217	90	0	690	34	25	16	23	1.96
68435047--68435358	81	3.9	81	82	4	351	42	17	12	26	1.85
68435047--68435369	27	12.0	27	80	3	274	42	17	12	27	1.85
68435360--68435422	27	2.3	26	81	7	72	23	17	17	41	1.90
68437748--68437805	16	3.2	17	79	16	64	46	0	29	24	1.53
68438161--68438197	9	4.1	9	89	0	56	32	10	10	45	1.74
68438247--68438281	18	1.9	18	94	0	61	40	22	8	28	1.84
68439191--68439231	22	1.9	21	85	5	55	53	19	2	24	1.57
68445212--68445261	20	2.5	20	100	0	100	50	14	0	36	1.43
68445212--68445261	10	5.0	10	81	18	68	50	14	0	36	1.43
68454333--68454378	16	2.9	16	90	0	56	47	19	21	10	1.80
68454589--68454704	29	4.0	28	82	4	124	28	15	30	25	1.96
68454602--68454713	58	1.9	58	85	3	154	27	15	31	25	1.95
68456117--68456291	43	4.1	43	76	6	160	31	24	16	28	1.96
68461627--68461838	54	3.9	54	76	7	180	41	18	8	31	1.80
68461600--68461793	81	2.4	81	76	1	183	39	20	7	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68461560--68461855	27	10.9	27	78	5	159	39	18	9	33	1.82
68461897--68461958	25	2.3	28	78	13	76	35	24	20	19	1.96
68461897--68461961	26	2.4	27	80	10	80	35	23	21	20	1.96
68461908--68461973	27	2.5	26	85	4	80	34	18	25	21	1.96
68462772--68462833	25	2.5	25	89	0	88	30	17	24	27	1.97
68463058--68463139	30	2.7	31	92	5	134	28	17	25	29	1.97
68465391--68465647	27	9.6	27	77	6	121	38	21	8	32	1.83
68465429--68465496	26	2.6	27	90	4	111	27	26	7	38	1.83
68465496--68465620	27	4.7	27	82	5	128	40	20	8	29	1.83
68465482--68465730	53	4.6	53	74	10	182	39	20	8	31	1.82
68465658--68465709	27	1.9	27	92	0	86	40	11	11	36	1.78
68465764--68465823	27	2.3	26	80	8	68	36	18	25	20	1.94
68465764--68465827	26	2.4	26	82	7	76	35	18	25	20	1.95
68466329--68466379	10	4.8	11	81	16	63	50	13	0	35	1.42
68466328--68466372	20	2.2	20	100	0	90	55	13	0	31	1.38
68488942--68488991	20	2.5	20	100	0	100	50	14	0	36	1.43
68488942--68488991	10	5.0	10	81	18	68	50	14	0	36	1.43
68492165--68492221	30	1.9	30	100	0	114	33	5	0	61	1.18
68492165--68492230	30	2.4	26	85	10	78	33	6	0	60	1.21
68495590--68495623	15	2.2	16	89	5	52	32	0	0	67	0.91
68500636--68500745	27	4.0	27	80	3	96	37	19	20	22	1.94
68500651--68500745	27	3.5	28	82	4	122	36	21	21	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68500849--68500911	26	2.4	26	92	7	101	26	7	26	38	1.84
68502786--68502839	27	2.0	27	85	7	74	33	24	24	18	1.97
68507697--68507731	18	1.9	18	88	0	52	28	17	11	42	1.83
68513900--68514008	37	2.9	37	95	0	191	26	31	19	22	1.98
68514152--68514288	46	3.0	46	89	0	202	25	31	8	34	1.86
68514262--68514648	47	8.1	47	89	4	567	26	29	12	31	1.92
68514262--68514648	145	2.7	143	91	4	609	26	29	12	31	1.92
68514262--68514648	98	4.0	97	91	3	597	26	29	12	31	1.92
68514574--68514649	23	3.3	23	63	23	59	28	31	10	28	1.90
68523240--68523311	36	2.0	36	94	0	126	16	22	33	27	1.95
68529191--68529642	47	9.6	47	91	0	679	28	29	8	32	1.87
68532259--68532299	14	3.1	14	80	13	52	58	14	7	19	1.59
68537087--68537319	39	6.0	39	90	0	358	24	28	24	22	2.00
68539040--68539172	46	2.8	49	78	16	163	30	29	19	21	1.97
68539048--68539188	46	3.0	44	76	14	126	29	29	19	21	1.98
68546569--68546654	46	1.9	45	88	4	129	30	29	19	20	1.97
68559609--68559656	23	2.3	20	75	21	53	29	16	8	45	1.76
68559615--68559659	23	2.0	23	95	0	81	28	13	8	48	1.72
68559685--68559719	18	2.0	17	88	5	52	40	2	0	57	1.14
68559696--68559729	13	2.6	13	86	13	52	44	0	0	55	0.99
68574498--68574624	42	3.0	43	80	11	129	23	19	27	29	1.98
68574510--68574666	85	1.8	85	81	5	192	26	19	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68576381--68576605	40	5.7	39	81	3	227	27	27	21	24	1.99
68576381--68576565	79	2.3	80	86	0	246	28	27	21	23	1.99
68576381--68576605	79	2.8	78	81	9	224	27	27	21	24	1.99
68584787--68585033	27	9.1	27	81	1	244	36	20	17	25	1.94
68591233--68591273	22	2.0	20	85	9	55	21	36	29	12	1.90
68595134--68595180	24	2.0	23	83	4	58	10	29	6	53	1.60
68598191--68598432	27	8.9	27	87	0	313	32	21	6	40	1.78
68600900--68601089	27	7.0	27	86	0	263	28	22	8	39	1.84
68600900--68601089	54	3.5	54	88	0	299	28	22	8	39	1.84
68605789--68605856	28	2.4	28	87	0	100	23	14	29	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352