genome.fa.s11.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  153  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50194813--50195169	27	13.2	27	84	6	348	31	20	6	41	1.77
50194813--50195169	54	6.6	54	87	1	464	31	20	6	41	1.77
50194813--50195169	81	4.4	81	85	1	473	31	20	6	41	1.77
50195673--50195751	31	2.5	31	87	0	113	17	17	13	50	1.78
50195695--50195760	6	10.8	6	76	15	64	18	19	15	46	1.83
50195673--50195760	12	7.2	12	72	16	65	18	17	14	50	1.79
50197367--50197471	50	2.1	50	87	3	149	12	27	39	20	1.89
50198555--50198665	43	2.6	44	74	5	111	28	23	18	29	1.97
50200524--50200568	20	2.2	20	88	0	63	35	13	2	48	1.54
50202124--50202392	45	6.0	45	94	0	421	28	27	18	24	1.98
50202094--50202392	90	3.3	90	89	2	442	28	27	19	24	1.98
50208186--50209011	48	17.0	48	94	2	1373	35	6	26	31	1.82
50209152--50209250	37	2.7	37	95	0	171	24	20	30	25	1.99
50211149--50211375	45	5.1	45	89	2	300	26	29	19	24	1.98
50218377--50219156	48	16.0	48	92	2	1254	35	6	27	31	1.81
50218377--50219156	98	8.0	96	94	1	1254	35	6	27	31	1.81
50219294--50219392	37	2.7	37	95	0	171	24	20	30	25	1.99
50221282--50221506	45	5.1	45	86	4	282	26	28	20	24	1.99
50221282--50221490	89	2.4	87	84	5	262	25	28	22	23	1.99
50225089--50225140	26	2.0	26	96	0	95	28	34	23	13	1.92
50225195--50225246	26	2.0	26	96	0	95	28	34	23	13	1.92
50225057--50225322	105	2.6	103	90	3	421	30	30	20	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50225445--50225484	20	2.0	21	85	5	55	57	15	0	27	1.38
50225647--50225710	30	2.2	29	81	10	76	29	28	6	35	1.82
50225654--50225710	30	1.9	30	85	3	80	29	24	7	38	1.82
50258266--50258290	13	1.9	13	100	0	50	24	24	32	20	1.98
50272748--50272784	18	2.1	18	100	0	74	40	16	16	27	1.89
50276126--50276154	15	1.9	15	100	0	58	65	13	0	20	1.26
50282251--50282366	28	4.2	28	83	2	146	37	21	24	17	1.94
50282251--50282366	56	2.1	55	87	3	162	37	21	24	17	1.94
50283595--50283651	18	3.2	18	80	7	71	64	0	31	3	1.10
50288228--50288523	50	5.9	50	75	5	220	26	15	27	31	1.95
50288278--50288460	101	1.8	100	83	4	242	27	16	26	29	1.97
50298728--50298903	46	3.8	45	74	7	156	32	28	18	21	1.96
50300764--50300797	17	2.0	17	88	0	50	20	11	5	61	1.50
50312878--50313105	40	5.7	40	91	3	352	25	26	22	25	2.00
50317516--50317554	20	2.0	20	89	0	60	30	7	20	41	1.80
50319217--50319344	48	2.7	48	72	7	116	28	21	24	25	1.99
50319602--50319880	48	5.9	48	83	1	337	25	16	30	27	1.97
50319603--50319867	94	2.8	96	85	2	354	25	16	30	27	1.97
50321788--50321825	18	2.2	18	85	4	51	52	5	5	36	1.47
50328151--50328214	28	2.2	30	86	10	89	31	23	21	23	1.99
50328320--50328386	28	2.4	28	89	0	107	32	7	26	32	1.84
50329484--50329515	5	6.4	5	92	0	55	78	0	21	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50330706--50330749	20	2.2	20	95	0	79	34	4	18	43	1.70
50334912--50335136	40	5.6	40	88	3	328	23	22	27	27	1.99
50335393--50335435	22	2.0	21	82	17	52	32	16	13	37	1.88
50337418--50337454	17	2.1	19	85	15	60	27	24	37	10	1.88
50337423--50337461	17	2.3	17	100	0	78	28	23	35	12	1.91
50340043--50340170	29	4.5	28	86	2	157	33	24	12	29	1.92
50340043--50340169	28	4.5	28	86	3	155	33	23	12	29	1.92
50340042--50340170	57	2.3	57	84	2	170	33	24	12	29	1.92
50346213--50346437	40	5.6	40	85	7	298	23	21	27	27	1.99
50346213--50346437	80	2.8	80	90	4	330	23	21	27	27	1.99
50346213--50346437	120	1.9	120	88	5	348	23	21	27	27	1.99
50346695--50346738	22	2.0	21	83	16	54	31	18	13	36	1.90
50355245--50355405	22	7.1	22	76	9	130	25	22	17	34	1.95
50355281--50355405	44	2.8	45	85	4	146	27	22	16	34	1.95
50355579--50355656	20	3.9	19	78	9	75	38	11	12	37	1.80
50355579--50355678	40	2.5	40	77	9	107	39	11	13	37	1.79
50360181--50360218	16	2.4	16	86	4	60	55	2	7	34	1.43
50364363--50364685	48	6.7	48	75	7	251	27	21	28	22	1.99
50364367--50364682	144	2.2	143	80	5	334	27	21	28	23	1.99
50367037--50367088	12	4.3	12	82	4	52	53	13	13	19	1.72
50367046--50367092	6	7.8	6	87	0	67	53	10	17	19	1.72
50367254--50367368	27	4.3	26	87	5	140	36	21	21	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50367520--50367583	27	2.4	26	79	7	74	35	26	18	18	1.94
50367563--50367886	81	4.0	81	90	0	479	25	21	18	34	1.96
50367563--50367886	27	12.0	27	87	0	423	25	21	18	34	1.96
50369588--50369682	27	3.5	27	78	8	95	41	22	8	28	1.83
50369685--50369901	27	8.0	27	94	0	371	29	22	7	40	1.82
50369697--50369939	27	9.0	27	92	0	180	29	20	7	41	1.80
50369685--50369928	81	3.0	81	91	0	380	29	20	7	41	1.81
50369889--50369963	27	2.8	27	83	4	89	36	16	6	41	1.74
50369925--50370084	27	5.9	27	84	2	142	40	21	7	30	1.81
50369930--50370191	81	3.2	81	77	7	205	37	20	12	28	1.90
50370067--50370236	27	6.3	27	84	1	234	34	20	20	25	1.96
50369983--50370236	54	4.7	54	83	4	237	35	20	16	27	1.94
50370663--50370731	6	11.3	6	79	14	79	18	15	15	49	1.80
50372712--50372806	27	3.5	26	78	8	93	41	22	7	29	1.81
50372811--50372910	27	3.7	27	93	0	173	29	26	8	37	1.85
50373275--50373362	6	14.3	6	73	17	65	20	18	13	47	1.82
50373275--50373353	31	2.5	31	89	0	113	20	18	12	48	1.81
50375803--50375975	49	3.6	48	74	8	145	27	19	27	24	1.99
50380071--50380102	16	2.0	16	93	0	55	50	34	6	9	1.60
50384087--50384121	8	4.4	8	92	0	61	51	22	22	2	1.61
50384346--50384446	29	3.5	29	82	1	123	26	15	28	28	1.96
50384346--50384455	57	1.9	57	83	1	139	27	15	29	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50388463--50388634	67	2.6	65	80	7	168	31	18	27	22	1.97
50392251--50392359	29	3.9	28	84	3	121	28	13	30	27	1.94
50392254--50392368	57	2.0	56	83	5	142	27	13	31	26	1.94
50397919--50398011	42	2.2	42	85	11	120	30	26	16	26	1.96
50397964--50398239	48	5.8	47	87	1	372	29	25	18	26	1.98
50397964--50398239	143	1.9	144	89	2	430	29	25	18	26	1.98
50399218--50399261	20	2.2	20	91	0	70	15	29	29	25	1.96
50399224--50399270	20	2.4	19	82	10	58	12	25	31	29	1.93
50400796--50400991	43	4.6	43	75	5	182	30	26	16	27	1.97
50408830--50408895	33	2.0	33	96	0	123	40	15	7	36	1.75
50423448--50423486	20	1.9	21	89	5	62	79	2	7	10	1.02
50424715--50424774	18	3.3	18	69	17	52	46	10	11	31	1.73
50429563--50429601	20	1.9	21	89	5	62	79	2	7	10	1.02
50430831--50430907	18	4.3	18	77	6	66	40	11	14	33	1.82
50433174--50433389	38	5.2	38	75	18	198	31	24	14	29	1.95
50433219--50433425	47	4.6	47	82	11	270	31	24	14	29	1.95
50433181--50433387	85	2.4	85	96	0	378	30	25	14	29	1.95
50433304--50433425	48	2.6	47	90	1	181	31	23	14	29	1.95
50436187--50436405	46	4.7	46	79	9	223	24	29	18	28	1.98
50439156--50439204	24	2.1	22	88	7	71	24	2	4	69	1.17
50444538--50444649	27	4.2	26	85	7	143	37	23	24	15	1.93
50444538--50444649	54	2.1	54	88	3	163	37	23	24	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50449137--50449326	47	4.0	47	91	0	290	34	11	28	25	1.91
50449180--50449305	25	5.3	25	60	24	65	33	11	27	27	1.91
50449162--50449280	22	5.1	22	62	28	59	31	13	30	24	1.93
50449296--50449481	48	3.8	48	92	2	293	37	6	25	31	1.81
50449612--50449720	37	2.9	37	94	0	182	22	19	32	26	1.97
50455475--50455509	10	3.4	10	84	7	52	54	8	8	28	1.60
50456565--50456676	27	4.2	26	79	14	104	38	21	24	16	1.93
50456565--50456676	54	2.1	54	84	3	145	38	21	24	16	1.93
50462352--50462424	35	2.1	35	94	0	128	26	21	10	41	1.86
50469290--50469316	9	3.0	9	100	0	54	55	22	0	22	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352