genome.fa.s11.2.7.7.80.10.50.1000.298.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  298  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97646935--97646972	20	1.9	19	94	5	67	47	0	0	52	1.00
97647859--97647901	14	3.3	13	79	20	54	27	0	11	60	1.31
97648895--97648964	30	2.3	29	81	16	72	51	5	10	32	1.59
97651759--97651845	15	6.0	14	75	15	63	27	8	0	64	1.21
97651758--97651875	44	2.7	44	81	14	115	28	8	0	62	1.24
97651717--97651843	15	8.9	14	70	20	61	25	7	2	64	1.31
97656342--97656373	15	2.1	16	88	11	50	75	0	3	21	0.95
97657128--97657154	7	3.9	7	100	0	54	55	0	0	44	0.99
97657312--97657345	18	1.9	18	94	5	61	55	8	0	35	1.31
97657424--97657449	3	8.7	3	100	0	52	30	34	0	34	1.58
97657454--97657504	3	17.0	3	100	0	102	66	0	0	33	0.92
97658275--97658369	45	2.3	42	77	15	115	38	7	5	48	1.54
97661990--97662168	42	4.2	44	76	15	162	24	17	25	32	1.96
97662056--97662168	43	2.7	42	77	12	106	25	17	25	30	1.97
97670804--97670874	35	2.0	35	89	5	108	29	23	9	36	1.87
97672896--97672948	26	2.0	26	85	7	72	37	22	15	24	1.92
97688651--97688698	21	2.3	21	80	16	55	58	0	0	41	0.98
97689802--97689861	7	8.3	7	78	14	50	36	0	0	63	0.95
97689806--97689867	14	4.2	14	79	6	61	35	0	1	62	1.05
97689849--97689886	19	2.0	19	90	10	60	28	0	2	68	1.03
97689810--97689889	27	2.9	28	80	9	92	36	0	2	61	1.10
97689821--97689926	48	2.2	48	83	3	133	36	0	2	60	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97693304--97693364	23	2.8	20	75	20	59	65	4	0	29	1.13
97693400--97693426	12	2.2	12	100	0	54	77	0	0	22	0.76
97696310--97696343	18	1.9	17	88	5	50	38	11	20	29	1.88
97702170--97702281	38	2.8	40	75	10	106	29	25	20	24	1.99
97703840--97703896	5	11.0	5	78	14	62	56	1	0	42	1.10
97703839--97703894	12	4.5	12	81	16	69	55	1	0	42	1.10
97703841--97703896	26	2.2	26	90	6	69	55	1	0	42	1.10
97706714--97706887	90	1.9	90	83	2	224	28	27	18	25	1.98
97706898--97707020	48	2.6	49	80	2	124	30	28	17	22	1.97
97721379--97721432	15	3.7	15	78	14	67	55	1	0	42	1.10
97721380--97721434	28	2.0	28	85	7	76	56	1	0	41	1.10
97732092--97732152	31	2.0	31	100	0	122	59	6	9	24	1.53
97733083--97733131	23	2.2	22	82	10	55	51	2	8	38	1.43
97733093--97733137	22	2.0	23	86	4	65	46	2	6	44	1.42
97742762--97742813	24	2.2	24	82	6	61	19	7	26	46	1.77
97747246--97747293	23	2.1	23	84	7	62	60	22	6	10	1.52
97761911--97762139	111	2.1	111	97	0	431	36	16	20	27	1.93
97767695--97767860	27	6.2	26	85	7	215	15	24	23	36	1.94
97767695--97767860	54	3.1	54	93	1	280	15	24	23	36	1.94
97772302--97772359	15	3.9	15	82	8	73	12	13	15	58	1.63
97778609--97778702	42	2.2	43	80	1	109	24	14	26	34	1.94
97786024--97786058	18	1.9	18	88	0	52	37	0	42	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97791537--97791903	50	7.7	49	76	9	275	23	30	18	27	1.97
97798133--97798172	21	2.0	21	90	5	64	22	30	37	10	1.87
97798536--97798590	28	1.9	29	82	10	69	27	38	27	7	1.83
97799371--97799728	48	7.6	46	78	13	272	23	30	18	27	1.98
97801124--97801149	2	13.0	2	100	0	52	50	50	0	0	1.00
97801615--97802175	155	3.6	155	83	0	622	30	22	18	28	1.97
97804062--97804087	6	4.3	6	100	0	52	15	15	0	69	1.20
97809077--97809139	31	2.0	31	96	0	117	38	14	15	31	1.88
97814944--97815178	48	4.9	48	76	2	229	26	29	18	25	1.98
97814944--97815178	96	2.4	96	83	0	281	26	29	18	25	1.98
97820262--97820338	34	2.3	34	93	0	127	27	18	25	28	1.98
97839399--97839437	19	2.1	19	95	0	69	15	5	28	51	1.64
97843539--97843576	20	1.9	20	88	0	58	50	2	0	47	1.15
97850299--97850367	24	2.9	24	95	0	120	34	4	40	20	1.72
97851804--97851914	27	4.1	27	88	1	143	15	23	21	39	1.91
97857093--97857123	11	2.8	11	95	0	53	45	0	9	45	1.36
97868394--97868507	43	2.7	43	80	5	124	24	16	26	32	1.96
97871382--97871441	29	2.1	29	96	0	111	30	1	20	48	1.59
97871546--97871580	18	1.9	18	94	0	61	45	14	14	25	1.82
97871796--97871902	34	3.1	34	86	0	151	32	19	20	27	1.97
97874721--97874778	21	2.8	21	86	2	82	55	8	22	13	1.66
97877164--97877189	12	2.2	12	100	0	52	0	7	0	92	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97877161--97877189	14	2.0	15	93	6	51	0	10	0	89	0.48
97877618--97877928	170	1.8	172	80	2	385	26	13	22	37	1.91
97880006--97880045	21	1.9	21	84	0	53	32	25	22	20	1.98
97887868--97887935	34	2.0	34	100	0	136	32	14	20	32	1.93
97892592--97892634	22	2.0	21	86	4	59	27	6	0	65	1.18
97893289--97893387	52	1.9	52	95	0	180	36	8	8	47	1.63
97899001--97899138	54	2.5	53	91	4	215	30	19	20	29	1.97
97900497--97900597	38	2.7	37	74	18	95	39	1	1	56	1.22
97900567--97900616	23	2.3	22	90	10	77	44	0	2	54	1.11
97900579--97900621	23	1.9	23	85	4	61	46	0	2	51	1.13
97900905--97900943	13	2.9	14	80	3	53	76	0	7	15	0.99
97901983--97902011	6	5.0	6	91	8	51	17	17	17	48	1.82
97901983--97902011	11	2.5	12	94	5	51	17	17	17	48	1.82
97901992--97902101	45	2.5	45	88	4	152	20	17	19	42	1.89
97903766--97903814	22	2.2	22	96	0	89	30	26	12	30	1.92
97906488--97906587	51	2.0	51	83	0	128	31	25	19	25	1.98
97908939--97908982	7	6.4	7	87	12	65	27	0	0	72	0.85
97910819--97910893	29	2.5	30	76	8	73	58	8	10	22	1.57
97952251--97952471	39	5.7	40	83	9	253	24	23	27	24	2.00
97952304--97952504	78	2.6	79	82	7	209	26	21	27	24	1.99
97960332--97960516	79	2.3	81	83	7	227	24	22	27	24	2.00
97960333--97960516	40	4.6	40	82	9	207	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97960385--97960549	79	2.1	79	83	6	201	26	21	27	24	1.99
97964806--97964897	43	2.1	43	88	4	132	52	13	5	29	1.62
97965377--97965408	12	2.7	12	95	0	55	0	31	0	68	0.90
97967119--97967160	22	1.9	21	85	9	57	35	0	0	64	0.94
97968218--97968260	12	3.7	12	81	6	52	67	0	0	32	0.91
97968219--97968269	23	2.2	24	82	3	59	66	1	0	31	1.03
97976302--97976345	2	22.0	2	100	0	88	50	0	0	50	1.00
97980110--97980195	43	2.0	43	88	0	127	55	0	23	20	1.43
97980137--97980180	15	2.8	17	74	19	51	54	0	22	22	1.45
97981524--97981628	49	2.2	49	84	5	142	43	6	26	22	1.78
97982432--97982480	22	2.2	22	77	0	53	16	16	10	57	1.65
97983718--97983861	27	5.3	27	82	0	180	28	24	9	38	1.86
97983893--97984101	27	7.7	27	70	8	127	40	18	8	33	1.80
97983893--97984094	54	3.7	54	72	5	172	41	16	8	33	1.79
97984096--97984197	27	3.8	27	70	10	73	38	19	19	22	1.94
97984890--97984956	20	3.3	20	89	4	100	40	10	17	31	1.84
97985006--97985180	26	6.8	26	89	0	246	26	22	22	28	1.99
97985006--97985180	52	3.4	52	94	1	300	26	22	22	28	1.99
97985398--97985536	31	4.5	31	88	0	206	31	17	22	28	1.96
97990107--97990162	27	2.1	27	87	6	80	12	17	21	48	1.80
97990424--97990524	29	3.5	29	80	6	98	25	30	16	26	1.97
97991989--97992021	16	2.1	16	94	0	57	15	6	30	48	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97997789--97997851	29	2.2	29	82	0	72	25	31	14	28	1.95
98021473--98021912	47	9.3	47	94	2	654	27	30	9	32	1.89
98023912--98024135	104	2.2	104	93	1	378	31	31	19	17	1.95
98030833--98031056	104	2.2	104	93	1	378	31	31	19	17	1.95
98033742--98033847	33	3.2	33	78	6	126	34	20	11	33	1.88
98034502--98034543	21	2.0	21	81	9	50	33	16	0	50	1.46
98036716--98036778	31	2.0	31	90	0	99	23	25	15	34	1.95
98036992--98037068	25	3.2	24	89	5	120	31	20	16	31	1.95
98037117--98037183	20	3.3	20	93	0	116	32	20	11	34	1.90
98037117--98037172	11	5.5	11	71	16	57	32	19	12	35	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352