genome.fa.s11.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  135  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43617529--43617554	7	3.7	7	100	0	52	88	0	11	0	0.52
43620547--43620687	72	2.0	72	84	5	187	29	24	12	33	1.92
43621126--43621155	14	2.1	14	93	0	51	50	26	0	23	1.50
43621508--43621604	41	2.4	42	81	8	121	16	18	20	44	1.87
43627375--43627434	28	2.2	26	77	11	66	26	26	11	35	1.91
43627382--43627460	28	2.8	28	86	0	104	29	25	11	34	1.91
43632411--43632630	28	7.8	28	72	8	142	31	34	15	17	1.92
43632390--43632632	57	4.2	57	87	2	337	31	35	15	17	1.91
43634473--43634532	28	2.2	26	77	11	66	26	26	11	35	1.91
43634487--43634558	28	2.6	28	88	0	99	29	27	12	30	1.93
43638125--43638380	130	2.0	130	90	0	404	46	18	19	16	1.85
43638143--43638419	130	2.1	130	85	1	358	48	16	19	15	1.81
43641560--43641612	13	4.2	13	77	20	58	33	1	3	60	1.26
43641823--43641875	13	4.2	13	77	20	58	60	3	1	33	1.26
43641818--43641863	13	3.2	14	84	12	58	58	4	2	34	1.30
43643367--43643405	11	3.5	11	79	6	51	58	0	5	35	1.20
43651304--43651473	45	3.7	47	77	17	169	27	29	21	21	1.99
43651304--43651473	93	1.8	93	94	1	306	27	29	21	21	1.99
43651891--43651950	30	2.0	30	90	0	93	30	25	8	36	1.85
43658856--43659023	91	1.8	92	94	1	302	28	29	20	21	1.98
43658851--43659018	45	3.7	45	76	16	193	29	29	19	22	1.98
43659441--43659500	30	2.0	30	90	0	93	30	25	8	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43659779--43659841	33	1.9	33	100	0	126	33	23	20	22	1.97
43668990--43669064	38	1.9	40	86	5	109	22	24	26	26	2.00
43669047--43669235	43	4.4	43	85	4	249	14	22	31	31	1.94
43746390--43746596	40	5.4	38	81	9	120	24	27	23	24	2.00
43746419--43746596	40	4.6	39	81	10	197	24	27	23	24	2.00
43754429--43754637	41	5.2	40	85	4	136	24	27	23	23	2.00
43754452--43754637	41	4.6	41	87	4	245	23	26	24	25	2.00
43761915--43762000	39	2.2	39	89	0	127	29	9	15	46	1.76
43762090--43762143	26	2.1	26	100	0	108	35	7	14	42	1.74
43768125--43768174	25	2.0	25	88	7	75	34	10	14	42	1.78
43772258--43772311	27	2.0	27	96	0	99	31	7	24	37	1.83
43779918--43779979	10	6.7	9	78	10	54	62	1	0	35	1.05
43779929--43779956	8	3.5	8	100	0	56	57	0	0	42	0.99
43785961--43786530	48	11.9	48	77	6	530	27	18	28	24	1.98
43791764--43791871	26	4.2	26	91	0	180	32	8	24	35	1.85
43793494--43793661	27	6.2	27	84	6	173	16	22	23	36	1.94
43793494--43793661	54	3.1	54	87	3	232	16	22	23	36	1.94
43793494--43793661	81	2.1	81	82	6	198	16	22	23	36	1.94
43793573--43793679	27	4.0	26	84	12	119	19	25	20	34	1.96
43796244--43796272	14	2.0	15	93	6	51	24	0	20	55	1.44
43809497--43809730	115	2.0	116	94	4	409	33	11	22	32	1.90
43810191--43810747	48	11.6	48	78	4	554	28	19	29	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43821300--43821378	37	2.1	37	86	4	106	26	30	17	25	1.97
43821497--43822209	47	15.1	47	95	1	1192	29	29	8	32	1.87
43821552--43822209	190	3.5	190	97	0	1230	29	28	8	32	1.87
43828005--43828038	11	2.9	12	91	8	61	67	0	14	17	1.23
43828182--43828239	26	2.2	26	87	0	80	41	8	18	31	1.81
43845814--43845856	21	2.0	22	86	4	61	58	4	4	32	1.39
43852223--43852267	22	2.0	22	100	0	90	46	4	26	22	1.70
43857533--43857703	46	3.7	45	76	7	164	22	28	19	29	1.98
43864660--43864869	46	4.6	43	77	14	181	24	30	17	27	1.97
43864606--43864875	94	2.9	91	76	10	253	23	29	17	28	1.97
43879123--43879235	25	4.6	24	69	15	61	27	23	18	30	1.98
43879103--43879204	49	2.1	49	88	0	150	24	25	19	30	1.98
43879103--43879184	24	3.4	24	76	15	87	24	25	20	29	1.99
43886864--43886996	49	2.7	49	81	3	151	26	22	20	30	1.98
43886864--43886991	25	5.2	24	70	11	89	25	22	21	30	1.99
43897978--43898027	21	2.3	22	82	6	66	16	30	38	16	1.90
43899823--43899867	20	2.2	20	88	7	65	33	15	2	48	1.57
43911567--43911600	16	2.1	17	89	10	54	23	14	0	61	1.33
43911996--43912024	14	2.1	14	100	0	58	34	31	0	34	1.58
43915848--43915913	28	2.4	28	82	2	89	36	25	22	15	1.93
43916309--43916369	27	2.3	27	82	5	70	26	16	21	36	1.94
43916321--43916373	27	2.0	27	88	0	79	26	15	22	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43918033--43918102	28	2.5	28	85	0	104	37	8	24	30	1.85
43918335--43918589	127	2.0	127	100	0	510	31	10	24	32	1.90
43920233--43920503	29	9.4	28	69	8	154	18	17	34	29	1.94
43920203--43920503	57	5.2	57	90	0	467	18	17	34	29	1.94
43925401--43925462	28	2.2	28	91	0	106	38	9	22	29	1.86
43925695--43925949	127	2.0	127	100	0	510	31	10	24	32	1.90
43933355--43933622	104	2.6	105	91	1	423	30	30	20	19	1.97
43933950--43934013	30	2.2	29	81	10	76	29	28	6	35	1.82
43933957--43934013	30	1.9	30	85	3	80	29	24	7	38	1.82
43936006--43936055	16	3.2	16	94	2	84	58	0	0	42	0.98
43936006--43936055	5	9.6	5	91	8	82	58	0	0	42	0.98
43937003--43937173	85	2.0	85	95	0	306	42	18	3	35	1.68
43946703--43946940	99	2.4	100	86	3	320	28	26	18	26	1.98
43946703--43946940	49	4.8	49	87	3	307	28	26	18	26	1.98
43947249--43947286	14	2.5	16	87	8	53	31	21	2	44	1.66
43955019--43955101	25	3.3	24	81	5	85	27	48	6	18	1.71
43955560--43955623	29	2.1	31	83	11	80	35	0	3	60	1.12
43955601--43955625	8	3.1	8	100	0	50	24	0	0	76	0.80
43960378--43960418	21	1.9	22	85	5	57	31	24	4	39	1.76
43960595--43960706	40	2.8	39	75	11	100	31	27	18	22	1.97
43960834--43960896	28	2.2	28	91	0	99	30	25	11	33	1.90
43965180--43965841	96	6.9	95	94	2	1060	34	7	27	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43965180--43965841	49	13.8	49	93	2	1071	34	7	27	29	1.85
43965200--43965841	194	3.3	193	95	1	1112	34	7	27	29	1.85
43965915--43966030	37	3.1	37	94	1	196	24	18	31	26	1.97
43967374--43967421	25	1.9	25	86	0	69	31	22	16	29	1.96
43967554--43967625	26	2.8	26	91	2	110	25	23	22	29	1.99
43967553--43967638	26	3.4	26	81	13	92	27	22	22	27	1.99
43967845--43967928	31	2.7	31	90	1	125	32	16	26	25	1.96
43972783--43973009	40	5.7	40	91	4	370	25	27	22	24	1.99
43972750--43973005	79	3.2	80	90	5	380	25	27	22	24	2.00
43972783--43973009	119	1.9	119	93	1	393	25	27	22	24	1.99
43980913--43981138	40	5.7	40	91	5	370	25	27	22	24	2.00
43980880--43981134	79	3.2	79	91	4	383	24	27	22	24	2.00
43985264--43985306	17	2.5	17	81	7	52	51	0	2	46	1.13
43985536--43985577	17	2.5	17	80	3	50	47	2	0	50	1.14
43985993--43986017	9	2.8	9	100	0	50	40	0	0	60	0.97
43987948--43988470	26	20.1	26	75	7	301	40	20	15	23	1.90
43987948--43988470	52	10.0	52	76	6	342	40	20	15	23	1.90
43987944--43988248	78	3.9	78	83	1	362	39	22	15	22	1.92
43994404--43994500	46	2.2	46	85	7	128	38	23	5	32	1.77
43994479--43994580	16	6.4	16	87	0	141	28	24	4	42	1.75
43994486--43994581	32	3.0	32	90	0	156	28	26	4	41	1.74
43999817--43999861	2	22.5	2	100	0	90	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44001580--44001605	5	5.2	5	100	0	52	80	0	0	19	0.71
44005059--44005107	5	9.8	5	100	0	98	59	0	0	40	0.98
44007101--44007144	19	2.4	19	85	7	56	50	0	9	40	1.34
44007237--44007267	3	10.3	3	92	0	53	38	0	0	61	0.96
44007236--44007265	15	2.0	15	100	0	60	40	0	0	60	0.97
44017657--44017827	92	1.8	93	94	1	308	21	21	29	27	1.99
44019145--44019267	40	3.1	40	86	2	176	24	23	27	24	2.00
44024030--44024144	44	2.5	46	80	2	126	26	18	14	40	1.89
44027732--44027778	24	2.0	22	84	8	58	44	4	6	44	1.49
44032759--44032806	15	3.1	15	84	3	60	77	2	0	20	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352