genome.fa.s11.2.7.7.80.10.50.1000.287.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  287  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94056172--94056462	88	3.3	88	77	6	250	26	19	21	33	1.97
94056269--94056465	44	4.5	44	77	3	191	25	16	22	34	1.95
94056798--94056829	14	2.3	14	94	0	55	40	9	12	37	1.75
94061850--94061911	24	2.6	24	100	0	124	16	20	19	43	1.88
94065958--94066024	26	2.6	27	72	11	68	56	0	10	32	1.33
94066097--94066206	27	4.2	26	78	13	93	61	2	4	30	1.30
94066126--94066206	23	3.3	23	78	14	90	65	2	3	28	1.22
94079720--94079780	10	5.9	10	77	11	61	36	11	19	32	1.88
94079720--94079796	21	3.7	20	81	5	82	35	12	18	33	1.89
94079828--94079898	25	2.9	24	78	14	65	28	25	22	23	2.00
94087886--94087947	24	2.5	25	89	10	101	37	19	14	29	1.91
94087992--94088055	10	6.3	10	77	12	60	34	10	20	34	1.88
94087996--94088071	21	3.7	20	80	5	80	34	13	18	34	1.89
94090096--94090152	17	3.3	17	69	11	53	49	10	12	28	1.73
94090208--94090265	30	1.9	30	85	0	80	36	6	27	29	1.83
94110701--94110925	40	5.6	39	83	6	256	24	21	27	25	1.99
94123290--94123465	56	3.1	56	99	0	343	45	9	22	22	1.80
94124595--94124819	79	2.8	80	83	9	289	24	22	27	25	2.00
94124595--94124819	40	5.7	40	85	7	289	24	22	27	25	2.00
94124595--94124842	119	2.1	119	82	8	292	25	21	27	25	2.00
94135936--94135979	19	2.3	19	92	0	70	50	13	15	20	1.78
94143600--94143643	19	2.3	19	96	0	79	47	13	18	20	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94145450--94145519	25	2.8	25	93	0	113	25	21	24	28	1.99
94146332--94146406	27	2.8	27	76	11	73	21	18	21	38	1.93
94146447--94146544	27	3.6	27	75	15	83	33	10	18	37	1.84
94146451--94146580	56	2.4	55	80	5	138	32	7	18	41	1.79
94146510--94146670	27	5.8	26	73	11	99	29	9	19	40	1.84
94146669--94146760	27	3.4	27	87	0	130	41	6	22	29	1.79
94149224--94149266	6	7.0	6	78	5	50	20	0	4	74	1.00
94167826--94167937	52	2.2	52	88	0	161	30	21	34	13	1.92
94176796--94176824	15	1.9	15	100	0	58	82	0	0	17	0.66
94177491--94177522	15	2.0	17	88	11	50	56	3	0	40	1.15
94177709--94177748	20	2.0	21	85	5	55	65	2	2	30	1.19
94177789--94177824	14	2.4	14	90	9	54	63	0	2	33	1.08
94177789--94177836	16	3.1	15	85	11	62	64	2	2	31	1.16
94178564--94178613	22	2.3	22	79	6	57	38	14	14	34	1.85
94189101--94189230	47	2.8	47	83	4	163	22	16	27	33	1.96
94193313--94193518	28	7.4	28	95	0	351	32	28	13	25	1.94
94201544--94201748	28	7.5	28	93	3	319	32	28	13	25	1.94
94201544--94201748	81	2.5	83	93	3	351	32	28	13	25	1.94
94201544--94201748	109	1.9	109	93	2	358	32	28	13	25	1.94
94208968--94209250	49	5.9	49	92	2	452	28	30	8	32	1.87
94209217--94209282	32	2.1	32	100	0	132	31	30	6	31	1.82
94209168--94209329	81	2.0	79	96	2	297	31	29	6	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94209248--94209506	47	5.4	47	95	2	464	30	28	6	33	1.84
94209248--94209506	96	2.7	96	97	2	488	30	28	6	33	1.84
94208979--94209506	273	1.9	272	95	0	950	29	29	8	32	1.86
94223235--94223265	2	15.5	2	93	0	53	0	45	0	54	0.99
94225976--94226066	46	2.0	46	87	8	132	24	24	18	32	1.97
94234452--94234509	30	1.9	30	85	0	80	29	20	5	44	1.73
94238436--94238473	11	3.6	11	86	13	62	39	13	18	28	1.88
94238521--94238591	25	2.8	25	87	6	90	26	23	22	26	2.00
94238812--94238894	30	2.7	31	87	3	116	30	19	26	24	1.98
94238812--94238889	31	2.6	30	89	2	111	29	20	26	23	1.99
94240748--94240971	40	5.6	40	83	6	283	26	26	22	24	2.00
94240748--94240971	83	2.8	79	85	5	288	26	26	22	24	2.00
94243940--94244018	37	2.1	37	88	0	113	25	30	18	25	1.98
94244137--94244509	47	7.9	47	95	0	647	29	30	8	32	1.86
94250362--94250444	43	1.9	43	100	0	166	40	7	25	26	1.81
94267784--94267862	37	2.1	37	88	4	115	25	30	18	25	1.98
94267981--94268323	47	7.3	47	94	0	578	29	30	8	32	1.87
94272150--94272541	40	9.8	40	91	1	588	26	28	20	24	1.99
94273753--94273830	36	2.1	37	90	2	122	25	30	19	24	1.98
94273949--94274500	47	11.7	47	97	0	989	28	30	8	32	1.87
94280389--94280434	24	1.9	24	100	0	92	30	15	13	41	1.85
94280577--94280614	13	3.0	13	80	7	51	34	26	18	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94280564--94280650	25	3.5	25	80	3	95	34	18	17	29	1.94
94284436--94284489	25	2.2	25	86	6	74	40	20	11	27	1.86
94306408--94306437	15	2.0	15	100	0	60	33	13	20	33	1.91
94312970--94313057	37	2.4	37	84	0	104	29	18	23	28	1.98
94313008--94313120	47	2.8	38	73	26	106	26	20	26	26	1.99
94313037--94313151	47	2.4	47	98	0	221	27	20	25	26	1.99
94313588--94313630	19	2.3	19	100	0	86	53	30	0	16	1.43
94314273--94314341	27	2.6	27	83	0	75	26	26	17	30	1.97
94314327--94314386	23	2.6	23	94	0	102	21	36	20	21	1.95
94323009--94323056	21	2.3	21	88	0	69	37	12	20	29	1.90
94323009--94323039	10	3.0	10	95	4	53	38	12	19	29	1.89
94326818--94326995	48	3.7	48	82	1	160	26	19	24	30	1.98
94326818--94326993	96	1.8	96	81	0	217	26	19	24	30	1.98
94338745--94338792	25	1.9	25	86	0	69	33	25	16	25	1.96
94338836--94338874	20	2.0	20	100	0	78	35	12	20	30	1.90
94338925--94339041	23	5.0	24	89	2	175	27	19	21	31	1.97
94338925--94339065	47	3.0	47	84	6	178	27	20	21	29	1.98
94338926--94339065	23	6.0	23	85	5	174	27	20	22	30	1.98
94339257--94339351	31	3.1	31	90	0	154	40	15	21	23	1.91
94358569--94358611	21	2.0	21	95	0	77	23	6	13	55	1.62
94358572--94358617	21	2.2	21	88	0	65	28	6	10	54	1.60
94373981--94374010	8	3.8	8	90	0	51	0	40	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94375296--94375352	25	2.2	25	84	9	71	40	0	5	54	1.23
94382049--94382074	11	2.4	11	100	0	52	26	0	0	73	0.84
94384672--94384713	22	1.9	22	85	9	59	21	21	11	45	1.84
94386780--94386807	14	2.0	14	100	0	56	42	14	7	35	1.73
94387326--94387461	23	6.0	23	81	9	145	22	22	19	34	1.97
94387326--94387461	45	3.0	45	83	10	170	22	22	19	34	1.97
94403237--94403290	21	2.5	22	93	3	85	25	11	11	51	1.70
94403244--94403290	21	2.2	21	100	0	94	27	12	12	46	1.78
94407115--94407287	46	3.7	46	80	13	219	21	21	28	28	1.98
94407112--94407282	93	1.8	93	96	0	315	21	21	29	28	1.98
94419803--94419956	27	6.0	27	85	13	220	26	11	29	33	1.91
94419803--94419940	46	2.7	49	86	13	183	25	11	30	32	1.91
94427959--94428166	28	7.5	28	93	0	337	25	13	27	33	1.93
94434140--94434177	20	1.9	19	85	15	51	26	23	13	36	1.91
94441795--94442106	42	7.4	42	84	2	376	26	17	23	32	1.97
94442969--94443107	37	3.8	37	96	0	233	26	30	17	24	1.97
94443226--94443573	47	7.3	47	93	3	563	29	29	8	32	1.86
94443226--94443573	96	3.7	94	93	3	563	29	29	8	32	1.86
94443226--94443573	143	2.4	143	94	1	594	29	29	8	32	1.86
94461789--94462092	47	6.4	47	90	3	416	32	9	30	27	1.88
94467866--94468361	42	11.7	42	83	2	575	24	20	25	30	1.99
94467869--94468353	127	3.8	127	87	2	595	24	20	24	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94474297--94474658	46	7.8	46	72	11	299	22	19	27	29	1.98
94474345--94474604	47	5.6	47	72	15	225	24	18	26	29	1.98
94474296--94474651	93	3.8	93	91	0	577	23	19	27	29	1.98
94478118--94478252	39	3.5	39	85	0	189	45	23	5	25	1.73
94481704--94481761	26	2.2	26	81	6	73	43	25	13	17	1.86
94485232--94485299	22	2.9	22	83	16	75	29	19	26	25	1.98
94485172--94485579	201	2.0	201	91	0	665	32	20	19	27	1.97
94485455--94485503	23	2.1	23	88	7	73	38	18	20	22	1.93
94485709--94485769	32	1.9	32	100	0	122	37	6	11	44	1.67
94495074--94495122	10	4.9	10	85	9	64	22	8	2	67	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352