genome.fa.s11.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  126  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40324664--40324710	25	1.9	25	91	4	78	46	21	4	27	1.69
40330986--40331097	43	2.6	43	78	10	140	31	16	23	29	1.96
40334099--40334363	47	5.6	47	90	3	379	29	29	8	32	1.86
40334099--40334363	49	5.6	49	90	4	386	29	29	8	32	1.86
40337664--40337704	16	2.6	16	92	0	73	29	41	19	9	1.83
40340601--40340670	15	4.7	15	70	7	52	44	22	11	21	1.84
40345932--40346003	30	2.4	29	81	4	81	23	31	31	12	1.92
40351213--40351261	6	7.8	6	86	8	71	77	4	0	18	0.92
40351278--40351373	9	10.7	9	78	4	68	26	6	20	46	1.74
40351286--40351364	18	4.4	18	82	6	79	24	7	22	45	1.78
40351278--40351372	27	3.5	27	78	5	93	26	6	21	46	1.75
40351633--40351672	5	8.0	5	94	0	71	20	2	0	77	0.88
40357599--40357643	23	1.9	24	90	4	74	33	6	13	46	1.69
40357726--40357761	18	1.9	19	88	5	56	50	8	0	41	1.33
40358936--40358966	16	1.9	16	100	0	62	35	25	6	32	1.82
40359420--40359507	42	2.1	42	95	0	158	46	6	9	37	1.62
40359443--40359510	24	3.1	24	66	24	67	45	8	7	38	1.63
40362994--40363090	39	2.5	39	80	5	99	26	29	23	19	1.98
40363061--40363186	39	3.2	39	93	0	207	26	30	21	22	1.99
40370732--40370814	25	3.4	25	80	8	98	34	21	25	18	1.96
40375418--40375850	47	9.1	47	92	2	668	32	9	29	28	1.88
40375418--40375850	96	4.5	96	91	2	685	32	9	29	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40375418--40375850	143	3.0	143	92	2	708	32	9	29	28	1.88
40375969--40376047	37	2.1	37	85	0	104	25	17	30	26	1.97
40382429--40382502	25	3.0	25	87	0	76	36	14	25	22	1.93
40382438--40382533	25	3.8	25	84	0	102	36	14	23	25	1.93
40382473--40382554	25	3.3	25	87	0	110	35	13	25	25	1.93
40385945--40385993	16	3.1	16	94	2	82	34	0	0	65	0.93
40385951--40386295	3	114.3	3	66	23	131	31	4	3	60	1.33
40386019--40386295	3	90.7	3	68	21	132	32	5	3	59	1.35
40386475--40386528	3	17.7	3	85	11	74	37	0	0	62	0.95
40391692--40391759	29	2.3	28	77	7	73	33	1	1	63	1.13
40391889--40391922	18	2.0	16	88	11	50	73	0	0	26	0.83
40398927--40398980	24	2.2	24	84	12	67	29	37	16	16	1.91
40400976--40401020	21	2.2	20	84	7	56	11	15	40	33	1.83
40401120--40401211	43	2.1	43	84	4	114	20	31	22	25	1.98
40403730--40403763	12	2.8	12	91	8	52	20	2	0	76	0.92
40406009--40406072	31	2.1	31	93	0	110	25	4	17	53	1.63
40408868--40408930	32	2.0	32	96	0	117	52	15	9	22	1.72
40416165--40416393	48	4.9	48	74	9	193	25	19	27	28	1.99
40423702--40423829	43	3.0	43	80	4	134	32	23	14	29	1.94
40423813--40423871	22	2.5	22	81	10	55	28	23	11	35	1.91
40425242--40425305	32	2.0	32	96	0	119	51	15	12	20	1.75
40429241--40429269	15	1.9	15	100	0	58	41	0	20	37	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40433552--40433588	19	1.9	19	94	0	65	21	35	16	27	1.94
40439850--40439915	32	2.1	32	100	0	132	33	15	10	40	1.81
40441919--40442207	54	5.5	53	71	11	202	36	17	22	23	1.94
40441872--40442087	101	2.1	101	90	0	342	37	13	21	27	1.92
40442022--40442207	55	3.5	53	79	6	171	36	18	22	23	1.95
40443592--40443632	13	3.2	13	89	0	64	19	31	31	17	1.95
40445069--40445253	40	4.7	40	80	6	198	25	27	22	24	2.00
40454135--40454233	28	3.5	29	81	12	107	29	28	15	27	1.96
40465686--40465861	47	3.6	47	75	13	192	36	11	23	27	1.90
40465736--40466047	54	5.9	55	74	12	267	35	16	24	24	1.95
40465689--40465912	101	2.2	102	92	1	371	36	13	23	26	1.92
40465840--40466036	55	3.6	54	81	7	238	35	18	24	21	1.95
40467677--40467707	14	2.3	14	94	5	55	41	0	22	35	1.54
40469734--40469909	84	2.1	84	93	0	298	28	7	15	48	1.72
40470631--40470721	45	2.0	45	100	0	182	36	17	6	39	1.76
40474096--40474227	63	2.1	65	97	2	250	20	18	6	54	1.65
40486732--40486817	44	2.0	44	82	8	106	31	11	20	36	1.89
40489208--40489238	5	6.0	5	92	7	53	38	0	0	61	0.96
40490835--40490984	48	3.1	48	100	0	300	42	0	18	39	1.51
40495657--40495695	20	2.0	20	89	0	60	30	5	5	58	1.41
40503184--40503241	25	2.3	25	85	11	75	31	18	27	22	1.97
40509064--40509248	40	4.6	40	79	6	212	22	28	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40511181--40511220	20	2.0	20	95	0	71	50	5	17	27	1.67
40517454--40517498	3	15.0	3	95	0	81	0	31	0	68	0.89
40519144--40519272	46	2.8	46	89	0	186	20	22	28	28	1.98
40525287--40525326	21	2.0	21	90	5	64	12	40	27	20	1.88
40542409--40542731	48	6.7	48	89	3	438	23	17	31	27	1.96
40547142--40547276	39	3.4	39	74	11	116	28	27	20	23	1.99
40548836--40548873	11	3.3	12	89	10	62	57	0	0	42	0.98
40554291--40554425	39	3.4	39	74	11	116	28	27	20	23	1.99
40564591--40564629	16	2.5	15	84	12	51	38	0	0	61	0.96
40564601--40564646	23	2.0	22	87	4	65	45	0	2	52	1.13
40567505--40567584	42	1.9	42	86	0	115	50	6	2	41	1.41
40567745--40567790	18	2.5	19	82	10	60	60	2	2	34	1.21
40567779--40567822	20	2.2	20	80	15	56	61	0	0	38	0.96
40567779--40567818	19	2.2	20	82	13	50	65	0	0	35	0.93
40574664--40574709	24	1.9	24	86	0	65	50	2	4	43	1.34
40575553--40575678	60	2.1	59	83	1	153	41	12	7	38	1.73
40583461--40583558	27	3.5	28	90	2	135	26	13	28	31	1.94
40583489--40583571	27	3.0	27	87	5	96	30	12	25	32	1.92
40583461--40583572	28	4.0	27	83	6	98	28	12	25	33	1.92
40588513--40588679	46	3.6	44	77	12	122	26	17	29	26	1.97
40595210--40595255	20	2.5	17	78	18	56	32	19	8	39	1.82
40595215--40595259	20	2.2	20	100	0	90	35	17	11	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40597819--40597888	32	2.2	32	97	0	131	45	24	5	24	1.74
40598321--40598474	42	3.6	42	82	8	188	31	24	14	29	1.94
40611699--40611730	13	2.3	15	89	10	50	68	0	9	21	1.17
40613055--40613100	20	2.5	17	78	18	56	32	19	8	39	1.82
40613060--40613104	20	2.2	20	100	0	90	35	17	11	35	1.86
40615664--40615733	32	2.2	32	97	0	131	45	24	5	24	1.74
40616224--40616319	42	2.3	42	87	7	142	29	23	15	31	1.96
40626161--40626280	58	2.1	58	100	0	240	42	17	13	26	1.86
40629932--40629963	13	2.3	15	89	10	50	68	0	9	21	1.17
40631960--40631985	13	2.0	13	100	0	52	15	15	0	69	1.20
40635544--40635568	13	1.9	13	100	0	50	24	32	32	12	1.91
40636409--40636435	11	2.5	11	100	0	54	11	14	7	66	1.43
40638066--40638093	6	4.7	6	100	0	56	14	0	0	85	0.59
40639656--40639878	119	1.9	120	82	6	283	25	27	21	25	2.00
40639654--40639878	40	5.7	40	83	6	269	25	27	21	24	1.99
40647864--40648035	40	4.3	39	86	5	229	26	27	20	25	1.99
40647864--40648086	80	2.8	78	80	5	214	26	27	21	25	1.99
40647866--40648081	119	1.8	120	81	7	269	26	26	21	25	1.99
40651779--40651828	20	2.5	20	100	0	100	12	28	14	46	1.79
40656892--40657046	48	3.2	46	75	7	134	29	23	18	29	1.98
40656908--40657047	48	2.9	47	82	6	174	28	24	17	29	1.97
40660663--40660766	29	3.7	29	84	2	131	25	14	29	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40665540--40665635	28	3.4	28	74	16	99	29	32	14	23	1.94
40665528--40665657	56	2.3	58	85	5	183	30	28	13	28	1.94
40665562--40665661	28	3.6	28	70	5	85	28	28	14	30	1.95
40676793--40676966	46	3.8	45	76	15	167	30	28	20	20	1.98
40676802--40676970	93	1.8	93	89	0	266	29	29	20	20	1.98
40679361--40679395	17	2.1	17	100	0	70	28	40	25	5	1.78
40707525--40707570	16	2.9	16	84	15	69	15	4	0	80	0.86
40707526--40707609	5	15.8	5	73	22	57	17	4	1	76	1.03
40707526--40707578	22	2.4	22	87	6	72	15	3	1	79	0.96
40707521--40707589	6	11.8	6	80	9	72	15	4	1	78	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352