genome.fa.s11.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  210  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69197977--69198130	58	2.7	58	77	0	182	21	25	13	38	1.90
69216673--69216747	30	2.5	28	72	19	71	16	2	73	8	1.18
69216941--69216998	28	2.1	28	83	6	73	20	0	75	3	0.94
69216940--69217003	18	3.2	18	73	23	56	20	0	76	3	0.92
69216937--69217003	10	6.4	10	76	13	55	19	0	77	2	0.89
69217101--69217144	8	5.5	8	81	8	54	15	0	84	0	0.63
69217101--69217143	15	2.9	15	82	0	59	16	0	83	0	0.64
69217101--69217144	23	1.9	23	90	0	70	15	0	84	0	0.63
69217426--69217474	17	2.9	16	80	14	55	6	2	77	14	1.05
69228723--69228869	40	3.7	40	83	5	120	25	27	21	25	2.00
69228769--69228949	80	2.3	80	83	9	219	27	27	20	23	1.99
69228766--69228949	40	4.6	40	81	7	196	28	27	20	23	1.99
69232086--69232204	40	3.0	40	82	6	159	25	26	23	25	2.00
69241697--69241872	46	3.8	46	80	1	217	27	28	21	22	1.99
69241704--69241875	93	1.8	93	94	0	308	26	29	21	22	1.99
69243755--69243834	15	5.4	15	76	7	74	57	12	18	11	1.64
69243766--69243843	15	5.2	15	72	9	61	55	14	17	12	1.70
69246791--69246962	93	1.8	93	93	0	299	26	28	21	23	1.99
69246784--69246959	46	3.8	46	79	12	198	27	28	21	22	1.99
69246792--69246978	46	4.0	46	76	18	147	27	27	20	23	1.99
69252380--69252466	27	3.3	26	77	9	77	21	22	19	35	1.96
69272470--69272584	27	4.3	26	88	7	151	17	24	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69280505--69280917	47	8.7	47	95	1	711	33	8	29	29	1.87
69280526--69280917	190	2.1	188	95	0	703	33	8	28	29	1.87
69282330--69282601	40	6.8	40	92	0	436	24	21	27	26	1.99
69286392--69286436	19	2.2	22	80	15	60	33	0	28	37	1.58
69286522--69286600	25	3.3	25	61	10	65	32	5	29	32	1.79
69286475--69286881	47	8.7	47	91	6	625	32	8	29	29	1.86
69290926--69291040	37	3.1	38	83	9	155	27	20	24	27	1.99
69295549--69295732	40	4.7	39	82	8	212	25	28	22	24	1.99
69295548--69295730	78	2.3	80	80	7	212	24	28	21	25	1.99
69302066--69302193	46	2.8	46	95	0	220	20	21	29	28	1.98
69303886--69303985	27	3.7	27	77	5	85	29	16	17	38	1.91
69303910--69303988	27	2.9	27	80	0	95	29	18	17	34	1.95
69307552--69307646	34	2.8	34	86	0	109	29	21	22	27	1.99
69311259--69311443	27	6.9	27	83	0	219	24	16	20	38	1.92
69313626--69313814	40	4.7	40	90	1	272	25	23	28	22	1.99
69317718--69317749	16	1.9	17	93	6	57	50	9	15	25	1.74
69324665--69324747	22	3.7	22	82	8	96	34	19	22	22	1.96
69331346--69331509	42	3.9	43	78	12	162	33	24	14	28	1.94
69335397--69335504	56	1.9	56	88	3	164	29	20	15	34	1.94
69340603--69340832	50	4.7	48	75	8	158	22	29	20	27	1.98
69340606--69340896	100	2.9	99	83	5	320	23	28	19	28	1.98
69340654--69340896	50	4.9	50	86	3	319	22	28	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69351137--69351180	20	2.2	20	83	0	52	25	34	29	11	1.91
69355939--69356090	42	3.6	42	82	7	182	29	17	24	28	1.97
69359154--69359272	46	2.6	46	84	11	147	27	17	30	24	1.97
69364955--69365049	18	5.7	17	70	20	67	10	17	1	70	1.21
69364974--69365004	12	2.5	13	89	10	55	12	16	0	70	1.16
69368830--69368893	29	2.2	29	88	0	101	29	12	29	28	1.93
69372869--69372992	24	5.2	24	94	0	205	29	20	19	31	1.97
69373042--69373108	20	3.3	20	91	0	107	31	20	13	34	1.92
69373042--69373098	11	5.5	11	72	16	59	31	19	14	35	1.91
69373156--69373215	24	2.5	24	100	0	120	28	15	20	36	1.92
69380921--69381099	24	7.4	24	96	1	322	27	21	20	30	1.98
69380921--69381099	73	2.5	73	96	1	324	27	21	20	30	1.98
69381150--69381208	20	3.0	20	97	0	109	30	22	11	35	1.90
69381145--69381215	20	3.6	19	87	7	99	32	22	11	33	1.90
69392742--69392797	26	2.1	26	83	9	69	44	17	0	37	1.49
69392746--69392809	25	2.5	26	78	14	71	46	17	0	35	1.48
69395170--69395314	23	6.0	23	80	13	157	26	22	22	28	1.99
69395168--69395300	51	2.7	48	81	13	164	28	21	21	28	1.99
69395508--69395571	31	2.1	31	84	0	83	35	17	21	25	1.95
69401968--69402015	25	1.9	25	86	0	69	33	25	16	25	1.96
69402063--69402118	11	5.5	11	71	16	57	35	12	19	32	1.89
69402052--69402118	20	3.3	20	93	0	116	34	11	20	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69402169--69402308	23	6.0	23	86	5	192	27	22	22	27	1.99
69402502--69402565	31	2.1	31	88	5	94	35	15	21	26	1.94
69403825--69403878	27	2.0	28	88	3	83	37	11	16	35	1.84
69416997--69417132	23	5.8	23	70	18	68	29	22	15	33	1.94
69417070--69417134	24	2.6	24	85	4	85	29	23	16	30	1.96
69418014--69418072	30	2.0	30	93	0	100	18	16	35	28	1.93
69425835--69425890	28	2.0	29	92	3	96	26	33	16	23	1.95
69433559--69433613	28	1.9	29	92	3	94	27	30	16	25	1.96
69436385--69436432	12	3.9	13	74	20	50	62	2	0	35	1.07
69436831--69436877	18	2.6	18	82	0	58	55	2	6	36	1.37
69438656--69439217	73	7.5	72	80	10	615	32	18	17	31	1.94
69438560--69439476	309	2.9	308	89	5	1269	34	19	16	29	1.94
69438929--69439486	145	3.6	146	73	16	451	34	19	17	28	1.95
69439145--69439395	88	2.8	87	83	4	281	34	18	17	29	1.94
69439618--69439884	76	3.5	75	88	4	385	31	20	15	31	1.94
69439902--69440075	69	2.5	70	83	5	194	35	22	14	28	1.93
69448351--69448390	16	2.5	17	84	12	57	40	10	22	27	1.86
69452285--69452332	12	3.9	13	74	20	50	62	2	0	35	1.07
69452732--69452787	21	2.6	21	82	5	67	57	3	5	33	1.39
69459557--69459711	43	3.6	43	84	6	190	29	14	23	32	1.95
69464670--69464885	50	4.3	50	81	3	256	30	11	18	39	1.86
69471647--69471689	22	2.0	22	85	0	59	58	6	13	20	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69472495--69472641	50	2.9	49	81	4	170	33	10	16	39	1.83
69476180--69476315	29	4.8	28	82	6	134	25	33	15	25	1.95
69476180--69476327	58	2.6	57	81	10	151	27	32	14	26	1.94
69483050--69483195	29	5.1	28	76	9	109	28	29	13	28	1.94
69483044--69483175	29	4.6	29	78	3	126	26	30	15	28	1.96
69483255--69483288	18	1.9	18	88	5	52	20	38	23	17	1.93
69491476--69491568	48	1.9	48	97	0	177	22	11	18	47	1.81
69494665--69494817	23	6.3	24	82	9	127	25	24	20	30	1.99
69494950--69495013	19	3.3	19	78	4	74	29	4	23	42	1.74
69498024--69498064	21	2.0	21	85	0	55	53	4	9	31	1.55
69498059--69498135	26	3.0	26	94	3	129	63	0	16	19	1.31
69498129--69498197	36	1.9	36	96	0	129	49	2	7	40	1.45
69500241--69500296	29	1.9	29	92	0	94	50	5	16	28	1.67
69501217--69501291	27	2.7	28	85	8	100	49	17	16	17	1.80
69504080--69504157	25	3.2	25	64	29	69	30	10	29	29	1.90
69504105--69504226	22	5.3	22	63	24	63	32	12	28	26	1.92
69503985--69504316	47	7.1	47	92	0	486	34	10	28	26	1.89
69504290--69504472	46	4.0	46	93	0	285	34	8	31	25	1.86
69505579--69505635	22	2.6	21	72	2	60	66	5	3	24	1.28
69513321--69513492	46	3.7	46	76	13	190	27	27	23	21	1.99
69513326--69513496	93	1.8	93	92	0	288	26	28	23	21	1.99
69513919--69513978	30	2.0	30	90	0	93	30	25	8	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69516042--69516225	40	4.6	40	81	6	187	23	21	27	27	1.99
69516122--69516272	40	3.8	39	80	6	117	24	22	28	24	1.99
69518918--69518972	27	2.0	27	100	0	110	27	29	29	14	1.95
69534284--69534412	46	2.8	46	93	0	213	30	27	20	20	1.98
69534835--69534894	30	2.0	30	90	0	93	30	25	8	36	1.85
69538198--69538262	20	3.3	20	69	26	66	6	4	27	61	1.40
69538207--69538269	16	3.5	16	70	25	54	4	4	23	66	1.30
69538194--69538271	39	2.0	39	100	0	156	7	5	25	61	1.44
69538207--69538272	17	3.6	17	70	26	55	4	6	22	66	1.32
69538213--69538275	20	3.2	20	65	13	58	4	7	22	65	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352