genome.fa.s11.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  124  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39755229--39755487	40	6.5	40	87	2	299	23	22	28	25	1.99
39763898--39763935	20	1.9	20	100	0	76	26	10	26	36	1.89
39763918--39764015	43	2.3	42	80	7	99	26	13	26	33	1.93
39765143--39765179	12	3.1	12	96	0	65	0	27	62	10	1.28
39772805--39772970	44	3.7	44	77	12	185	22	20	27	29	1.98
39772803--39772969	91	1.8	90	91	5	273	21	20	28	29	1.98
39775152--39775337	41	4.6	41	89	3	252	25	24	25	24	2.00
39775154--39775307	81	1.9	82	89	4	240	24	24	25	25	2.00
39779051--39779131	23	3.5	23	89	0	126	20	20	17	40	1.91
39779259--39779338	33	2.7	28	73	17	79	25	25	26	23	2.00
39779277--39779362	33	2.6	33	88	0	118	25	19	25	29	1.99
39781288--39781349	25	2.5	25	81	5	72	25	30	12	30	1.93
39789778--39789965	100	1.9	100	92	2	315	26	19	25	28	1.98
39789776--39789970	49	3.9	49	80	4	230	27	18	26	28	1.98
39792619--39792949	59	5.6	59	88	2	513	46	5	2	45	1.40
39792619--39792941	118	2.7	118	93	1	569	46	5	2	45	1.40
39796548--39796697	43	3.5	42	75	1	129	36	20	16	27	1.94
39796581--39796739	43	3.7	43	74	3	126	37	20	15	26	1.92
39800214--39800245	16	2.0	16	93	0	55	46	6	6	40	1.54
39806197--39806440	48	5.1	48	75	11	232	26	19	26	27	1.99
39809011--39809045	17	2.1	17	88	0	52	48	5	20	25	1.71
39812512--39812541	14	2.1	14	93	0	51	20	16	30	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39820955--39821033	37	2.1	37	88	4	115	25	30	18	25	1.98
39821152--39822220	47	22.7	47	94	0	1798	29	29	8	32	1.87
39825996--39826073	29	2.7	29	84	7	97	28	32	15	24	1.95
39826055--39826157	43	2.4	43	96	0	188	26	35	15	22	1.94
39828005--39828081	35	2.1	37	90	4	122	24	31	19	24	1.98
39828202--39828618	47	8.7	47	93	1	690	29	29	8	31	1.87
39828479--39828555	25	3.2	25	63	10	70	33	28	5	32	1.79
39831143--39831180	20	1.9	19	85	15	51	39	10	23	26	1.87
39836061--39836155	40	2.4	40	85	0	127	34	27	17	20	1.95
39836938--39837034	43	2.3	43	92	0	158	32	24	5	37	1.78
39836938--39837004	21	3.1	21	64	19	57	32	25	4	37	1.76
39839813--39839953	49	2.8	51	86	2	196	24	19	27	27	1.99
39839818--39839953	51	2.7	49	86	2	182	25	19	26	27	1.99
39841597--39841724	66	1.9	65	84	6	168	32	17	30	20	1.95
39842752--39842783	17	1.9	17	93	6	57	50	0	12	37	1.41
39849461--39849498	20	1.9	20	84	10	51	42	13	23	21	1.88
39851332--39851604	46	6.0	46	91	1	406	39	14	23	22	1.91
39855719--39855790	36	2.0	36	94	2	128	59	11	5	23	1.52
39855719--39855774	19	3.1	19	63	31	50	57	10	7	25	1.58
39856561--39856585	12	2.1	12	100	0	50	60	8	8	24	1.52
39856754--39856803	18	2.8	18	75	3	57	54	8	0	38	1.30
39861457--39861554	27	3.5	28	90	2	135	26	13	28	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39861485--39861567	27	3.0	27	87	5	96	30	12	25	32	1.92
39861457--39861568	28	4.0	27	83	6	98	28	12	25	33	1.92
39869318--39869415	27	3.5	28	87	2	126	27	12	28	31	1.93
39869346--39869428	27	3.0	27	85	5	87	31	10	25	32	1.90
39869318--39869429	28	4.0	27	81	6	89	29	11	25	33	1.91
39875730--39875759	15	2.0	15	100	0	60	46	6	26	20	1.75
39875914--39875952	18	2.3	17	86	8	53	38	5	12	43	1.65
39876694--39876723	15	2.0	15	93	0	51	23	6	46	23	1.75
39880078--39880108	15	2.1	15	100	0	62	38	6	32	22	1.80
39880265--39880303	18	2.3	17	86	8	53	38	5	12	43	1.65
39885121--39885156	13	2.7	14	91	8	58	0	8	0	91	0.41
39885121--39885156	7	5.4	7	90	9	58	0	8	0	91	0.41
39885121--39885163	20	2.2	20	86	0	59	4	6	2	86	0.79
39886747--39886796	9	5.7	9	79	13	50	60	2	2	36	1.20
39886747--39886800	25	2.2	25	83	6	65	59	1	1	37	1.19
39887357--39887381	13	1.9	13	100	0	50	68	0	0	32	0.90
39891312--39891479	40	4.2	40	83	4	106	25	27	23	23	2.00
39891335--39891479	40	3.6	40	85	4	193	23	26	24	25	2.00
39904585--39904917	24	13.9	24	73	10	236	25	11	26	36	1.90
39904586--39904888	96	3.2	96	95	0	525	26	11	26	36	1.90
39904586--39904889	48	6.3	48	79	7	339	25	11	26	36	1.90
39924576--39924758	40	4.6	40	77	10	187	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39929205--39929359	40	3.8	40	87	4	213	23	23	27	25	2.00
39941719--39942084	48	7.7	49	72	13	248	23	27	19	29	1.98
39941915--39942086	47	3.7	46	81	12	174	22	26	20	30	1.99
39941915--39942086	94	1.8	94	89	2	274	22	26	20	30	1.99
39945194--39945378	40	4.6	41	85	8	254	23	22	29	24	1.99
39945198--39945352	83	1.9	83	95	0	283	22	22	30	23	1.99
39945198--39945378	83	2.2	82	90	3	251	23	23	29	23	1.99
39958748--39958931	40	4.6	40	81	6	214	24	21	27	26	1.99
39963702--39963742	18	2.3	18	95	0	73	29	29	12	29	1.93
39975752--39975777	13	2.0	13	100	0	52	23	7	30	38	1.83
39991313--39991393	40	2.0	40	95	0	144	18	11	30	39	1.86
39999093--39999180	27	3.3	26	84	4	113	38	22	20	18	1.93
40003761--40003933	46	3.7	46	80	13	219	21	21	28	28	1.98
40003758--40003928	93	1.8	93	96	0	315	21	21	29	28	1.98
40011322--40011493	46	3.8	45	80	11	215	21	21	27	29	1.99
40011319--40011488	92	1.8	92	96	0	313	21	21	28	28	1.99
40014923--40015041	43	2.8	42	80	7	141	29	14	28	27	1.95
40017444--40017540	40	2.4	40	91	3	151	29	26	16	26	1.97
40021715--40021780	33	2.0	33	100	0	132	54	21	3	21	1.58
40023050--40023092	16	2.8	15	75	6	50	39	18	0	41	1.51
40030521--40030692	27	6.4	27	88	0	236	40	19	8	31	1.81
40030521--40030719	81	2.5	81	85	3	222	40	19	8	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40030566--40030773	81	2.6	79	81	7	222	41	21	7	29	1.80
40030742--40030925	27	6.8	27	83	0	197	35	22	4	36	1.74
40030521--40030935	27	15.4	27	80	4	194	39	20	6	33	1.79
40030920--40031006	27	3.2	27	83	0	111	40	18	17	24	1.91
40031458--40031522	22	3.0	22	80	8	78	20	23	23	33	1.97
40031876--40031933	19	3.4	19	65	30	58	18	17	17	46	1.84
40031865--40031984	6	19.3	6	72	19	77	20	17	13	48	1.81
40031865--40032000	31	4.4	31	83	3	150	20	16	13	49	1.79
40033911--40033990	27	3.0	27	85	7	117	38	20	8	32	1.83
40033995--40034079	27	3.1	27	89	0	125	38	22	9	29	1.85
40034093--40034314	27	8.3	27	85	1	275	29	21	8	40	1.82
40034093--40034314	107	2.1	108	86	0	311	29	21	8	40	1.82
40034323--40034546	27	8.3	26	82	8	218	36	20	20	22	1.95
40034323--40034546	81	2.8	81	85	6	242	36	20	20	22	1.95
40034993--40035053	22	2.8	22	85	5	70	22	21	22	32	1.98
40035212--40035284	27	2.7	27	85	2	85	20	24	17	36	1.94
40035430--40035493	31	2.1	31	90	0	101	17	12	17	53	1.73
40037484--40037643	27	6.0	27	85	1	214	40	19	8	31	1.82
40037711--40037867	27	5.8	27	87	3	190	29	21	7	40	1.81
40037686--40037877	54	3.6	54	80	2	188	32	22	7	37	1.82
40037686--40037877	81	2.4	81	80	3	208	32	22	7	37	1.82
40037870--40038110	27	9.0	27	86	2	306	35	19	21	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40038540--40038600	21	2.8	22	82	5	70	19	22	21	36	1.95
40038537--40038600	22	3.0	22	81	4	76	18	23	21	35	1.95
40038759--40038831	27	2.7	27	85	2	85	20	24	19	35	1.95
40038992--40039079	6	14.3	6	76	13	81	19	19	14	46	1.84
40038980--40039079	31	3.2	31	92	0	155	19	18	16	47	1.84
40040952--40041130	27	6.6	26	86	3	214	40	19	8	31	1.81
40040943--40041213	54	5.0	54	80	5	228	39	20	8	31	1.82
40040952--40041157	81	2.5	81	83	5	238	40	19	8	31	1.81
40040974--40041211	27	8.8	27	82	5	178	40	20	7	31	1.81
40041004--40041213	81	2.6	79	79	8	208	40	21	7	30	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352