Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  342  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109484312--109485466
285
4.0
286
86
6
1585
27
6
7
58
1.50
109485935--109485990
3
19.7
3
78
7
55
0
28
0
71
0.86
109492053--109492121
35
2.0
35
97
0
129
17
49
11
21
1.78
109492956--109492996
3
13.3
3
89
5
64
34
0
0
65
0.93
109493181--109493235
22
2.5
23
77
13
62
43
0
3
52
1.18
109494587--109494652
34
1.9
34
90
6
107
46
13
6
33
1.68
109494583--109494660
14
5.1
15
73
19
63
44
14
6
34
1.70
109495453--109495490
18
2.1
19
90
5
60
26
0
2
71
1.00
109495818--109495958
51
2.8
51
79
4
142
40
9
16
34
1.80
109502448--109502485
15
2.3
17
86
13
53
47
0
10
42
1.38
109516038--109516068
7
4.4
7
91
0
53
87
0
12
0
0.55
109516039--109516071
17
2.0
17
88
5
50
87
0
12
0
0.53
109531469--109531510
16
2.7
16
89
10
61
83
0
16
0
0.65
109531469--109531510
7
5.9
7
81
13
50
83
0
16
0
0.65
109562151--109562185
6
5.8
6
86
0
52
31
0
17
51
1.45
109563433--109563472
20
1.9
20
85
10
53
52
2
7
37
1.43
109565818--109565979
42
3.9
42
82
3
175
45
17
20
17
1.86
109565853--109565921
21
3.3
21
67
15
61
49
18
17
14
1.80
109570466--109570503
19
2.0
19
89
0
58
36
10
18
34
1.85
109572187--109572262
19
4.0
19
78
13
84
38
0
3
57
1.17
109572197--109572273
19
4.1
18
79
12
84
37
0
2
59
1.11
109572269--109572322
20
2.7
20
88
11
76
31
0
5
62
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109572203--109572323
65
1.9
63
81
8
145
36
0
4
59
1.17
109573359--109573438
21
3.9
21
77
3
83
17
25
17
40
1.91
109573907--109573947
20
2.0
22
85
9
59
24
4
31
39
1.76
109574612--109574650
19
2.1
19
85
0
51
20
25
30
23
1.98
109576156--109576191
18
1.9
18
88
5
54
36
2
2
58
1.27
109576196--109576245
20
2.5
20
81
12
59
40
0
8
52
1.31
109583686--109583733
25
1.9
25
83
8
62
50
8
6
35
1.58
109583837--109583904
27
2.5
26
75
15
68
55
4
8
30
1.50
109583907--109583969
31
2.0
31
100
0
126
39
6
19
34
1.77
109584293--109584343
3
17.0
3
76
15
52
64
1
0
33
1.05
109584293--109584343
15
3.4
15
89
5
68
64
1
0
33
1.05
109584803--109584830
6
4.7
6
100
0
56
32
0
67
0
0.91
109585430--109585461
16
2.0
16
93
0
55
12
6
40
40
1.68
109597937--109597996
29
2.0
30
96
3
113
65
0
5
30
1.14
109606066--109606149
26
3.2
26
93
3
143
39
23
3
33
1.72
109616061--109616118
31
1.9
31
85
3
82
32
10
5
51
1.58
109620188--109620217
15
2.1
15
93
6
53
43
13
0
43
1.43
109623015--109623087
35
2.1
35
100
0
146
31
6
21
39
1.80
109630657--109631190
81
6.6
81
81
3
590
31
22
17
28
1.97
109630657--109631198
162
3.3
162
86
1
755
30
22
18
28
1.97
109630657--109631190
243
2.2
243
82
2
651
31
22
17
28
1.97
109632503--109632554
27
1.9
27
100
0
104
40
7
19
32
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109635250--109635290
21
2.0
21
90
0
64
19
29
21
29
1.98
109637468--109637501
15
2.3
15
89
0
50
17
14
8
58
1.61
109644212--109644658
81
5.5
81
88
2
641
29
21
21
28
1.98
109644212--109644898
162
4.3
163
82
7
810
29
21
20
28
1.98
109644509--109644804
144
2.1
144
84
1
396
31
22
20
26
1.98
109644680--109644888
81
2.6
81
87
1
294
31
21
20
27
1.97
109644454--109644880
225
1.9
225
87
1
633
30
21
21
27
1.98
109647679--109647724
11
4.0
11
81
10
56
36
0
4
58
1.18
109649580--109649836
132
1.9
133
86
3
367
29
19
16
33
1.94
109649617--109649951
132
2.5
132
81
1
359
29
20
16
33
1.94
109662206--109662253
12
3.8
12
76
10
51
27
6
4
62
1.38
109662405--109662446
22
1.9
22
90
0
66
23
7
2
66
1.28
109662586--109662642
28
2.0
30
82
6
73
28
5
3
63
1.33
109664970--109665011
22
1.9
22
90
0
66
66
2
7
23
1.28
109665058--109665124
35
1.9
34
81
3
80
58
4
11
25
1.52
109665167--109665214
12
3.8
12
76
10
51
62
4
6
27
1.38
109665272--109665370
3
32.3
3
71
11
58
63
3
5
28
1.30
109673790--109673852
31
2.1
31
96
3
119
25
34
22
17
1.95
109682072--109682102
16
1.9
16
93
0
53
16
12
6
64
1.47
109682003--109682428
89
4.9
88
81
8
502
27
16
20
35
1.94
109682159--109682193
14
2.5
14
95
0
61
17
17
5
60
1.55
109682174--109682323
76
2.0
75
92
3
248
30
16
22
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109682088--109682732
165
3.9
159
81
10
683
27
17
20
33
1.95
109682414--109682732
88
3.6
88
83
9
339
26
18
19
34
1.95
109682414--109682819
89
4.6
86
78
9
363
27
17
19
36
1.94
109687161--109687438
75
3.7
75
86
2
380
32
21
20
25
1.97
109687250--109687373
35
3.4
35
73
14
124
36
22
16
24
1.94
109687165--109687438
150
1.8
149
88
0
422
33
21
20
25
1.97
109688300--109688332
11
3.1
11
91
8
59
27
15
0
57
1.38
109691317--109691349
11
3.1
11
91
8
59
27
15
0
57
1.38
109694260--109694320
28
2.2
28
82
2
79
34
21
22
21
1.97
109694759--109694815
22
2.6
22
82
0
69
33
21
24
21
1.97
109695175--109695236
27
2.3
27
94
0
106
30
16
14
38
1.88
109695189--109695380
27
7.1
27
81
8
187
32
7
18
41
1.79
109695189--109695380
54
3.5
55
78
8
207
32
7
18
41
1.79
109695218--109695374
81
1.9
82
87
6
230
33
7
16
42
1.75
109697025--109697110
44
2.0
44
95
0
154
20
37
15
26
1.92
109697026--109697096
22
3.2
22
65
21
58
19
38
16
25
1.93
109705601--109705993
169
2.3
170
82
10
452
29
18
19
32
1.96
109720563--109720593
16
1.9
16
93
0
53
16
12
6
64
1.47
109720494--109721323
89
9.7
87
74
12
621
27
17
19
34
1.95
109720650--109720684
14
2.5
14
100
0
70
17
20
5
57
1.60
109720665--109721074
77
5.1
75
72
18
260
28
18
20
32
1.96
109720579--109721224
166
3.9
161
83
9
709
28
18
19
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109720851--109721000
73
2.0
73
85
5
203
28
18
21
32
1.97
109720906--109721311
88
4.6
88
80
9
391
26
17
19
36
1.94
109720906--109721224
176
1.8
176
86
2
462
26
18
19
34
1.95
109730785--109730827
18
2.5
17
84
3
59
62
9
0
27
1.25
109731661--109731774
57
2.0
57
98
0
219
42
5
21
29
1.75
109733197--109733269
2
38.5
2
72
20
50
39
2
1
56
1.22
109733136--109733270
25
5.5
25
70
14
68
37
3
2
55
1.33
109733285--109733343
25
2.5
24
78
10
68
33
8
6
50
1.59
109733301--109733349
25
2.0
25
91
0
80
34
8
6
51
1.57
109733505--109733552
16
3.1
15
90
6
69
31
2
2
64
1.16
109733505--109733556
8
6.5
8
82
8
61
30
1
1
65
1.14
109734261--109734313
25
2.1
25
82
6
63
35
5
3
54
1.42
109735681--109735728
19
2.5
19
86
6
62
18
2
2
77
0.97
109740091--109740332
108
2.2
108
83
0
297
26
22
22
28
1.99
109740151--109742308
99
21.7
99
90
1
3146
22
20
28
29
1.98
109749728--109749776
19
2.5
19
86
3
62
28
0
2
69
1.00
109754321--109754407
43
2.0
44
95
2
158
35
12
22
28
1.91
109759962--109760013
17
3.1
17
82
15
63
38
1
1
57
1.21
109766380--109766413
2
17.0
2
93
0
59
52
0
0
47
1.00
109769618--109769668
25
2.0
25
100
0
102
23
15
11
49
1.78
109773423--109773537
42
2.7
41
86
6
151
29
23
13
33
1.93
109773655--109773741
31
2.8
31
89
0
129
26
27
18
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109773737--109773836
43
2.3
45
89
6
152
25
22
16
37
1.93
109779493--109779528
14
2.8
12
84
15
54
25
0
0
75
0.81
109784544--109784622
38
2.2
36
80
11
90
22
16
21
39
1.92
109784897--109784953
30
1.9
30
100
0
114
43
3
3
49
1.36
109788354--109788438
42
2.0
42
95
0
152
37
2
14
45
1.57
109788814--109788862
10
4.7
11
82
7
50
38
2
0
59
1.09
109788815--109788841
2
13.5
2
100
0
54
48
0
0
51
1.00
109789140--109789173
17
1.9
18
88
5
52
50
11
0
38
1.39
109793834--109793872
3
12.7
3
94
5
69
69
0
0
30
0.89
109793830--109793879
16
3.2
16
86
8
59
68
2
2
28
1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352