genome.fa.s11.2.7.7.80.10.50.1000.345.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  345  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110420410--110420434	3	8.3	3	100	0	50	32	0	0	68	0.90
110423323--110423638	43	7.3	43	97	0	587	30	20	28	20	1.98
110423692--110423757	30	2.2	30	83	8	80	56	19	6	18	1.62
110423989--110424053	21	3.1	21	87	10	98	0	47	21	30	1.51
110424032--110424062	15	2.0	16	93	6	55	0	51	16	32	1.44
110424466--110424494	14	2.1	14	93	6	51	58	6	0	34	1.25
110424661--110424699	17	2.4	17	86	4	53	48	0	10	41	1.37
110429700--110429871	9	18.6	9	69	12	71	38	1	12	47	1.51
110429729--110429788	17	3.4	17	79	6	75	40	1	8	50	1.43
110429700--110429846	69	2.2	67	87	8	205	39	1	11	47	1.48
110429805--110429837	17	1.9	17	93	0	57	36	3	9	51	1.49
110429729--110429902	87	2.0	86	87	1	249	39	2	10	48	1.50
110429976--110430031	15	3.8	15	76	21	64	51	0	1	46	1.11
110430357--110431039	358	1.9	359	97	0	1287	39	10	14	35	1.81
110431263--110431291	15	1.9	15	100	0	58	48	20	6	24	1.74
110434305--110434340	17	2.2	17	95	5	65	72	5	0	22	1.05
110434453--110434501	16	2.9	16	79	11	53	46	6	8	38	1.58
110434616--110434670	8	7.0	8	74	10	51	34	45	0	20	1.51
110434616--110434678	15	4.1	15	78	8	72	34	44	0	20	1.52
110434646--110434813	73	2.3	72	80	7	194	38	36	1	23	1.65
110435027--110435080	7	7.4	7	85	8	63	48	29	0	22	1.51
110435307--110435352	14	3.3	14	79	11	58	28	2	19	50	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110435780--110435900	42	2.9	42	92	4	194	27	24	18	29	1.98
110435771--110435912	42	3.4	42	88	4	182	25	21	19	33	1.97
110435869--110436232	152	2.4	151	83	3	444	28	23	18	29	1.98
110438088--110438113	9	2.9	9	100	0	52	92	0	7	0	0.39
110438087--110438117	10	3.2	10	90	9	55	90	0	9	0	0.46
110439883--110440014	66	2.0	66	95	0	237	32	19	11	36	1.88
110440210--110441426	68	17.9	68	90	1	1653	25	23	22	28	1.99
110441480--110443029	44	34.8	44	68	12	740	31	17	24	26	1.97
110441538--110442336	132	6.0	132	95	0	1438	31	18	24	26	1.97
110442280--110442395	58	2.0	58	100	0	232	32	18	22	25	1.97
110442149--110442526	191	2.0	190	93	0	639	32	17	23	26	1.97
110442340--110443025	133	5.2	133	92	0	1162	31	17	23	27	1.97
110441886--110442793	456	2.0	454	95	0	1627	31	17	23	26	1.97
110442340--110443029	265	2.6	265	94	1	1197	31	17	23	27	1.97
110443028--110443125	44	2.2	45	83	1	117	32	13	27	26	1.93
110448195--110448278	26	3.2	26	96	0	150	36	25	4	33	1.77
110453341--110453392	16	3.4	16	75	20	65	59	3	0	36	1.16
110453334--110453394	30	2.0	30	96	0	113	57	3	0	39	1.15
110459408--110459471	21	3.0	21	97	0	119	40	26	0	32	1.56
110461014--110461148	30	4.7	29	78	8	134	33	19	12	34	1.89
110461021--110461110	28	3.1	27	72	17	74	37	16	10	35	1.82
110461014--110461154	58	2.5	57	85	2	185	34	18	12	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110463617--110463655	18	2.2	17	86	13	53	33	0	20	46	1.51
110463774--110463802	8	3.6	8	100	0	58	24	13	27	34	1.93
110463889--110463961	23	3.2	23	88	0	119	24	20	24	30	1.99
110466418--110466485	27	2.5	28	87	2	86	17	4	44	33	1.69
110471497--110471530	18	1.9	18	88	5	52	55	2	11	29	1.50
110472248--110472297	10	5.0	10	85	9	75	68	2	8	22	1.26
110472248--110472307	20	3.0	19	83	9	75	66	3	8	21	1.33
110475877--110475941	33	2.0	33	84	0	85	29	30	10	29	1.91
110485424--110485494	17	4.2	16	75	8	61	39	2	11	46	1.54
110485431--110485496	33	2.0	33	85	5	89	39	3	12	45	1.57
110488741--110488768	3	9.3	3	100	0	56	32	0	0	67	0.91
110491114--110491154	18	2.4	17	83	4	55	31	0	4	63	1.15
110491122--110491160	18	2.2	18	90	0	60	33	0	5	61	1.18
110491116--110491162	16	2.8	18	84	9	64	34	0	4	61	1.15
110492191--110492229	13	3.0	13	92	0	60	76	0	23	0	0.78
110508755--110508810	27	2.1	27	82	0	67	21	8	1	67	1.27
110508768--110508810	12	3.3	12	81	12	50	13	9	2	74	1.16
110508864--110508928	27	2.4	28	94	5	123	36	7	0	55	1.29
110522876--110522910	16	2.2	16	100	0	70	42	25	0	31	1.55
110530099--110530209	56	1.9	59	87	7	165	57	6	2	33	1.38
110532968--110533061	44	2.2	44	98	1	181	37	12	13	36	1.84
110533860--110533918	30	1.9	31	83	10	77	57	0	8	33	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110536798--110536845	25	1.9	25	83	8	62	56	2	6	35	1.36
110538407--110538668	39	6.6	39	89	4	380	37	24	25	12	1.91
110541736--110541785	23	2.1	24	82	10	59	10	0	10	80	0.92
110542106--110542244	68	2.0	68	100	0	278	27	7	20	45	1.77
110550264--110550299	6	6.0	6	96	0	63	36	50	0	13	1.43
110558568--110558641	3	24.7	3	94	0	130	67	0	31	1	0.99
110559101--110559146	18	2.4	21	79	13	55	71	4	15	8	1.26
110562532--110562572	19	2.1	20	86	13	59	58	7	0	34	1.26
110563252--110563286	11	3.0	12	87	8	54	51	5	5	37	1.50
110565444--110565504	32	1.9	31	83	3	77	27	13	11	47	1.77
110583102--110583166	31	2.1	31	97	0	121	55	9	15	20	1.67
110586850--110586884	12	2.9	12	91	0	52	31	11	17	40	1.85
110597452--110597484	16	2.1	16	94	5	59	69	0	0	30	0.88
110598002--110598028	2	13.5	2	100	0	54	0	51	0	48	1.00
110610888--110610936	23	2.1	24	85	11	66	24	8	12	55	1.64
110612442--110612481	19	2.0	22	85	14	59	32	47	2	17	1.61
110612543--110612780	27	9.2	26	80	13	258	36	22	24	17	1.95
110612652--110612691	18	2.2	18	100	0	80	40	12	27	20	1.88
110612598--110612745	72	2.1	72	100	0	296	36	20	25	17	1.94
110612544--110612780	126	1.9	126	93	1	413	36	21	24	17	1.95
110614391--110614500	26	4.2	26	97	0	184	36	24	5	33	1.79
110615069--110615114	19	2.4	19	81	0	56	6	10	2	80	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110615054--110615152	36	2.6	36	81	10	101	13	7	3	76	1.10
110615063--110615157	19	5.3	17	70	21	52	12	6	3	77	1.07
110615123--110615170	14	3.4	14	77	11	53	16	2	4	77	1.03
110615186--110615231	25	1.9	23	86	8	65	45	0	2	52	1.13
110615212--110615431	31	7.1	29	68	19	99	45	1	2	50	1.24
110615234--110615270	18	2.1	18	89	0	56	45	0	0	54	1.00
110615251--110615333	35	2.6	31	74	14	53	39	1	3	55	1.25
110615449--110615475	14	1.9	14	100	0	54	33	0	0	66	0.92
110615459--110615512	11	5.1	11	76	13	51	38	1	1	57	1.20
110615461--110615518	10	5.6	10	75	6	53	37	1	1	58	1.18
110615499--110615531	13	2.5	14	85	14	52	45	0	0	54	0.99
110615503--110615532	13	2.4	13	94	5	53	43	0	0	56	0.99
110615617--110615663	21	2.2	22	88	3	69	59	0	0	40	0.97
110615617--110615665	22	2.2	22	85	7	64	59	0	0	40	0.98
110615634--110615674	20	2.0	21	85	4	57	63	0	0	36	0.95
110615638--110615731	33	2.8	33	84	9	129	59	0	1	39	1.04
110615773--110615897	13	9.7	13	67	20	66	76	3	3	17	1.06
110615793--110615896	17	5.9	17	69	20	52	76	2	3	16	1.05
110615837--110615895	17	3.4	17	81	11	59	79	3	3	13	0.98
110615796--110615897	27	3.8	27	76	13	88	76	2	3	16	1.06
110616093--110616147	18	2.7	21	81	18	64	58	0	0	41	0.98
110616095--110616131	18	2.0	19	94	5	67	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110616117--110616245	36	3.7	35	88	4	199	55	1	1	41	1.18
110616378--110616443	33	2.0	33	84	3	87	57	0	1	40	1.08
110616383--110616431	13	3.8	12	84	13	53	59	0	2	38	1.09
110616367--110616488	23	5.2	23	73	21	92	54	1	0	42	1.15
110616024--110616449	215	2.0	215	87	6	623	52	1	2	43	1.23
110616354--110616504	47	3.2	46	78	11	153	56	2	0	39	1.18
110616498--110616538	22	1.9	21	85	14	57	80	2	2	14	0.92
110622112--110622145	17	2.0	17	94	0	59	50	0	0	50	1.00
110624368--110624446	33	2.3	36	80	12	94	45	5	1	48	1.32
110633321--110633416	45	2.1	45	92	1	156	37	20	7	34	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352