genome.fa.s11.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  129  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41425217--41425368	40	3.8	40	89	5	227	26	23	26	24	2.00
41428665--41428774	46	2.3	48	90	7	172	34	7	25	32	1.83
41711180--41711383	40	5.1	40	88	5	281	23	22	27	25	1.99
41714034--41714173	50	2.8	51	84	6	171	27	17	26	29	1.97
41716605--41716638	15	2.3	15	90	5	52	41	23	17	17	1.90
41719053--41719197	40	3.6	40	88	1	193	24	21	28	25	1.99
41719053--41719224	80	2.2	80	82	3	204	23	20	27	27	1.99
41727175--41727400	40	5.7	40	88	4	305	24	21	26	26	1.99
41730403--41730456	27	2.0	27	96	0	99	25	9	16	48	1.76
41732401--41732433	17	1.9	17	100	0	66	18	12	12	57	1.64
41735511--41735629	29	4.2	29	84	2	152	28	14	26	31	1.95
41738957--41739082	29	4.5	28	77	16	127	26	31	14	27	1.95
41739169--41739206	19	2.1	19	90	5	60	13	39	18	28	1.88
41746769--41746892	28	4.4	28	74	15	92	28	31	11	29	1.91
41746768--41746880	29	3.9	30	78	12	94	27	32	11	28	1.91
41746983--41747019	19	2.0	19	94	5	67	13	32	21	32	1.92
41748684--41748844	43	3.7	43	78	12	161	31	26	18	24	1.97
41750802--41750859	26	2.2	27	78	12	66	36	29	8	25	1.86
41750965--41751078	28	4.2	28	82	3	135	19	25	21	34	1.96
41750963--41751078	55	2.1	54	82	6	144	18	25	21	34	1.96
41761458--41761599	39	3.6	39	96	0	239	25	28	21	25	1.99
41763690--41763727	14	2.7	14	88	8	51	57	21	0	21	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41765497--41765650	43	3.6	42	78	11	152	30	25	19	24	1.98
41765497--41765653	86	1.8	85	81	11	196	30	26	19	23	1.98
41766733--41766796	34	1.9	33	93	3	110	18	25	26	29	1.98
41769964--41770075	27	4.2	26	86	6	134	20	23	19	36	1.95
41773980--41774039	26	2.3	26	82	0	66	35	26	10	28	1.89
41774142--41774232	27	3.3	27	87	6	121	18	20	21	38	1.93
41774142--41774257	27	4.3	26	82	7	115	21	21	18	37	1.94
41781797--41781844	25	1.9	25	86	0	69	33	20	14	31	1.93
41781977--41782036	26	2.4	25	83	5	84	30	23	23	23	1.99
41781987--41782048	26	2.4	26	91	0	97	22	25	20	30	1.98
41782268--41782350	31	2.7	31	88	1	132	32	20	25	21	1.98
41788529--41788713	79	2.3	82	83	7	229	24	27	22	24	2.00
41788510--41788713	40	5.1	40	81	8	229	24	27	22	25	2.00
41793126--41793173	25	1.9	25	82	0	60	33	20	16	29	1.95
41793226--41793263	20	2.0	19	90	10	60	31	13	21	34	1.91
41793306--41793365	25	2.3	26	80	2	68	35	20	18	26	1.95
41793319--41793377	26	2.3	26	85	2	75	28	22	15	33	1.94
41793595--41793673	31	2.5	31	79	0	95	35	18	24	21	1.96
41798966--41799190	40	5.6	40	86	7	296	24	22	28	25	1.99
41798966--41799164	83	2.4	83	88	4	289	23	21	29	25	1.99
41799012--41799190	83	2.2	82	89	4	238	23	21	30	24	1.99
41803227--41803286	30	2.0	30	87	6	86	28	25	6	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41804834--41804897	12	5.3	12	79	7	76	45	12	0	42	1.42
41804834--41804897	24	2.6	25	90	4	96	45	12	0	42	1.42
41814970--41815207	39	6.1	39	94	0	404	23	30	23	21	1.99
41819618--41819724	52	2.1	52	92	0	178	36	22	14	27	1.92
41831992--41832176	50	3.7	49	83	3	219	30	27	16	25	1.96
41835350--41835436	20	4.3	20	86	2	122	36	9	18	35	1.83
41835372--41835428	9	5.9	9	80	15	69	36	3	19	40	1.69
41835484--41835578	25	3.8	26	76	6	90	26	22	22	29	1.99
41835800--41835860	31	2.0	31	96	0	113	31	11	26	31	1.91
41836319--41836705	194	2.0	194	96	0	720	25	21	18	34	1.96
41843515--41843562	25	1.9	25	82	0	60	35	20	16	27	1.94
41843697--41843774	25	3.2	24	78	7	86	29	16	20	33	1.95
41843988--41844051	31	2.1	31	90	0	101	37	12	21	28	1.90
41845471--41845524	28	1.9	28	88	0	81	31	29	9	29	1.88
41845535--41845610	40	1.9	40	84	10	102	36	30	14	18	1.91
41847967--41848096	24	5.4	24	93	0	215	28	22	20	29	1.98
41848146--41848212	20	3.3	20	85	0	89	34	22	11	31	1.90
41852198--41852699	49	10.3	49	95	0	909	29	28	8	33	1.86
41854538--41854776	42	5.5	42	72	9	133	29	28	16	25	1.97
41854557--41854712	84	1.9	84	82	2	197	30	30	15	24	1.95
41857583--41857674	40	2.3	40	84	3	114	31	26	16	26	1.96
41860181--41860321	25	5.4	25	75	12	131	46	10	21	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41860169--41860228	6	9.8	6	75	10	59	50	11	20	18	1.77
41860181--41860279	31	3.4	29	72	21	91	45	11	21	22	1.83
41860181--41860247	31	2.2	31	94	0	116	46	11	22	19	1.82
41860211--41860328	50	2.4	50	86	2	166	45	11	20	22	1.83
41860658--41860722	22	3.0	22	82	8	87	32	23	24	20	1.98
41861129--41861251	27	4.6	27	81	0	147	26	18	18	36	1.94
41869475--41869619	40	3.6	40	85	4	193	25	24	26	23	2.00
41872360--41872400	17	2.5	17	88	4	57	56	14	4	24	1.58
41872368--41872402	17	2.1	17	94	0	61	57	11	5	25	1.56
41879240--41879408	67	2.6	64	76	8	180	29	17	29	23	1.97
41883767--41883881	43	2.7	42	76	11	117	34	24	15	25	1.95
41894245--41894333	27	3.3	27	77	3	99	40	19	15	24	1.90
41895240--41895334	27	3.6	27	94	2	158	40	16	16	26	1.90
41896932--41897116	79	2.3	80	80	7	198	24	21	27	27	1.99
41896932--41897116	40	4.7	40	81	6	207	24	21	27	27	1.99
41896985--41897149	79	2.1	79	80	6	183	26	19	27	27	1.99
41899420--41899536	27	4.4	27	82	6	141	41	21	13	23	1.89
41899420--41899536	52	2.2	54	81	6	141	41	21	13	23	1.89
41899632--41899657	10	2.6	10	100	0	52	11	34	46	7	1.69
41900058--41900111	27	2.0	27	96	0	99	35	25	14	24	1.94
41902575--41902629	18	3.1	18	81	0	65	49	14	18	18	1.80
41902960--41903095	27	5.1	27	83	1	166	39	16	15	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41903203--41903236	17	1.9	17	88	5	50	17	35	29	17	1.93
41905915--41906085	50	3.4	50	88	0	243	26	21	15	37	1.92
41907018--41908037	507	2.0	507	99	0	2031	36	18	9	35	1.84
41913997--41914030	14	2.4	14	100	0	68	35	0	29	35	1.58
41915759--41915942	40	4.6	40	87	5	239	24	23	26	25	2.00
41917224--41917970	49	15.6	49	90	4	1186	33	8	28	29	1.87
41917224--41917970	96	7.8	96	97	0	1365	33	8	28	29	1.87
41919432--41919770	40	8.5	40	87	0	471	25	22	26	25	2.00
41919982--41920090	57	1.9	57	84	1	146	24	18	29	27	1.98
41920124--41920312	90	2.1	89	99	1	369	28	14	27	29	1.96
41920167--41920315	47	3.3	47	70	14	166	29	15	26	28	1.96
41923760--41924425	49	13.6	49	87	7	944	33	8	29	29	1.86
41923760--41924425	96	6.8	96	89	6	996	33	8	29	29	1.86
41924048--41924076	14	2.1	14	100	0	58	34	0	34	31	1.58
41923999--41924123	61	2.0	62	95	3	225	34	6	29	29	1.82
41924020--41924117	31	3.2	31	69	23	98	33	8	30	27	1.86
41923760--41924364	302	2.0	303	97	0	1131	33	8	28	29	1.86
41932405--41932469	30	2.3	28	82	17	82	72	1	7	18	1.17
41932405--41932469	26	2.3	29	85	15	84	72	1	7	18	1.17
41940351--41940390	21	1.9	21	100	0	80	42	5	22	30	1.75
41944148--41944234	45	1.9	45	88	0	129	36	22	12	27	1.91
41947324--41947413	29	3.2	29	85	6	105	26	28	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41947628--41947666	16	2.4	16	95	0	69	7	23	23	46	1.78
41954834--41954934	37	2.7	37	96	3	186	23	32	18	24	1.97
41955096--41955992	47	18.7	47	90	3	1409	29	28	8	32	1.87
41955096--41955992	96	9.3	96	95	0	1532	29	28	8	32	1.87
41958471--41958727	40	6.4	40	82	4	306	28	27	21	23	1.99
41958471--41958727	80	3.2	80	91	2	385	28	27	21	23	1.99
41966967--41967223	40	6.4	40	82	4	324	27	28	21	22	1.99
41966967--41967223	80	3.2	80	92	2	403	27	28	21	22	1.99
41971620--41971795	29	6.1	29	85	2	194	27	30	14	27	1.95
41971625--41971789	87	1.9	86	83	3	215	26	30	15	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352