genome.fa.s11.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  152  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49849020--49849067	21	2.3	21	88	0	69	29	6	0	64	1.18
49850143--49850184	20	2.1	20	90	0	66	23	4	4	66	1.30
49850384--49850460	40	1.9	41	82	12	97	64	0	0	35	0.93
49850439--49850485	22	2.1	22	88	4	67	76	0	0	23	0.78
49850821--49850913	46	2.0	46	93	2	161	48	10	6	34	1.64
49852436--49852528	9	9.7	9	71	21	64	64	3	6	25	1.33
49852436--49852528	20	4.8	19	76	12	82	64	3	6	25	1.33
49852436--49852527	21	4.7	20	74	19	70	65	3	6	25	1.32
49852780--49852830	25	2.0	23	85	14	66	27	1	1	68	1.11
49852758--49852890	69	1.9	68	80	10	155	30	2	3	63	1.21
49852866--49852901	16	2.2	16	90	0	54	27	2	0	69	1.02
49852876--49852906	16	1.9	16	93	0	53	22	3	0	74	0.96
49855806--49855983	27	6.6	27	83	3	205	26	15	28	29	1.96
49855807--49855962	82	1.9	81	88	3	233	26	15	28	29	1.96
49855803--49855983	82	2.2	81	83	2	229	27	15	27	29	1.96
49865130--49865163	17	2.1	17	88	5	52	38	17	5	38	1.74
49872829--49872952	60	2.1	60	86	1	169	37	25	13	23	1.92
49874162--49874208	23	2.0	24	88	12	71	42	29	0	27	1.56
49876250--49876425	96	1.8	96	82	8	230	26	17	30	25	1.97
49876252--49876428	49	3.6	49	76	8	166	27	17	29	25	1.97
49888455--49888613	80	2.0	80	93	0	273	44	11	6	37	1.67
49889631--49889665	18	2.0	17	88	5	52	51	5	0	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49890791--49890824	13	2.5	14	90	4	52	85	2	0	11	0.71
49893498--49893674	40	4.5	40	87	2	234	24	28	23	22	1.99
49899604--49899780	27	6.6	27	83	5	196	29	28	15	27	1.96
49899625--49899779	81	1.9	81	88	5	233	29	28	15	27	1.96
49904192--49904359	41	4.1	40	82	6	169	38	23	20	17	1.93
49904524--49904603	21	3.9	21	71	21	78	28	1	26	43	1.62
49909389--49909491	43	2.4	43	91	3	172	19	21	32	27	1.97
49910460--49910650	40	4.8	40	92	0	285	26	29	22	21	1.99
49910434--49910650	80	2.7	79	87	4	294	26	28	22	23	1.99
49913379--49913406	14	2.0	14	100	0	56	14	64	0	21	1.29
49913380--49913413	14	2.4	14	90	0	50	17	55	0	26	1.42
49920564--49920605	20	2.1	20	100	0	84	23	9	23	42	1.83
49925823--49925966	39	3.6	40	84	6	184	23	26	24	25	2.00
49927155--49927230	38	2.0	38	100	0	152	31	23	13	31	1.93
49928428--49928597	43	4.0	44	77	7	170	34	22	16	26	1.95
49928428--49928598	86	2.0	85	82	5	211	33	22	16	26	1.96
49929303--49929331	11	2.7	11	94	5	51	65	17	0	17	1.27
49933612--49933769	48	3.3	47	72	13	142	32	27	14	25	1.95
49933612--49933771	24	6.7	24	70	8	110	32	28	14	25	1.94
49944154--49944443	50	5.9	49	80	3	339	27	25	20	26	1.99
49944150--49944441	99	2.9	99	91	1	460	28	24	20	27	1.99
49947321--49947434	27	4.2	27	81	8	81	35	23	7	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49947429--49947678	27	9.3	27	87	0	329	35	20	19	25	1.96
49947875--49947990	27	4.3	26	90	5	151	19	22	21	36	1.95
49948180--49948219	12	3.3	12	82	0	53	20	15	12	52	1.74
49960951--49960986	16	2.2	16	100	0	72	52	16	19	11	1.73
49961212--49961311	29	3.5	28	86	1	128	26	17	31	26	1.97
49971209--49971243	12	2.8	12	95	4	61	14	2	5	77	1.07
49975859--49975978	43	2.8	42	82	9	127	27	18	24	30	1.98
49977409--49977443	12	2.9	12	86	0	52	34	0	42	22	1.54
49978820--49978893	27	2.7	27	97	0	139	40	22	17	18	1.91
49982507--49982613	26	4.2	26	95	2	189	37	25	6	30	1.81
49982507--49982613	51	2.1	52	94	1	189	37	25	6	30	1.81
49982976--49983098	43	2.9	43	83	1	149	29	14	24	31	1.95
49986611--49986732	45	2.7	44	86	10	167	27	22	29	20	1.98
49993661--49993869	46	4.5	44	78	10	188	27	19	29	23	1.98
49998049--49998134	43	1.9	44	82	15	106	27	27	17	26	1.98
49999614--49999658	23	1.9	23	81	4	54	33	22	28	15	1.95
50003964--50003990	5	5.4	5	100	0	54	0	18	0	81	0.69
50012672--50012721	25	2.0	25	100	0	100	40	8	16	36	1.77
50013127--50013174	23	2.1	23	100	0	96	31	4	20	43	1.71
50014073--50014099	13	2.1	13	100	0	54	22	33	29	14	1.94
50022152--50022281	27	4.8	27	75	3	100	27	19	17	35	1.94
50022625--50022672	18	2.7	18	80	0	60	22	20	14	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50031614--50031880	47	5.6	47	72	13	203	28	18	28	25	1.98
50031656--50031880	96	2.4	95	81	13	259	27	18	28	24	1.98
50033869--50033952	41	2.0	41	97	0	159	33	17	4	44	1.70
50035845--50035913	24	2.9	25	81	10	74	46	20	17	15	1.84
50037626--50037748	43	2.9	41	80	8	140	28	15	25	30	1.96
50046236--50046460	47	4.9	45	73	12	163	25	28	18	27	1.98
50046797--50046853	30	1.9	30	100	0	114	29	26	12	31	1.92
50048204--50048424	47	4.6	48	74	13	174	28	19	28	24	1.98
50055434--50055474	14	2.8	14	85	7	55	14	4	0	80	0.87
50055435--50055473	20	1.9	21	89	5	62	15	5	0	79	0.90
50059770--50059804	7	5.0	7	100	0	70	28	14	0	57	1.38
50060053--50060114	25	2.5	25	84	7	81	27	24	20	27	1.99
50060162--50060228	20	3.3	20	91	4	109	35	19	8	35	1.83
50060147--50060226	40	2.0	39	83	13	101	37	18	8	35	1.82
50060162--50060219	11	5.6	11	78	15	70	36	18	8	36	1.82
50060170--50060226	9	5.8	10	80	15	66	38	21	5	35	1.76
50067823--50067857	7	5.0	7	100	0	70	28	14	0	57	1.38
50068085--50068182	25	3.9	25	84	5	119	30	20	22	26	1.98
50068240--50068326	20	4.3	20	95	2	149	34	20	10	34	1.87
50068226--50068326	40	2.5	40	87	9	127	34	19	10	34	1.87
50068240--50068315	11	7.5	11	71	16	74	34	21	10	34	1.87
50068248--50068304	9	5.9	9	75	15	51	36	22	7	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50075906--50076083	27	6.6	27	81	3	169	29	26	15	28	1.96
50078381--50078509	62	2.1	62	97	0	240	21	24	12	41	1.87
50078381--50078480	35	3.1	35	62	26	92	23	23	12	42	1.87
50083954--50084524	48	11.9	48	93	2	907	35	6	27	30	1.82
50084665--50084836	37	4.6	37	97	0	317	24	19	31	24	1.98
50095107--50095178	22	3.3	22	92	3	110	19	26	30	23	1.98
50101194--50101344	24	6.3	24	69	12	105	36	21	23	18	1.95
50103213--50104040	412	2.0	410	98	0	1595	30	20	13	35	1.91
50115331--50115370	21	1.9	21	84	0	53	50	5	7	37	1.53
50123029--50123058	8	3.6	8	95	4	51	50	0	33	16	1.46
50123120--50123293	45	3.9	45	79	1	170	39	14	20	25	1.90
50128020--50128073	20	2.7	20	94	0	90	18	33	31	16	1.93
50130490--50130529	19	2.1	19	90	0	62	35	12	12	40	1.81
50138228--50138309	42	2.0	42	87	4	121	35	24	10	29	1.90
50140370--50140433	31	2.1	31	90	0	101	25	23	15	35	1.94
50140646--50140769	24	5.2	24	92	1	196	25	20	22	30	1.98
50140646--50140770	47	2.6	48	89	2	207	25	20	22	31	1.98
50140819--50140885	20	3.3	20	93	0	116	32	20	11	34	1.90
50140819--50140874	11	5.5	11	71	16	57	32	19	12	35	1.89
50148495--50148558	31	2.1	31	90	0	101	25	23	15	35	1.94
50148774--50148936	24	7.0	24	89	4	244	27	20	22	28	1.99
50148987--50149025	20	2.0	20	100	0	78	30	20	12	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50148988--50149032	20	2.2	20	92	0	72	31	22	13	33	1.92
50153567--50153770	40	5.1	40	79	8	157	25	26	22	25	2.00
50153586--50153770	79	2.3	80	79	8	207	25	27	22	24	2.00
50161679--50161861	79	2.3	80	82	7	221	26	27	21	24	2.00
50161677--50161861	40	4.7	40	82	6	207	26	27	21	24	1.99
50173671--50173801	46	2.8	46	90	0	190	22	19	25	32	1.98
50190790--50190832	22	2.0	22	90	0	68	41	4	0	53	1.21
50194667--50194790	27	4.6	27	79	7	128	41	22	8	28	1.82
50194667--50194817	54	2.8	53	78	8	162	41	21	8	28	1.83
50194743--50194821	27	2.9	28	83	7	83	40	18	11	29	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352