genome.fa.s11.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  128  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41191166--41191383	27	8.1	27	83	2	249	39	7	23	29	1.82
41191166--41191383	81	2.7	81	85	0	283	39	7	23	29	1.82
41191392--41191461	27	2.6	27	83	0	77	30	22	15	31	1.95
41193295--41193437	6	23.3	6	74	14	114	49	14	16	18	1.79
41193295--41193434	49	2.8	49	88	5	194	49	15	17	18	1.80
41193358--41193433	31	2.5	31	82	0	89	50	14	15	19	1.79
41193616--41193765	67	2.2	67	90	0	228	32	18	28	21	1.97
41193987--41194205	27	8.1	27	84	2	260	42	7	21	28	1.81
41193999--41194209	54	3.9	55	86	3	304	41	8	20	29	1.81
41193987--41194209	81	2.7	81	84	3	295	42	7	21	28	1.80
41199234--41199488	55	4.8	55	79	11	250	38	16	24	21	1.93
41199243--41199441	108	1.8	110	88	6	307	37	15	24	22	1.93
41199395--41199488	49	1.9	49	93	0	161	40	17	23	19	1.91
41199657--41199687	16	1.9	16	93	0	53	41	0	22	35	1.54
41207276--41207525	40	6.3	41	84	3	264	24	20	26	28	1.99
41210243--41210450	55	3.8	53	76	13	201	36	16	25	22	1.94
41210250--41210450	108	1.8	110	87	4	300	35	16	25	22	1.95
41210666--41210696	16	1.9	16	93	0	53	41	0	22	35	1.54
41217812--41218014	55	3.8	53	74	7	185	35	17	23	23	1.95
41222854--41222887	15	2.3	15	90	5	52	50	2	17	29	1.61
41224467--41224587	25	4.8	25	79	2	100	30	27	18	23	1.98
41224769--41224815	13	3.6	13	73	21	53	34	2	27	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41224766--41224819	26	2.1	26	96	0	99	37	3	24	35	1.73
41227883--41227956	35	2.1	35	97	0	139	39	9	24	27	1.86
41228849--41228885	16	2.3	16	90	0	56	62	8	8	21	1.49
41243334--41243481	40	3.7	40	87	1	181	24	21	28	25	1.99
41243330--41243501	80	2.2	80	81	3	195	24	20	27	27	1.99
41250718--41250814	28	3.4	29	80	12	103	29	27	14	27	1.95
41258718--41258789	29	2.5	29	91	6	112	27	27	15	29	1.96
41258716--41258818	28	3.6	27	77	15	93	28	30	14	27	1.95
41265421--41265481	21	2.8	20	72	16	52	59	1	1	37	1.17
41269642--41269855	46	4.6	47	77	9	192	21	28	20	28	1.98
41269680--41269855	94	1.9	92	84	6	239	21	28	21	28	1.98
41273020--41273179	86	1.9	85	83	6	207	28	26	19	25	1.99
41273028--41273186	43	3.7	43	71	18	116	29	25	18	26	1.98
41278153--41278226	31	2.4	31	86	2	114	29	28	13	28	1.94
41278446--41278515	25	2.8	25	91	0	104	24	21	25	28	1.99
41279443--41279528	27	3.1	27	75	17	86	34	8	16	40	1.78
41279506--41279629	27	4.6	27	80	4	142	27	4	24	43	1.74
41279428--41279629	54	3.7	54	75	7	176	30	7	20	41	1.79
41279429--41279629	110	1.8	108	80	6	235	30	7	20	41	1.80
41279507--41279659	81	1.9	81	83	2	200	28	7	21	43	1.79
41279661--41279752	27	3.4	28	82	5	109	42	6	21	29	1.78
41281221--41281246	8	3.2	8	100	0	52	88	0	0	11	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41282333--41282402	25	2.8	25	93	0	113	25	21	25	27	1.99
41283213--41283290	27	2.9	27	79	11	88	20	20	21	37	1.95
41283331--41283382	27	1.9	27	85	14	72	34	11	11	42	1.77
41283393--41283519	27	4.7	27	78	5	121	26	6	21	45	1.75
41283405--41283519	54	2.1	55	83	4	144	28	6	20	44	1.77
41283555--41283642	27	3.3	27	86	0	122	39	6	25	28	1.81
41287101--41287161	30	2.0	30	83	0	77	31	22	8	37	1.84
41291460--41291510	26	2.0	26	100	0	102	27	27	21	23	1.99
41292833--41292877	21	2.2	20	88	11	65	28	22	28	20	1.98
41293047--41293124	23	3.0	27	83	14	119	26	29	19	24	1.98
41293672--41293810	47	3.0	47	78	16	137	23	30	16	28	1.96
41293672--41293768	48	2.1	46	84	11	126	23	35	14	26	1.93
41295879--41295977	35	2.8	35	81	3	110	29	18	14	38	1.90
41296090--41296186	50	2.0	50	81	2	115	28	17	15	38	1.90
41304046--41304167	43	2.9	42	73	7	138	27	22	15	34	1.94
41305249--41305274	13	2.0	13	100	0	52	53	15	0	30	1.42
41307471--41307628	40	4.0	40	95	0	271	22	18	29	30	1.97
41307486--41307654	80	2.1	80	86	0	230	22	19	28	29	1.98
41309340--41309375	16	2.2	16	100	0	72	5	16	44	33	1.71
41315753--41315790	13	2.8	14	88	4	51	73	2	2	21	1.07
41317464--41317507	20	2.2	20	91	0	70	9	22	40	27	1.84
41319666--41319729	31	2.1	31	84	0	83	25	20	14	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41319923--41320041	23	5.0	24	88	5	163	29	21	21	27	1.98
41320090--41320156	20	3.3	20	87	0	98	34	20	10	34	1.87
41320193--41320240	25	1.9	25	86	0	69	25	16	25	33	1.96
41322357--41322574	40	5.5	40	88	2	298	23	28	24	22	1.99
41331086--41331149	31	2.1	31	88	5	94	26	23	14	35	1.93
41331357--41331461	23	4.4	24	93	3	160	31	21	18	28	1.97
41331512--41331576	20	3.2	20	88	0	103	32	24	12	30	1.92
41333887--41333951	28	2.3	28	84	5	87	35	29	7	27	1.85
41334057--41334146	28	3.2	27	75	13	85	20	25	22	32	1.98
41334067--41334145	27	2.8	27	86	5	104	21	27	18	31	1.97
41334067--41334157	27	3.2	28	80	10	89	21	28	18	30	1.97
41339173--41339428	47	5.4	47	93	0	413	28	30	8	32	1.87
41340384--41340491	49	2.2	49	95	3	193	31	27	7	33	1.84
41343552--41343987	40	10.9	40	91	0	667	25	26	22	25	2.00
41344040--41344117	38	2.1	38	85	4	104	25	25	17	30	1.97
41346251--41346609	47	7.6	47	94	0	592	29	30	8	32	1.87
41353121--41353185	28	2.3	28	86	5	87	33	27	7	30	1.85
41353291--41353380	27	3.2	27	85	7	119	18	25	23	32	1.97
41360850--41360883	14	2.4	14	90	9	52	17	5	0	76	0.98
41361181--41361208	9	3.1	9	100	0	56	32	25	10	32	1.90
41368854--41368964	55	2.0	55	82	3	134	28	27	27	16	1.97
41378142--41378658	48	10.8	48	93	0	872	34	6	27	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41380716--41381018	40	7.6	40	90	1	464	23	21	29	25	1.99
41381194--41381244	25	2.0	25	81	7	59	33	13	31	21	1.92
41384082--41384591	48	10.8	48	91	2	782	34	6	27	31	1.82
41384111--41384580	233	2.0	233	92	0	778	35	6	27	31	1.81
41387479--41387880	86	4.7	85	75	7	260	30	27	20	21	1.98
41387437--41387880	43	10.3	42	74	9	224	30	27	20	21	1.98
41387437--41387686	85	2.9	82	80	9	261	30	26	21	22	1.98
41388208--41388265	21	2.8	20	82	5	71	3	48	18	29	1.65
41393823--41393959	9	14.6	9	73	8	112	31	2	21	45	1.64
41393823--41393954	48	2.8	48	79	3	149	31	2	21	45	1.64
41393823--41393959	57	2.4	57	83	0	166	31	2	21	45	1.64
41395860--41395914	24	2.2	26	78	12	62	52	1	7	38	1.40
41397314--41397359	7	6.6	7	79	0	56	43	36	0	19	1.51
41397314--41397386	21	3.4	21	75	11	67	45	32	0	21	1.53
41397839--41397882	14	3.1	14	80	9	54	31	47	0	20	1.50
41398081--41398118	13	2.9	13	81	11	51	60	2	0	36	1.11
41398546--41398680	50	2.7	50	77	10	150	49	34	1	14	1.52
41398609--41398646	15	2.7	14	80	11	51	36	47	0	15	1.46
41398635--41398688	14	3.8	15	73	7	51	51	33	1	12	1.51
41398649--41398693	22	2.1	21	87	4	63	48	31	2	17	1.59
41398715--41398739	7	3.6	7	100	0	50	60	24	0	16	1.36
41400568--41400631	11	5.6	11	75	15	51	12	9	1	76	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41400579--41400625	17	2.8	17	83	6	60	10	8	2	78	1.04
41400579--41400631	23	2.3	23	83	0	61	11	9	1	77	1.07
41406305--41406459	42	3.7	41	81	5	175	29	15	23	31	1.95
41406369--41406450	43	1.9	43	84	0	110	28	18	23	30	1.97
41406731--41406817	46	1.9	45	95	2	156	21	24	12	41	1.88
41408753--41408878	40	3.2	40	90	1	182	28	26	21	23	1.99
41417380--41417433	28	1.9	28	92	0	90	31	14	24	29	1.95
41422166--41422654	47	10.4	47	94	0	807	32	8	29	29	1.88
41422773--41422851	37	2.1	37	90	0	122	24	18	31	25	1.98
41424754--41424827	29	2.6	29	89	4	105	25	16	32	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352