genome.fa.s11.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  33  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10692166--10692334	93	1.8	93	86	0	248	29	29	20	20	1.98
10706097--10706121	3	8.3	3	100	0	50	68	0	32	0	0.90
10711919--10712007	20	4.4	20	80	7	90	25	19	13	41	1.88
10711934--10712007	20	3.7	20	83	1	94	27	17	14	40	1.89
10711934--10712041	42	2.6	41	84	5	121	24	18	16	40	1.90
10714973--10715200	46	5.0	46	87	0	294	41	14	22	21	1.89
10717372--10717535	42	3.7	42	80	8	168	29	26	14	29	1.95
10717538--10717699	53	3.1	51	79	12	170	30	26	14	27	1.95
10720233--10720257	13	1.9	13	100	0	50	52	16	24	8	1.70
10728267--10728436	86	2.0	86	98	0	331	31	20	11	35	1.89
10727873--10728928	565	1.9	560	98	0	1837	31	24	13	31	1.93
10731681--10731717	18	2.0	18	89	5	56	32	8	2	56	1.43
10745329--10745639	128	2.5	125	84	4	383	36	18	15	29	1.92
10745396--10745678	125	2.2	128	84	3	358	37	21	15	25	1.92
10748379--10748412	18	2.0	18	88	11	54	35	5	5	52	1.50
10753668--10753721	28	1.9	29	85	7	76	53	5	3	37	1.42
10755817--10755870	24	2.2	24	90	0	81	14	44	16	24	1.85
10758268--10758299	16	2.0	16	100	0	64	37	25	6	31	1.81
10767048--10767087	16	2.3	18	83	12	57	52	17	0	30	1.45
10770766--10770841	25	3.0	25	90	0	116	46	18	17	18	1.85
10771382--10771463	40	2.0	40	100	0	164	32	13	2	51	1.54
10776240--10776359	21	5.8	21	80	1	127	45	17	19	18	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10776257--10776379	42	2.9	42	85	0	156	47	17	16	19	1.83
10776240--10776359	63	1.9	61	84	3	159	45	17	19	18	1.86
10776253--10776378	63	2.0	63	80	0	144	47	17	15	19	1.83
10776674--10776720	6	7.5	6	81	9	58	76	2	0	21	0.89
10776739--10776788	18	2.8	18	81	0	64	30	10	20	40	1.85
10776975--10777074	21	4.8	21	72	4	85	48	14	20	18	1.82
10776948--10777074	42	3.0	42	76	8	132	46	14	19	19	1.84
10778861--10778900	21	1.9	21	89	0	62	27	30	15	27	1.96
10783416--10783454	20	2.0	20	89	0	60	12	30	33	23	1.92
10785014--10785062	25	2.0	25	95	0	89	36	20	10	32	1.86
10786587--10786623	13	2.8	13	91	4	56	51	21	0	27	1.48
10787959--10787989	16	1.9	16	93	0	53	16	9	0	74	1.07
10788243--10788330	44	2.0	44	100	0	176	27	15	11	45	1.81
10790841--10790932	30	3.1	30	82	7	107	53	8	2	35	1.44
10790841--10790932	31	3.1	29	82	4	94	53	8	2	35	1.44
10791863--10791901	16	2.4	17	83	12	55	51	0	2	46	1.14
10792452--10792490	14	2.8	14	88	0	51	41	15	2	41	1.61
10792538--10792594	26	2.1	27	87	3	80	29	5	5	59	1.41
10792906--10792959	23	2.3	23	81	6	56	16	14	0	68	1.21
10794861--10794885	12	2.1	12	100	0	50	16	24	20	40	1.91
10794997--10795168	18	9.6	18	83	0	191	38	10	15	36	1.81
10794997--10795168	54	3.2	54	91	1	274	38	10	15	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10796605--10796680	29	2.6	29	87	4	98	44	14	13	27	1.82
10797547--10797583	17	2.2	17	90	9	58	32	10	5	51	1.60
10799030--10799063	12	2.9	12	86	4	52	32	0	0	67	0.91
10799186--10799248	30	2.1	30	91	5	101	58	7	4	28	1.47
10799278--10799320	22	2.0	22	90	0	68	60	11	9	18	1.57
10803363--10803444	37	2.2	36	81	10	94	52	2	3	41	1.32
10807092--10807161	35	2.0	35	94	0	122	30	18	21	30	1.97
10808606--10808676	35	2.0	35	100	0	142	36	2	25	35	1.71
10813302--10813349	24	1.9	26	84	16	66	58	6	0	35	1.23
10813790--10813838	3	16.3	3	100	0	98	65	0	0	34	0.93
10814376--10814408	17	1.9	17	93	0	57	12	9	0	78	0.95
10815398--10815439	13	3.4	12	81	15	50	78	9	2	9	1.05
10815399--10815452	25	2.1	27	86	6	76	74	12	1	11	1.16
10815394--10815441	11	3.8	13	75	13	55	77	10	2	10	1.09
10815890--10815929	21	1.9	21	85	10	55	17	7	5	70	1.30
10820876--10820907	16	2.0	16	93	0	55	34	0	0	65	0.93
10821274--10821335	29	2.2	29	91	2	99	51	25	4	17	1.65
10821376--10821405	13	2.2	14	94	5	53	36	36	3	23	1.71
10821489--10821522	18	1.9	17	88	5	50	35	17	0	47	1.48
10822053--10822160	26	4.2	26	97	0	198	35	6	23	35	1.80
10824826--10824864	20	2.0	20	85	10	53	69	7	2	20	1.26
10827773--10827880	26	4.2	26	95	0	180	35	6	23	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10831603--10831778	46	3.8	46	77	10	187	21	21	28	28	1.98
10831600--10831771	93	1.8	93	91	0	281	22	21	28	27	1.99
10834476--10834521	24	2.0	24	83	12	60	28	13	4	54	1.57
10834776--10834902	46	2.8	46	87	2	175	19	23	14	41	1.89
10834871--10834943	38	1.9	38	97	0	137	24	26	16	32	1.96
10837850--10837891	13	3.2	13	80	9	50	52	0	0	47	1.00
10837857--10837890	17	2.0	17	94	0	59	50	0	0	50	1.00
10838723--10838811	22	3.9	22	75	10	72	40	20	22	16	1.91
10838817--10838849	5	6.6	5	86	13	50	81	0	0	18	0.68
10850687--10850922	46	5.2	46	81	4	246	19	23	15	41	1.89
10850705--10850922	91	2.4	92	83	3	269	19	24	15	40	1.90
10852764--10852794	16	2.0	15	93	6	53	74	0	0	25	0.82
10876722--10876755	5	6.6	5	86	6	50	76	20	0	2	0.92
10876814--10876856	21	2.0	23	90	9	72	60	2	0	37	1.10
10876822--10876866	21	2.2	21	84	11	58	66	2	0	31	1.04
10882487--10882582	29	3.2	29	81	11	90	33	12	5	48	1.63
10886706--10887113	75	5.4	75	87	1	532	31	22	20	25	1.98
10886826--10887028	35	5.5	34	67	22	115	33	23	17	25	1.96
10888990--10889215	39	5.7	40	85	2	190	21	22	26	29	1.99
10889024--10889215	39	4.9	39	86	1	213	20	22	27	29	1.99
10893950--10894121	39	4.4	39	88	2	202	22	23	26	28	1.99
10893979--10894159	39	4.6	39	87	0	209	20	22	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10893979--10894173	78	2.5	79	82	1	239	20	22	26	30	1.98
10896940--10896994	21	2.6	21	88	5	76	23	1	29	45	1.63
10897678--10897746	2	34.5	2	100	0	138	50	49	0	0	1.00
10897752--10898017	77	3.4	79	79	3	263	46	21	9	21	1.79
10897753--10897980	79	2.9	80	81	5	252	45	24	9	21	1.80
10900226--10900278	6	8.7	6	93	2	88	66	15	0	18	1.26
10900294--10900332	16	2.4	17	86	8	62	56	25	0	17	1.41
10915864--10915905	13	3.2	13	80	9	50	33	7	28	30	1.84
10923117--10923380	130	2.0	129	98	0	510	56	10	7	25	1.60
10928060--10928125	19	3.3	19	67	19	53	71	1	9	18	1.20
10931664--10931776	55	2.1	54	96	1	208	38	18	15	26	1.91
10933239--10933297	18	3.3	18	78	0	55	30	16	16	35	1.92
10934910--10934994	40	2.0	42	82	17	106	49	7	1	42	1.37
10936930--10937061	47	2.8	48	81	5	162	23	14	27	34	1.93
10940786--10940857	32	2.2	34	90	5	112	19	15	15	50	1.79
10942123--10942167	23	2.0	23	91	4	74	24	17	31	26	1.97
10945541--10945575	3	11.7	3	100	0	70	68	0	31	0	0.90
10948471--10948498	10	2.8	10	100	0	56	21	0	0	78	0.75
10948486--10948521	17	2.1	17	89	5	54	30	0	5	63	1.17
10949086--10949125	17	2.3	18	95	4	73	27	0	5	67	1.11
10949488--10949542	23	2.3	24	87	9	78	60	1	0	38	1.08
10949500--10949550	23	2.2	23	78	0	57	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10968173--10968197	11	2.3	11	100	0	50	28	0	0	72	0.86
10969323--10969383	21	3.0	20	71	7	59	22	22	9	44	1.82
10969266--10969415	42	3.6	42	78	0	165	18	22	16	44	1.87
10973414--10973497	28	3.0	28	91	1	132	19	3	30	46	1.66
10973418--10973511	28	3.6	24	78	18	91	15	4	34	45	1.66
10973702--10973788	21	4.0	22	72	15	74	16	21	26	35	1.94
10976577--10976624	20	2.3	21	92	3	80	35	10	18	35	1.85
10976675--10976744	25	2.8	25	91	0	113	25	27	22	24	2.00
10976674--10976757	25	3.4	24	85	6	107	28	25	22	23	1.99
10977732--10977858	38	3.3	38	94	3	211	22	24	19	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352