Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  323  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104650289--104650333
21
2.1
21
87
0
63
64
0
6
28
1.19
104653210--104653247
20
1.9
20
89
10
60
63
0
0
36
0.95
104653690--104653738
20
2.5
20
82
0
53
55
6
8
30
1.54
104656978--104657002
5
5.0
5
100
0
50
80
0
0
20
0.72
104656934--104657285
86
4.1
86
81
6
392
46
9
10
32
1.71
104656934--104657273
172
2.0
172
84
4
445
46
9
10
33
1.71
104657455--104657498
22
2.0
23
86
4
63
65
2
0
31
1.05
104658250--104658301
23
2.3
23
93
0
86
38
0
11
50
1.39
104658259--104658314
13
4.5
13
80
13
73
39
0
12
48
1.41
104662874--104663079
111
1.9
110
80
10
240
36
12
21
29
1.90
104669088--104669132
22
2.0
22
100
0
90
17
33
13
35
1.89
104669259--104669447
18
9.8
20
67
22
102
35
2
2
59
1.23
104669257--104669447
36
4.9
38
70
21
128
35
2
2
60
1.23
104669413--104669498
21
4.0
21
72
14
70
33
3
2
60
1.26
104672586--104672695
26
4.2
26
96
0
202
35
23
6
34
1.80
104674484--104674514
13
2.4
13
94
0
53
41
0
16
41
1.48
104680240--104680303
31
2.1
31
100
0
128
20
20
3
56
1.56
104682806--104682838
11
3.2
11
87
12
52
45
0
0
54
0.99
104682878--104682909
13
2.5
13
100
0
64
78
0
6
15
0.95
104689978--104690018
21
2.0
21
90
0
64
29
21
29
19
1.98
104692487--104693026
214
2.5
213
90
1
832
31
15
21
32
1.94
104694873--104694912
16
2.4
16
91
4
62
15
7
0
77
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104696105--104696161
22
2.6
23
81
10
66
10
21
12
56
1.65
104703660--104703725
12
5.9
11
79
11
64
62
4
0
33
1.16
104703660--104703706
22
2.1
22
88
7
69
65
4
0
29
1.11
104703656--104703725
23
3.1
22
82
12
79
62
4
0
32
1.14
104703769--104703818
24
2.1
24
85
10
68
66
2
6
26
1.26
104703805--104703893
14
5.9
15
71
16
67
62
0
2
34
1.07
104707941--104708027
18
4.8
18
78
0
93
31
22
12
33
1.92
104707941--104708031
36
2.5
36
90
0
137
30
21
13
34
1.92
104715639--104715703
32
2.0
32
100
0
130
55
3
3
38
1.31
104716493--104717531
213
4.9
210
84
4
1163
30
15
19
34
1.93
104716493--104717531
426
2.5
423
84
4
1307
30
15
19
34
1.93
104719207--104719241
17
2.0
18
88
5
54
37
0
2
60
1.12
104719416--104719449
18
1.9
17
88
5
50
52
0
2
44
1.16
104720378--104720403
6
4.3
6
100
0
52
0
61
0
38
0.96
104720500--104720550
25
2.0
25
96
0
93
5
37
3
52
1.44
104725881--104725907
14
1.9
14
100
0
54
40
22
0
37
1.54
104745459--104745568
26
4.2
26
97
0
184
33
5
24
36
1.79
104752965--104753093
30
4.4
29
66
26
74
48
1
2
47
1.24
104762854--104763057
26
8.2
23
67
25
82
35
1
0
61
1.14
104762859--104763079
19
11.7
19
68
20
94
35
2
1
61
1.17
104762855--104763107
21
11.6
22
67
21
99
34
3
1
60
1.20
104762940--104763107
65
2.5
66
73
19
154
34
3
1
60
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104762953--104763075
16
6.9
16
71
22
52
34
1
1
61
1.15
104762866--104763148
131
2.2
124
80
13
287
34
3
2
59
1.26
104763342--104763407
17
3.9
17
67
23
50
33
1
1
63
1.13
104763384--104763432
26
1.9
25
83
4
62
36
4
0
59
1.17
104767140--104767186
15
3.3
15
80
16
55
23
23
10
42
1.85
104767830--104767952
59
2.1
59
89
3
185
37
20
20
21
1.95
104774410--104774439
15
2.1
14
93
6
51
80
0
10
10
0.92
104775354--104776041
206
3.3
205
88
0
998
31
17
20
30
1.96
104777687--104777869
27
6.9
27
69
19
107
36
2
1
60
1.16
104777680--104777877
23
8.6
22
68
21
90
35
2
1
61
1.14
104777774--104777900
19
7.1
19
69
16
92
34
1
1
62
1.14
104777686--104777896
42
5.2
40
69
23
83
35
2
1
61
1.18
104777685--104777867
34
5.7
33
71
19
97
36
2
1
60
1.16
104778161--104778226
17
3.9
17
67
23
50
33
1
1
63
1.13
104778203--104778251
26
1.9
25
83
4
62
36
4
0
59
1.17
104784461--104784642
40
4.6
40
88
2
267
17
22
29
30
1.96
104784456--104784642
80
2.3
80
88
3
295
17
21
28
31
1.96
104786133--104786163
15
2.1
15
100
0
62
19
51
0
29
1.47
104792704--104792821
58
2.0
58
100
0
236
27
18
16
37
1.93
104795231--104795261
2
15.5
2
93
0
53
45
0
0
54
0.99
104799696--104799733
19
2.0
19
94
0
67
13
18
21
47
1.82
104814188--104814213
3
8.7
3
100
0
52
30
0
0
69
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104815023--104815104
38
2.1
39
84
4
103
32
8
1
57
1.37
104815023--104815080
20
3.0
20
73
19
59
32
10
1
55
1.44
104815160--104815200
19
2.1
20
90
4
66
29
2
0
68
1.03
104815928--104815996
34
2.0
34
100
0
138
50
0
17
31
1.46
104817543--104817687
67
2.2
67
98
0
281
36
9
12
41
1.76
104819451--104819475
9
2.8
9
100
0
50
0
8
0
92
0.40
104820366--104820399
5
7.0
5
93
6
61
58
0
0
41
0.98
104822307--104822349
19
2.2
21
88
12
65
55
0
2
41
1.12
104822343--104822408
19
3.5
18
76
15
62
37
0
1
60
1.06
104822353--104822414
20
3.1
21
82
15
71
41
0
1
56
1.09
104822369--104822421
20
2.7
21
82
11
58
49
0
0
50
1.00
104825737--104825765
14
2.0
15
93
6
51
20
6
6
65
1.40
104828591--104828763
46
3.7
46
81
10
217
22
20
27
29
1.99
104828588--104828759
93
1.8
93
93
0
299
22
20
27
28
1.99
104830580--104830880
40
7.6
40
92
1
455
27
28
19
24
1.99
104839570--104839738
46
3.8
45
76
16
188
21
21
27
28
1.99
104839567--104839733
89
1.8
91
92
3
284
21
21
28
28
1.99
104852994--104853044
22
2.3
22
93
0
84
13
3
50
31
1.60
104858767--104858797
5
6.2
5
92
0
53
41
3
19
35
1.67
104858769--104858799
15
2.1
15
100
0
62
41
6
19
32
1.77
104860303--104860345
22
2.0
22
95
0
77
44
9
30
16
1.79
104863451--104863578
66
1.9
68
88
3
197
33
13
20
32
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104865435--104865483
3
16.3
3
100
0
98
32
0
0
67
0.91
104868616--104868702
27
3.4
25
78
12
70
21
8
1
68
1.22
104869352--104869384
16
2.0
17
88
5
50
27
3
0
69
1.03
104869367--104869513
26
5.6
25
72
13
82
30
6
4
58
1.43
104875105--104875148
3
15.0
3
90
4
72
63
0
2
34
1.07
104881750--104881791
22
1.9
22
85
9
59
69
4
2
23
1.20
104881759--104881801
22
2.0
21
86
4
59
67
4
4
23
1.28
104883091--104883129
17
2.3
17
90
0
60
10
0
7
82
0.86
104887365--104887494
65
2.0
65
100
0
260
24
26
10
38
1.88
104890845--104890899
28
2.0
28
85
7
76
32
10
5
50
1.60
104891074--104891152
32
2.4
33
81
12
92
45
2
6
45
1.42
104891574--104891608
18
1.9
18
94
0
61
40
11
0
48
1.39
104895868--104895900
10
3.5
10
84
16
52
42
9
39
9
1.68
104896438--104896472
17
2.0
18
88
5
54
65
0
0
34
0.93
104896686--104896725
15
2.7
14
85
11
53
25
42
7
25
1.80
104896828--104896890
22
2.9
22
76
9
65
46
26
0
26
1.54
104896912--104896956
14
3.2
14
83
0
63
48
26
0
24
1.51
104897236--104897354
41
2.9
41
84
1
141
30
19
21
29
1.97
104897290--104897377
41
2.1
41
87
0
122
23
25
23
27
2.00
104897426--104897524
39
2.5
39
84
14
130
18
24
22
35
1.96
104899068--104899093
13
2.0
13
100
0
52
53
7
7
30
1.57
104901102--104901224
40
3.1
40
86
0
174
31
13
17
36
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104901110--104901238
40
3.2
40
85
0
132
30
13
19
36
1.91
104901204--104901433
78
2.9
77
86
2
316
30
14
21
32
1.94
104902868--104902921
25
2.0
28
86
10
78
62
5
0
31
1.18
104902888--104902942
25
2.2
26
83
9
69
60
5
0
34
1.20
104907394--104907435
21
2.0
22
86
13
61
71
0
4
23
1.05
104907376--104907432
19
2.8
19
76
19
53
66
1
5
26
1.22
104908993--104909268
86
3.2
86
66
16
206
26
18
18
36
1.94
104908767--104909319
175
3.2
175
89
0
867
26
19
18
35
1.95
104917453--104917502
15
3.5
15
79
15
52
44
12
22
22
1.85
104917466--104917502
15
2.5
16
87
12
53
43
10
24
21
1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352