Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  140  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45568969--45569191
104
2.2
104
92
2
369
31
31
19
17
1.95
45569520--45569583
30
2.2
29
81
10
76
29
28
6
35
1.82
45569527--45569583
30
1.9
30
85
3
80
29
24
7
38
1.82
45572696--45572737
22
1.9
22
85
0
57
42
0
21
35
1.53
45573204--45573357
42
3.7
42
78
6
141
31
18
22
27
1.97
45583203--45583366
71
2.3
71
84
4
197
32
26
14
26
1.94
45586272--45586505
48
4.8
48
78
3
254
27
26
17
28
1.97
45586272--45586524
96
2.6
96
80
5
287
26
26
18
29
1.98
45597421--45597471
24
2.1
24
100
0
102
33
19
5
41
1.76
45600656--45600859
40
5.1
40
87
4
263
25
28
23
22
1.99
45619180--45620161
487
2.0
487
95
0
1750
32
12
13
41
1.82
45626579--45626770
43
4.5
43
83
3
219
32
26
15
25
1.95
45626577--45626770
86
2.3
85
83
7
243
33
26
14
25
1.95
45630969--45631009
7
5.9
7
88
0
55
19
0
0
80
0.71
45631477--45631525
24
2.0
24
100
0
98
42
4
0
53
1.20
45631484--45631529
12
3.9
12
80
2
58
43
4
0
52
1.21
45632139--45632266
41
3.1
41
86
2
166
21
22
20
35
1.96
45632668--45632741
33
2.3
34
86
11
111
48
6
12
32
1.66
45633742--45633782
19
2.1
19
86
4
55
43
0
0
56
0.99
45635894--45635936
19
2.3
19
87
0
59
69
4
2
23
1.18
45636616--45636749
29
4.7
27
77
11
108
35
1
3
58
1.25
45636616--45636749
10
14.0
9
78
11
108
35
1
3
58
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45636705--45636753
19
2.6
19
93
0
80
30
2
4
63
1.24
45639654--45639694
21
2.0
21
95
4
75
26
0
19
53
1.45
45644708--45644749
19
2.2
20
83
12
52
30
0
19
50
1.48
45647858--45647972
48
2.4
48
89
1
178
26
17
14
40
1.88
45651865--45652344
120
4.0
120
94
1
750
42
1
5
51
1.31
45652177--45652232
15
4.1
13
76
14
51
42
0
1
55
1.10
45652181--45652223
15
2.8
16
79
10
54
44
0
2
53
1.13
45652559--45652626
16
4.2
16
96
0
127
36
36
0
26
1.57
45654947--45654981
16
2.2
16
89
0
52
54
2
2
40
1.30
45654960--45655003
22
2.0
22
86
0
61
52
0
0
47
1.00
45655023--45655063
13
2.9
14
77
22
50
53
0
2
43
1.13
45655096--45655152
15
3.5
15
73
17
60
49
3
0
47
1.18
45655678--45655702
10
2.5
10
100
0
50
48
8
0
44
1.32
45658576--45659169
47
12.6
47
95
1
1003
32
8
29
29
1.87
45658576--45659169
239
2.5
237
94
2
1034
32
8
29
29
1.87
45661308--45661447
57
2.5
57
80
4
131
25
25
17
31
1.97
45665152--45665212
30
2.0
30
83
0
77
29
24
6
39
1.80
45668365--45668466
52
2.0
52
86
0
141
35
25
14
24
1.94
45668437--45668615
45
4.0
45
83
2
225
34
25
13
26
1.93
45668437--45668615
90
2.0
90
87
2
261
34
25
13
26
1.93
45671517--45671686
46
3.7
45
78
7
180
28
27
20
23
1.99
45671565--45671708
46
3.1
44
70
17
107
29
27
19
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45677976--45678254
44
6.2
44
79
2
234
34
25
15
24
1.95
45677989--45678237
134
1.9
135
90
0
401
34
26
16
23
1.95
45677989--45678257
45
6.0
45
78
3
247
34
26
15
23
1.95
45678698--45678747
19
2.7
18
84
9
57
36
20
2
42
1.63
45679888--45679926
14
2.8
14
92
0
60
33
20
5
41
1.74
45682870--45682896
11
2.5
11
100
0
54
29
18
25
25
1.98
45686350--45686440
38
2.4
39
77
5
123
52
19
5
21
1.66
45693004--45693174
46
3.7
45
79
9
184
23
28
18
29
1.98
45692956--45693175
94
2.3
92
82
9
250
24
29
18
28
1.98
45721611--45721784
46
3.8
46
78
13
194
22
18
29
28
1.98
45721607--45721777
93
1.8
92
92
1
288
22
19
29
28
1.98
45729166--45729341
46
3.8
46
77
12
189
20
19
29
30
1.97
45729163--45729334
93
1.8
93
92
0
290
20
20
29
29
1.98
45743879--45743915
5
7.2
5
87
6
56
2
21
0
75
0.92
45743879--45743940
15
3.9
16
79
14
74
4
25
0
69
1.08
45747787--45748246
49
9.5
49
94
3
808
32
8
30
28
1.86
45747787--45748246
96
4.8
96
95
2
814
32
8
30
28
1.86
45747787--45748246
145
3.2
145
94
3
809
32
8
30
28
1.86
45752762--45752793
5
6.2
5
92
7
55
0
21
0
78
0.76
45759091--45759152
31
2.0
31
100
0
124
29
12
16
41
1.85
45765093--45765199
53
2.0
53
98
0
205
40
16
16
26
1.90
45768438--45768487
24
2.1
24
100
0
100
36
4
20
40
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45771354--45771395
22
1.9
22
90
0
66
23
21
9
45
1.81
45780519--45780569
24
2.1
24
85
3
66
58
11
11
17
1.62
45784104--45784236
66
2.0
66
97
0
248
34
14
12
38
1.84
45794603--45794713
55
2.0
54
96
1
204
29
10
25
34
1.90
45813996--45814048
25
2.0
28
82
10
67
33
1
20
43
1.63
45814138--45814362
48
4.7
48
74
4
193
28
18
28
23
1.98
45823876--45823918
21
2.0
21
91
8
70
39
18
4
37
1.72
45827493--45827563
27
2.7
27
93
2
117
64
7
2
25
1.32
45829753--45829807
6
8.5
6
79
15
56
74
0
25
0
0.82
45829752--45829827
34
2.3
32
90
4
116
69
1
27
1
1.04
45831667--45831839
46
3.7
46
78
10
199
23
21
26
28
1.99
45831664--45831834
93
1.8
93
93
0
297
22
21
27
28
1.99
45839195--45839370
46
3.8
46
75
12
189
21
21
28
28
1.98
45839192--45839363
93
1.8
93
93
0
299
21
21
29
27
1.99
45841718--45841759
14
3.0
14
83
13
59
45
2
0
52
1.13
45842246--45842299
26
2.1
26
93
3
92
37
3
31
27
1.75
45842420--45842461
21
2.0
22
85
4
59
7
33
0
59
1.25
45846942--45846970
9
3.0
10
90
10
51
0
10
0
89
0.48
45846944--45846969
9
2.9
9
100
0
52
0
7
0
92
0.39
45848026--45848521
47
10.4
47
94
3
834
28
30
7
33
1.85
45848026--45848521
143
3.5
143
95
2
856
28
30
7
33
1.85
45848026--45848521
190
2.6
191
94
2
876
28
30
7
33
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45848347--45848419
16
4.6
17
68
20
50
31
31
4
32
1.77
45851743--45851796
26
2.1
26
96
3
101
35
3
33
27
1.75
45851917--45851958
21
2.0
22
85
4
59
7
33
0
59
1.25
45852090--45852173
25
3.4
24
81
8
107
36
0
1
61
1.04
45852088--45852175
23
3.8
23
82
7
108
37
0
1
61
1.04
45852093--45852175
21
3.7
21
75
15
69
36
0
1
62
1.03
45855909--45855942
18
1.9
17
88
5
50
44
11
17
26
1.83
45862778--45862833
23
2.4
23
77
22
64
48
1
1
48
1.22
45862778--45862832
21
2.5
22
80
19
62
49
1
1
47
1.23
45867879--45867936
29
2.0
29
100
0
116
17
31
20
31
1.96
45871124--45871173
19
2.6
19
81
12
66
56
4
0
40
1.18
45876985--45877024
21
1.9
22
85
10
57
60
7
0
32
1.25
45876980--45877027
22
2.3
21
80
16
55
54
8
0
37
1.31
45885118--45885267
40
3.8
39
84
7
169
22
24
30
23
1.99
45897992--45898031
19
2.1
19
100
0
80
32
5
25
37
1.77
45900533--45900571
20
1.9
21
84
5
53
46
0
12
41
1.42
45901306--45901404
49
2.0
49
98
0
189
44
2
21
32
1.63
45903076--45903139
32
2.0
32
100
0
128
31
37
12
18
1.88
45908510--45908591
39
2.1
39
95
0
146
21
25
30
21
1.99
45915779--45915907
46
2.8
46
87
0
195
30
29
20
19
1.97
45918305--45918382
15
5.2
15
80
6
79
55
14
16
14
1.70
45918303--45918382
30
2.7
30
80
7
99
55
13
17
13
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45921283--45921411
46
2.8
46
91
2
206
28
28
22
20
1.98
45935170--45935293
46
2.7
46
87
0
185
23
20
25
30
1.98
45941890--45941959
28
2.5
28
92
0
113
28
31
14
25
1.95
45941947--45942083
40
3.4
40
82
2
150
35
25
15
24
1.94
45945921--45945974
20
2.6
21
82
11
67
35
0
7
57
1.27
45945964--45945991
11
2.5
11
100
0
56
28
0
0
71
0.86
45948125--45948674
46
12.0
46
92
1
854
37
15
24
22
1.93
45954550--45954641
38
2.3
40
81
9
109
42
3
6
47
1.45
45955205--45955270
32
2.0
33
88
2
98
40
7
0
51
1.30
45964418--45964458
19
2.2
19
90
0
64
51
0
9
39
1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352