Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  330  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106439941--106439973
14
2.4
14
94
0
57
18
12
6
63
1.48
106439838--106440330
92
5.3
90
74
11
318
27
16
17
39
1.90
106439796--106440130
183
1.8
179
83
6
433
28
17
18
35
1.93
106439775--106440390
88
6.7
89
74
14
336
28
16
17
37
1.91
106440043--106440232
102
1.8
103
88
4
294
27
15
17
39
1.90
106440170--106440397
87
2.6
86
81
4
235
31
15
19
33
1.93
106441031--106441055
12
2.1
12
100
0
50
16
52
8
24
1.70
106441528--106441573
25
1.9
24
91
8
76
34
2
0
63
1.07
106441528--106441733
23
8.6
25
71
13
85
32
6
4
56
1.44
106441620--106441725
25
4.0
28
68
20
77
29
6
4
59
1.43
106441670--106441736
25
2.9
22
78
10
71
29
5
5
58
1.46
106441800--106441855
25
2.3
24
79
14
62
37
16
3
42
1.65
106442685--106442761
3
26.0
3
75
12
61
68
2
3
24
1.19
106442706--106442744
20
1.9
20
89
5
60
74
5
0
20
1.01
106442703--106442760
23
2.5
24
83
16
77
70
3
1
24
1.12
106443084--106443143
10
6.0
10
81
11
70
20
8
3
68
1.30
106444117--106444170
12
5.0
12
78
19
57
59
0
11
29
1.32
106444132--106444165
9
3.7
9
84
7
50
61
0
8
29
1.26
106444130--106444178
22
2.2
22
85
7
64
65
2
8
24
1.31
106448550--106448620
11
6.5
11
76
12
58
66
2
1
29
1.15
106448546--106448606
21
2.9
20
72
18
52
70
1
0
27
0.97
106448549--106448606
15
3.6
16
78
21
59
70
1
0
27
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106449549--106449587
16
2.4
16
87
8
53
74
0
15
10
1.07
106449619--106449654
15
2.5
15
90
4
56
66
0
33
0
0.92
106457236--106457354
61
2.0
61
91
3
195
42
13
21
23
1.88
106459605--106459648
12
3.6
12
75
6
52
59
9
9
22
1.56
106459604--106459657
25
2.2
25
93
0
90
53
9
7
29
1.60
106460147--106460275
66
2.0
66
93
3
224
48
12
10
27
1.74
106460606--106460643
12
3.1
13
85
11
53
26
0
0
73
0.83
106462322--106462349
14
2.0
14
100
0
56
14
7
7
71
1.29
106463085--106463152
35
1.9
35
85
8
93
47
11
10
30
1.74
106469381--106469428
20
2.4
21
79
10
55
0
27
6
66
1.15
106469882--106469914
17
1.9
17
100
0
66
30
12
9
48
1.71
106474468--106474562
40
2.4
39
87
6
131
14
10
34
40
1.81
106482298--106482391
40
2.4
39
82
8
111
13
13
36
36
1.85
106483203--106483233
12
2.6
12
94
0
53
74
0
25
0
0.82
106484102--106484189
23
4.0
23
83
7
101
19
20
20
39
1.92
106486168--106486214
23
2.0
23
100
0
94
46
12
0
40
1.42
106489483--106489515
17
2.1
16
88
11
50
30
0
0
69
0.88
106489565--106489646
22
3.8
21
75
20
62
25
0
4
69
1.08
106489565--106489620
21
2.7
22
83
8
64
25
0
5
69
1.09
106489591--106489650
26
2.4
24
83
8
75
28
0
3
68
1.05
106490770--106490794
11
2.3
11
100
0
50
80
20
0
0
0.72
106491567--106491615
23
2.2
22
96
3
89
40
22
0
36
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106498126--106498154
5
5.8
5
100
0
58
82
0
0
17
0.66
106499567--106499608
21
2.1
21
82
8
52
54
4
2
38
1.34
106500150--106500188
18
2.0
20
90
9
64
64
2
0
33
1.08
106502504--106502542
20
2.0
20
90
5
62
25
7
5
61
1.44
106505556--106505610
15
3.8
16
69
26
50
65
0
3
30
1.10
106510661--106510727
29
2.3
28
82
7
80
68
0
4
26
1.08
106511633--106511672
18
2.2
18
100
0
80
45
5
27
22
1.73
106515916--106515940
13
1.9
13
100
0
50
84
0
0
16
0.63
106515924--106515977
23
2.3
25
81
12
78
72
0
11
16
1.12
106515942--106515977
18
1.9
19
94
5
65
69
0
13
16
1.19
106517040--106517167
44
2.9
44
82
2
141
30
23
15
30
1.95
106516958--106517386
183
2.4
182
89
1
653
27
23
17
31
1.97
106525129--106525176
25
1.9
25
87
8
71
66
4
2
27
1.21
106525197--106525264
25
2.8
24
81
16
77
57
1
4
36
1.28
106525197--106525277
25
3.4
23
77
15
76
56
2
4
35
1.34
106525233--106525281
22
2.3
21
86
13
66
55
4
4
36
1.38
106525254--106525312
26
2.3
25
80
8
66
59
1
6
32
1.34
106525360--106525429
25
2.8
24
76
6
77
58
5
4
31
1.41
106526415--106526458
18
2.4
19
84
3
63
70
0
15
13
1.17
106534673--106534780
26
4.2
26
97
0
207
30
6
26
36
1.82
106536254--106536306
26
2.0
26
85
7
72
39
22
13
24
1.90
106539785--106539858
5
14.8
5
81
16
64
20
0
5
74
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106540607--106540801
99
2.0
100
84
5
261
31
15
23
29
1.95
106541464--106541491
10
2.8
10
100
0
56
32
7
0
60
1.24
106546431--106546460
13
2.2
14
94
5
53
66
0
33
0
0.92
106546999--106547671
300
2.2
302
97
0
1287
33
2
12
52
1.51
106549566--106549622
20
2.9
21
89
10
93
28
3
5
63
1.33
106553486--106553518
17
1.9
17
93
0
57
15
33
6
45
1.70
106553599--106553630
3
11.0
3
93
6
57
68
0
0
31
0.90
106558766--106558809
22
2.0
22
83
12
56
56
6
6
29
1.51
106558930--106558982
20
2.7
18
81
16
61
64
1
1
32
1.15
106558935--106559096
13
12.8
13
64
24
55
60
0
4
34
1.21
106558931--106558989
20
3.1
20
71
26
56
64
1
3
30
1.20
106559008--106559099
8
11.9
8
68
24
56
61
0
3
34
1.12
106558923--106559035
18
6.0
19
70
19
78
61
0
4
33
1.22
106558950--106559079
47
2.7
47
74
14
122
60
0
4
34
1.17
106560863--106561615
206
3.7
206
89
4
1132
29
21
18
31
1.97
106573534--106573577
22
2.0
22
83
12
56
56
6
6
29
1.51
106579156--106579229
25
3.0
23
75
11
67
35
5
0
59
1.20
106579814--106579965
3
51.3
3
74
10
116
59
2
6
30
1.36
106580472--106580508
5
7.0
5
93
6
56
81
0
0
18
0.70
106580957--106581305
89
3.9
88
76
8
305
26
23
18
31
1.97
106580930--106581306
45
8.4
45
73
4
262
27
22
19
31
1.97
106580908--106581306
179
2.2
178
82
6
457
26
22
19
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106581341--106581526
89
2.1
88
81
5
214
25
20
23
30
1.99
106581476--106582587
132
8.4
132
84
2
1284
26
24
18
29
1.98
106581632--106581833
44
4.6
44
69
10
153
23
26
21
28
1.99
106582027--106582230
44
4.6
44
66
18
118
27
25
18
28
1.98
106581494--106582588
396
2.8
393
84
3
1437
26
24
19
29
1.98
106583356--106583417
30
2.1
30
96
0
115
32
17
9
40
1.82
106587526--106587573
23
2.1
21
81
14
51
52
2
4
41
1.32
106589569--106589841
89
3.1
89
66
17
242
26
23
17
32
1.96
106589363--106589975
176
3.5
176
89
0
877
26
24
17
30
1.97
106589782--106589883
43
2.3
44
79
12
111
27
23
18
30
1.98
106600662--106600695
11
3.0
11
83
8
50
35
2
8
52
1.47
106603493--106603537
10
4.4
10
77
5
54
22
24
22
31
1.99
106603481--106603529
20
2.4
20
86
3
62
20
26
22
30
1.98
106603559--106603591
12
2.8
12
86
4
50
36
3
9
51
1.49
106605628--106605685
29
2.0
30
83
10
75
58
0
5
36
1.20
106605738--106605785
23
2.1
23
84
7
62
56
2
4
37
1.30
106609090--106609128
15
2.6
14
84
8
51
56
0
15
28
1.40
106609133--106609173
19
2.1
19
90
4
64
70
0
4
24
1.06
106609269--106609420
3
51.3
3
72
7
78
59
3
8
28
1.45
106609399--106609426
12
2.3
12
100
0
56
67
0
0
32
0.91
106623854--106623896
21
2.0
21
100
0
86
23
18
13
44
1.86
106624435--106624475
21
2.0
21
85
0
55
26
14
7
51
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106636603--106636665
29
2.1
30
82
8
76
53
3
6
36
1.42
106637839--106637870
14
2.1
16
88
11
50
53
6
0
40
1.26
106645588--106645654
30
2.2
30
84
7
82
44
0
5
49
1.27
106645596--106645654
30
2.0
30
86
6
84
45
0
6
47
1.29
106645808--106645863
15
3.7
15
77
13
51
37
3
0
58
1.15
106648138--106648187
22
2.3
23
80
16
61
46
0
0
54
1.00
106651613--106651706
23
4.1
23
84
0
125
22
25
5
46
1.72
106654556--106654649
23
4.1
23
85
0
134
22
25
4
47
1.69
106656454--106656645
94
2.0
94
97
0
366
38
18
16
27
1.92
106658039--106658074
17
2.1
17
100
0
72
27
0
11
61
1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352