genome.fa.s11.2.7.7.80.10.50.1000.280.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  280  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91569788--91569830	4	10.2	4	92	7	68	25	2	2	69	1.12
91576082--91576134	23	2.3	23	93	3	90	13	1	45	39	1.54
91576155--91576200	10	4.6	10	89	10	76	21	8	0	69	1.15
91578976--91579059	31	2.7	31	92	1	143	27	26	17	28	1.98
91579083--91579174	42	2.2	42	96	0	166	32	19	15	32	1.93
91579295--91579366	25	2.9	24	81	4	72	27	22	20	29	1.99
91579311--91579391	25	3.2	26	84	6	78	24	23	22	29	1.99
91580201--91580262	27	2.3	27	80	5	72	20	22	19	37	1.95
91580320--91580405	27	3.1	27	80	11	102	36	9	15	39	1.79
91580383--91580533	27	5.6	27	82	4	171	27	7	22	41	1.81
91580317--91580485	54	3.1	54	76	5	142	33	10	17	39	1.83
91580410--91580566	54	2.9	54	80	3	174	28	11	21	38	1.88
91580384--91580533	81	1.9	81	87	2	221	28	8	22	42	1.81
91580408--91580573	27	6.1	27	76	10	115	28	11	22	37	1.89
91580565--91580751	81	2.3	81	86	1	250	41	6	20	30	1.79
91580565--91580762	27	7.3	27	82	2	209	41	7	21	29	1.81
91580609--91580782	81	2.1	81	84	2	215	39	8	21	31	1.82
91585727--91585874	43	3.4	43	94	0	260	29	31	26	12	1.92
91585879--91586056	38	4.7	38	91	4	272	29	25	23	21	1.99
91585879--91586056	75	2.3	75	90	3	277	29	25	23	21	1.99
91590218--91590255	19	2.1	18	85	9	51	39	0	5	55	1.23
91590252--91590295	20	2.2	20	83	0	52	72	2	9	15	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91591128--91591198	27	2.6	28	82	8	83	38	1	4	56	1.28
91591139--91591198	27	2.2	27	88	5	86	40	1	3	55	1.27
91593574--91593613	17	2.5	17	88	8	57	70	7	0	22	1.12
91594247--91594332	33	2.7	32	81	13	90	32	3	3	60	1.30
91596752--91596857	53	2.0	53	96	3	196	33	21	10	33	1.88
91607606--91607706	9	11.8	8	77	16	80	13	2	2	80	0.95
91607606--91607706	17	5.9	16	74	19	80	13	2	2	80	0.95
91607608--91607706	26	3.9	24	78	10	90	14	3	3	79	0.96
91607739--91607791	21	2.6	20	79	8	54	47	1	1	49	1.23
91607840--91607897	19	3.0	19	85	9	73	55	5	0	39	1.22
91607840--91607890	20	2.5	20	90	6	77	56	3	0	39	1.18
91607993--91608018	7	3.7	7	100	0	52	53	0	0	46	1.00
91608007--91608128	36	3.5	34	78	11	133	56	3	1	38	1.25
91608063--91608105	21	2.1	21	86	4	61	60	4	0	34	1.17
91607982--91608128	33	4.3	34	75	13	140	55	2	1	40	1.22
91608962--91609020	25	2.3	26	82	5	68	8	11	1	77	1.05
91610093--91610278	42	4.4	42	73	3	131	33	24	15	26	1.95
91614369--91614402	8	4.4	8	92	7	61	23	0	0	76	0.79
91614369--91614402	15	2.2	16	94	5	61	23	0	0	76	0.79
91614362--91614427	8	7.9	8	79	12	53	33	0	1	65	1.02
91614689--91614801	22	5.1	22	70	15	81	23	1	30	43	1.64
91615551--91615673	41	3.0	41	88	8	164	26	24	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91615702--91615729	12	2.3	12	100	0	56	46	32	14	7	1.71
91618403--91618446	21	2.1	21	100	0	88	56	4	6	31	1.46
91619285--91619317	17	2.0	17	88	5	50	39	6	15	39	1.72
91621054--91621208	79	2.0	80	82	6	190	25	27	20	25	1.99
91621007--91621210	40	5.1	40	77	8	202	25	26	21	25	2.00
91624389--91624440	26	2.0	26	100	0	104	46	11	15	26	1.80
91637303--91637459	40	4.0	40	96	0	280	22	19	29	28	1.98
91645233--91645390	40	4.0	40	97	0	289	22	20	29	27	1.98
91645248--91645416	80	2.1	80	87	0	239	22	21	28	26	1.99
91654598--91654819	94	2.4	95	84	2	279	28	17	29	24	1.97
91654612--91654819	47	4.4	46	72	8	150	26	17	30	25	1.97
91662506--91662687	95	1.9	93	79	8	197	42	8	6	42	1.60
91665911--91665964	11	5.0	11	86	4	74	18	46	5	29	1.72
91666501--91666558	18	3.2	18	90	0	89	36	17	10	36	1.84
91675593--91675644	24	2.2	24	89	0	77	55	9	1	32	1.43
91677561--91677612	24	2.2	24	89	0	77	55	9	1	32	1.43
91682105--91682150	23	2.0	23	100	0	92	47	17	4	30	1.67
91689029--91689058	15	2.0	15	100	0	60	6	13	20	60	1.55
91697406--91697447	19	2.3	19	95	4	77	38	14	9	38	1.78
91707203--91707237	15	2.3	16	85	14	56	80	0	0	20	0.72
91711110--91711332	40	5.6	40	88	5	301	26	26	22	24	2.00
91718368--91718591	40	5.6	40	90	5	321	25	27	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91721016--91721045	12	2.4	13	88	11	53	63	0	0	36	0.95
91722310--91722360	26	2.0	26	88	0	75	43	5	7	43	1.57
91722362--91722404	17	2.5	18	85	7	54	46	4	4	44	1.45
91727888--91727953	32	2.1	31	83	5	80	36	7	12	43	1.70
91733369--91733420	26	2.1	24	82	7	59	30	5	3	59	1.39
91741942--91741997	19	2.9	19	86	5	60	46	16	12	25	1.81
91741954--91741997	19	2.2	20	92	4	72	45	15	11	27	1.81
91749612--91749717	37	2.9	37	92	0	167	27	31	16	24	1.97
91749928--91750314	47	8.1	47	88	4	549	26	30	12	31	1.93
91749928--91750314	98	4.0	98	91	4	610	26	30	12	31	1.93
91749928--91750314	145	2.7	142	86	7	566	26	30	12	31	1.93
91752493--91752670	85	2.1	84	97	1	338	26	27	8	37	1.85
91754070--91754178	57	1.9	58	88	1	166	28	28	19	23	1.98
91754390--91754738	40	8.8	40	88	3	508	25	28	21	24	1.99
91755987--91756132	37	3.9	37	95	0	238	26	30	18	23	1.98
91756341--91756729	47	8.1	47	88	5	544	26	30	12	31	1.92
91756341--91756729	94	4.0	98	90	5	605	26	30	12	31	1.92
91758917--91759095	85	2.1	85	98	0	349	26	27	8	37	1.85
91761693--91761744	26	2.0	26	92	0	86	25	13	28	32	1.93
91761718--91761794	40	1.9	39	84	2	100	19	24	32	23	1.97
91763402--91763466	33	2.0	33	100	0	130	40	15	3	41	1.63
91763853--91764086	45	5.2	44	80	3	173	34	22	18	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91763948--91764086	46	3.1	45	82	4	163	33	23	18	24	1.97
91766173--91766462	40	7.5	40	81	10	327	25	27	22	24	2.00
91766173--91766462	80	3.7	78	86	7	364	25	27	22	24	2.00
91774279--91774576	40	7.5	40	83	6	338	25	26	23	24	2.00
91774314--91774576	120	2.2	120	88	4	379	26	25	23	24	2.00
91774279--91774576	80	3.7	80	86	4	372	25	26	23	24	2.00
91784726--91784760	18	2.0	18	94	5	63	17	28	40	14	1.88
91785641--91785696	28	2.0	29	82	10	71	42	5	10	41	1.62
91805932--91805984	26	2.0	26	100	0	106	24	30	18	26	1.98
91811485--91811569	43	2.0	43	92	0	143	56	11	9	22	1.63
91811638--91811672	18	1.9	18	100	0	70	57	17	0	25	1.40
91811636--91811674	18	2.2	18	90	0	69	56	20	0	23	1.42
91818291--91818355	35	1.9	33	82	14	80	61	3	0	35	1.12
91818815--91818853	19	2.1	18	86	13	53	30	0	2	66	1.05
91821157--91821226	18	3.8	19	81	9	83	65	0	1	32	1.01
91824076--91824115	3	13.3	3	100	0	80	67	0	0	32	0.91
91825827--91825864	12	3.2	12	85	7	51	50	2	0	47	1.15
91827901--91827979	29	2.7	29	86	5	106	27	32	15	24	1.95
91835993--91836071	29	2.7	29	82	5	97	27	31	15	25	1.95
91839169--91839195	14	1.9	14	100	0	54	40	0	29	29	1.57
91848771--91848833	27	2.3	27	88	0	90	22	0	41	36	1.54
91852183--91852244	32	2.1	31	85	14	87	58	0	1	40	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91852266--91852299	11	3.2	11	95	4	61	35	0	0	64	0.94
91853510--91853549	16	2.5	16	91	0	62	75	2	0	22	0.93
91857944--91858097	42	3.6	43	76	6	141	33	25	14	26	1.95
91859203--91859227	13	1.9	13	100	0	50	40	24	4	32	1.73
91865038--91865071	17	2.0	17	100	0	68	35	11	11	41	1.78
91869509--91869604	48	2.0	48	100	0	192	18	18	20	41	1.90
91872604--91872807	107	1.9	106	92	1	345	28	22	24	24	1.99
91873595--91873636	20	2.1	20	95	0	75	26	23	7	42	1.80
91879752--91879799	24	2.0	24	95	0	87	35	8	22	33	1.84
91884254--91884384	44	3.0	44	82	8	160	25	15	23	35	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352