genome.fa.s11.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  209  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68942913--68942977	28	2.3	28	91	0	103	32	27	9	30	1.88
68943083--68943183	27	3.6	28	80	6	107	21	26	20	30	1.98
68943083--68943197	55	2.1	56	82	8	137	20	25	20	33	1.97
68945159--68945245	38	2.3	38	95	0	165	26	16	26	31	1.96
68946722--68946925	40	5.1	40	82	7	227	26	27	21	24	1.99
68946708--68946925	79	2.7	81	78	11	227	27	27	20	25	1.99
68949108--68949332	40	5.6	40	85	4	292	24	24	28	23	2.00
68949108--68949368	80	3.3	79	82	6	287	24	23	27	24	2.00
68949108--68949368	120	2.2	120	84	8	329	24	23	27	24	2.00
68951687--68952058	202	1.8	202	85	3	525	26	20	28	23	1.99
68956815--68956939	38	3.3	38	97	0	241	28	15	25	31	1.95
68957534--68957758	40	5.6	40	86	2	299	24	24	28	22	2.00
68957534--68957794	80	3.3	80	84	4	323	24	24	27	23	2.00
68959363--68959396	10	3.3	10	84	8	50	29	8	8	52	1.62
68965821--68965882	28	2.2	28	88	0	88	33	25	9	30	1.88
68965990--68966050	28	2.2	28	88	2	88	16	24	24	34	1.95
68966000--68966052	27	1.9	27	88	3	79	18	26	20	33	1.96
68967616--68967659	10	4.1	10	78	16	52	54	31	2	11	1.48
68970024--68970052	15	2.0	15	93	6	51	48	6	17	27	1.72
68971998--68972084	27	3.2	27	88	0	120	28	14	18	37	1.91
68972038--68972421	27	14.3	27	77	5	271	29	9	21	38	1.86
68972038--68972432	81	4.9	80	79	3	355	29	10	21	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68972038--68972432	80	4.9	79	79	5	328	29	10	21	38	1.86
68972748--68972811	28	2.3	28	83	0	83	26	34	17	21	1.95
68973605--68973710	53	2.0	53	100	0	212	30	16	9	43	1.80
68973610--68973691	25	3.2	25	65	21	69	29	14	9	46	1.77
68974588--68974621	18	1.9	18	88	5	52	32	17	11	38	1.86
68975684--68975761	27	2.9	27	84	0	93	26	16	17	38	1.92
68975686--68975774	27	3.3	27	82	0	88	29	14	16	39	1.89
68975753--68976119	27	13.7	27	80	6	361	31	8	21	38	1.84
68975753--68976119	54	6.8	54	83	3	409	31	8	21	38	1.84
68975763--68976111	80	4.3	81	79	6	345	31	9	21	37	1.85
68987036--68987434	107	3.7	107	80	7	400	31	8	20	39	1.83
68987007--68987453	80	5.6	81	81	4	413	31	9	19	39	1.83
68987036--68987453	27	15.6	27	76	7	280	31	8	20	39	1.83
68987783--68987885	28	3.7	28	83	7	138	28	32	13	26	1.94
68991225--68991315	42	2.1	44	82	8	107	35	23	16	25	1.95
68991214--68991315	43	2.4	44	79	9	113	33	21	16	28	1.95
69000643--69000773	29	4.6	30	75	14	102	25	32	16	25	1.96
69000854--69000890	19	2.0	19	89	5	58	16	35	18	29	1.93
69000855--69000893	9	4.2	9	83	6	51	12	35	23	28	1.91
69008042--69008217	56	3.1	56	98	0	334	44	9	23	22	1.81
69009346--69009570	40	5.7	40	85	7	298	24	22	27	24	2.00
69009346--69009570	79	2.8	80	84	9	298	24	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69009346--69009603	119	2.2	119	82	8	303	25	22	27	24	2.00
69018556--69018722	40	4.2	40	80	3	149	25	26	23	24	2.00
69018578--69018722	40	3.6	40	83	2	175	23	25	24	26	2.00
69020516--69020691	46	3.8	46	79	5	203	21	20	28	28	1.98
69020512--69020683	93	1.8	93	92	2	292	21	20	29	27	1.98
69024192--69024457	93	2.9	93	89	0	379	24	19	27	28	1.98
69024206--69024464	46	5.6	46	73	8	193	25	18	26	30	1.98
69024246--69024411	47	3.6	47	75	8	185	25	18	25	30	1.98
69035309--69035542	27	8.7	27	79	4	222	32	20	23	24	1.98
69035309--69035528	107	2.0	108	83	4	275	33	19	23	24	1.97
69035309--69035542	80	2.9	80	82	3	247	32	20	23	24	1.98
69036756--69036797	22	1.9	22	85	9	59	38	4	19	38	1.73
69036752--69036804	22	2.3	23	78	18	58	33	9	18	37	1.83
69037479--69037661	80	2.3	80	87	1	260	21	21	27	28	1.99
69037479--69037661	40	4.6	40	82	4	208	21	21	27	28	1.99
69037479--69037696	80	2.7	79	83	4	235	22	21	27	28	1.99
69045783--69045961	40	4.5	40	95	1	297	20	24	29	25	1.99
69050231--69050397	27	6.2	27	86	1	192	32	18	23	25	1.97
69050833--69050906	33	2.2	33	92	0	121	28	24	22	24	2.00
69052215--69052348	56	2.4	56	93	0	223	29	14	21	33	1.94
69052215--69052379	56	2.9	56	88	1	179	27	14	23	33	1.94
69056286--69056488	40	5.1	40	84	4	137	27	27	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69056310--69056488	80	2.2	80	88	2	252	26	27	24	21	1.99
69064569--69064784	40	5.5	40	85	7	264	25	28	22	23	1.99
69064608--69064784	78	2.2	80	91	2	286	25	29	23	22	1.99
69066783--69066893	27	4.1	27	89	5	163	36	22	24	16	1.94
69067012--69067072	27	2.3	27	83	8	72	32	13	16	37	1.87
69074535--69074646	27	4.2	26	87	5	143	40	22	22	15	1.91
69083147--69083310	46	3.6	45	73	17	156	28	28	21	21	1.99
69083148--69083318	93	1.8	93	88	2	263	28	28	21	21	1.99
69088136--69088518	47	8.1	47	94	0	667	31	9	30	28	1.89
69088681--69088759	37	2.1	37	90	0	122	24	18	31	25	1.98
69094543--69094711	46	3.7	45	75	16	166	32	27	17	22	1.96
69094548--69094718	93	1.8	93	89	2	272	31	27	18	22	1.97
69097378--69097473	44	2.2	42	85	10	124	27	15	23	33	1.95
69097439--69097535	43	2.3	42	75	5	97	27	13	23	35	1.92
69100728--69100847	43	2.8	42	78	2	141	24	14	25	35	1.93
69100731--69100830	42	2.4	42	82	1	119	26	15	23	36	1.93
69113988--69114137	67	2.2	67	81	8	171	32	17	28	21	1.96
69114012--69114195	67	2.8	64	77	8	194	29	17	29	22	1.97
69120350--69120424	24	3.1	24	88	0	105	36	2	38	22	1.69
69121853--69121912	27	2.2	27	87	0	84	18	20	26	35	1.95
69123169--69123248	20	4.2	20	70	20	62	66	0	28	5	1.13
69123189--69123229	14	2.7	15	88	11	66	78	0	21	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69123189--69123229	5	8.2	5	89	10	66	78	0	21	0	0.76
69123192--69123221	9	3.2	9	95	4	51	80	0	20	0	0.72
69123192--69123229	19	2.0	20	94	5	69	78	0	21	0	0.74
69123163--69123266	57	1.9	53	84	9	138	68	0	27	3	1.07
69124188--69124233	19	2.5	19	86	6	60	43	8	0	47	1.34
69127830--69127882	13	3.9	13	80	7	52	73	0	26	0	0.83
69127836--69127910	23	3.2	23	81	5	71	66	1	30	1	1.08
69129741--69129918	27	6.6	26	80	7	169	29	28	15	26	1.96
69129762--69129917	82	1.9	81	88	3	233	29	28	15	26	1.96
69137488--69137662	27	6.6	27	83	5	196	29	28	15	26	1.96
69137488--69137662	55	3.3	53	82	6	203	29	28	15	26	1.96
69137506--69137661	82	1.9	81	88	3	233	29	28	15	26	1.96
69139883--69139926	19	2.4	18	85	7	54	40	9	0	50	1.34
69149074--69149258	79	2.3	80	81	7	198	25	27	22	24	2.00
69149055--69149258	40	5.1	40	81	8	211	25	27	22	25	2.00
69150386--69150561	56	3.1	56	99	0	343	22	22	9	45	1.80
69155332--69155393	30	2.1	30	100	0	124	48	6	9	35	1.62
69170431--69170455	13	1.9	13	100	0	50	40	4	16	40	1.67
69177735--69177792	24	2.4	25	78	16	68	31	18	22	27	1.97
69179321--69179475	43	3.6	42	75	14	113	23	14	27	33	1.94
69182592--69182689	34	2.9	33	76	11	110	27	21	23	27	1.99
69183045--69183074	15	2.0	15	93	0	51	50	0	10	40	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69186856--69186921	5	13.0	5	77	15	55	13	4	1	80	0.94
69186857--69186920	15	4.3	14	79	13	65	12	4	1	81	0.92
69186852--69186912	26	2.3	27	78	15	67	13	6	0	80	0.90
69186875--69186920	11	4.4	11	81	10	51	15	2	2	80	0.91
69186883--69186921	16	2.5	16	87	4	53	20	0	2	76	0.90
69187873--69188103	118	2.0	118	92	0	381	22	17	31	29	1.97
69188229--69188282	9	5.8	9	82	10	56	85	0	14	0	0.61
69188235--69188259	13	1.9	13	100	0	50	80	0	20	0	0.72
69188229--69188279	22	2.3	22	90	6	77	84	0	15	0	0.63
69197986--69198130	29	5.0	29	74	3	130	20	26	12	40	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352