genome.fa.s11.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  150  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49292623--49292941	96	3.4	96	88	4	432	20	23	14	41	1.89
49292655--49292935	142	2.0	138	85	5	377	20	23	14	41	1.89
49292671--49292950	92	3.0	92	88	3	391	21	23	14	40	1.90
49292671--49292950	46	6.0	46	84	5	346	21	23	14	40	1.90
49299283--49299311	7	4.3	7	95	4	51	44	0	27	27	1.54
49308918--49309046	46	2.8	46	100	0	258	19	21	29	29	1.98
49311947--49312015	15	4.7	15	78	12	81	11	18	11	57	1.63
49311938--49312020	28	2.9	28	80	10	87	12	16	14	56	1.67
49323267--49323427	43	3.7	43	77	7	139	32	25	19	22	1.97
49325063--49325185	48	2.6	48	79	10	128	25	26	18	30	1.98
49325097--49325293	48	4.1	49	76	7	174	25	24	20	28	1.99
49328301--49328452	40	3.8	40	84	1	153	25	27	23	23	2.00
49328324--49328467	40	3.6	39	85	3	171	23	25	24	26	2.00
49329658--49329733	38	2.0	38	100	0	152	31	23	13	31	1.93
49332401--49332484	44	1.9	44	92	0	141	20	19	8	52	1.71
49333299--49333360	28	2.2	29	88	2	90	25	14	30	29	1.95
49337807--49337891	29	3.0	29	87	1	118	27	15	29	28	1.96
49339007--49339040	18	1.9	18	88	5	52	41	11	17	29	1.85
49343021--49343145	23	5.3	23	80	12	121	24	22	17	35	1.95
49345224--49345259	16	2.2	16	90	0	54	47	22	22	8	1.77
49345479--49345557	28	2.8	28	80	3	97	26	16	30	26	1.97
49346359--49346482	41	3.0	41	100	0	248	29	8	24	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49347580--49347760	27	6.7	27	88	0	236	29	23	7	39	1.82
49347538--49347885	27	12.9	27	80	3	144	34	22	8	35	1.84
49347604--49347789	81	2.3	81	83	3	223	31	23	6	38	1.81
49347580--49347760	54	3.4	54	89	0	263	29	23	7	39	1.82
49347753--49347892	27	5.2	27	80	3	156	40	19	8	32	1.82
49347895--49348119	27	8.4	27	84	2	292	37	20	19	22	1.94
49347836--49348135	134	2.2	134	81	4	338	38	19	17	25	1.93
49348342--49348433	25	3.7	25	80	2	105	28	23	22	25	2.00
49351410--49351590	27	6.7	27	88	0	263	28	22	9	39	1.85
49351383--49351554	81	2.1	81	86	5	233	29	22	8	40	1.82
49351367--49351707	27	12.7	27	81	3	134	35	21	8	34	1.83
49351434--49351615	54	3.4	54	85	3	159	30	21	8	39	1.84
49351410--49351619	81	2.6	81	83	3	208	30	21	9	38	1.85
49351583--49351709	27	4.7	27	86	3	150	42	20	7	29	1.78
49351695--49351815	27	4.5	27	86	0	170	33	20	21	23	1.97
49351695--49351829	54	2.5	53	84	3	155	34	18	22	25	1.96
49354896--49354951	27	2.1	27	83	6	69	41	21	7	30	1.80
49354940--49355093	27	5.7	27	89	0	218	27	19	10	42	1.83
49354940--49355092	81	1.9	81	90	0	243	27	18	10	43	1.83
49355072--49355238	27	6.2	27	80	7	144	40	22	7	29	1.82
49354910--49355120	54	3.9	54	80	0	188	31	19	9	39	1.84
49354910--49355104	81	2.4	81	78	0	237	30	20	9	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49355072--49355238	81	2.1	81	80	4	194	40	22	7	29	1.82
49355086--49355237	54	2.8	55	86	3	193	42	21	7	28	1.80
49355225--49355444	27	8.1	27	86	0	278	37	19	18	25	1.94
49355225--49355439	81	2.7	81	88	0	313	37	18	19	24	1.94
49355675--49355740	25	2.7	25	90	2	98	25	28	22	22	1.99
49357666--49357922	23	11.2	23	82	6	290	23	19	25	31	1.98
49357677--49357922	69	3.6	69	87	3	370	23	19	26	30	1.98
49364083--49364360	23	12.1	23	83	5	312	23	19	25	32	1.98
49371663--49371817	42	3.7	42	85	3	177	29	23	18	29	1.97
49375270--49375416	43	3.4	43	78	5	154	29	14	23	31	1.95
49378183--49378429	79	3.1	80	84	5	297	23	23	27	25	2.00
49378183--49378406	119	1.9	120	87	2	335	22	23	28	25	2.00
49378183--49378429	40	6.2	40	87	3	304	23	23	27	25	2.00
49386279--49386501	40	5.6	40	87	5	276	22	22	28	25	1.99
49386278--49386501	79	2.8	79	84	4	283	23	22	28	25	1.99
49386319--49386524	79	2.6	79	83	7	258	23	22	28	25	1.99
49391013--49391087	26	2.8	25	76	9	78	25	22	16	36	1.94
49392594--49392652	29	2.0	29	100	0	118	33	20	18	27	1.96
49400124--49400231	26	4.2	26	93	0	189	36	24	7	32	1.83
49401311--49401340	6	5.0	6	100	0	60	16	0	0	83	0.65
49401361--49401404	22	1.9	24	90	9	74	0	13	15	70	1.17
49403068--49403107	21	1.9	21	89	0	62	25	7	17	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49408430--49408476	19	2.3	20	82	10	60	36	0	14	48	1.44
49408841--49409067	50	4.5	50	72	8	210	29	19	23	27	1.99
49409267--49409298	16	2.0	16	93	0	55	46	0	18	34	1.49
49419886--49419953	34	2.0	34	100	0	136	47	5	20	26	1.73
49420386--49420556	93	1.8	92	94	1	306	21	21	29	28	1.98
49420390--49420563	46	3.8	46	78	13	205	20	20	29	28	1.98
49427948--49428123	46	3.8	46	79	12	216	20	21	29	28	1.98
49427945--49428116	93	1.8	93	96	0	317	20	21	29	27	1.98
49434350--49434408	19	3.1	19	76	11	57	71	3	1	23	1.11
49438208--49438259	20	2.6	20	77	14	54	71	5	3	19	1.22
49443946--49444029	34	2.5	35	86	9	131	35	9	3	51	1.52
49448590--49448660	34	2.2	32	82	14	83	28	25	18	28	1.98
49448683--49448726	22	2.0	23	90	4	72	22	54	2	20	1.56
49451201--49451234	13	2.4	14	90	9	52	11	5	23	58	1.55
49452839--49452891	25	2.0	26	85	7	72	45	5	3	45	1.45
49457169--49457271	43	2.4	44	85	4	140	29	27	19	24	1.98
49457258--49457283	12	2.2	12	100	0	52	34	34	15	15	1.89
49457219--49457325	54	1.9	54	86	3	151	31	27	18	22	1.97
49463612--49463835	50	4.5	50	77	5	175	28	28	17	25	1.98
49466545--49466589	15	3.0	14	81	12	54	62	15	6	15	1.52
49475356--49475403	25	1.9	25	86	0	69	33	25	16	25	1.96
49475449--49475505	20	2.8	20	100	0	114	35	17	21	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49475556--49475795	24	10.0	24	91	1	374	29	20	21	28	1.98
49484708--49485076	85	4.3	84	80	5	346	31	24	20	22	1.98
49484708--49485076	43	8.6	42	77	5	280	31	24	20	22	1.98
49484708--49485032	128	2.5	128	77	6	370	32	24	20	21	1.98
49485377--49485421	21	2.1	21	91	0	72	2	53	15	28	1.54
49485976--49486013	19	2.1	18	85	9	51	52	0	7	39	1.31
49491560--49491599	21	1.9	21	89	0	62	47	15	7	30	1.72
49492020--49492059	21	1.9	21	89	0	62	47	15	7	30	1.72
49491201--49492439	460	2.7	461	96	0	2291	41	10	11	35	1.77
49494130--49494379	131	1.9	131	99	0	491	51	18	10	19	1.74
49497731--49497770	14	2.9	14	88	0	53	47	22	0	30	1.52
49497927--49498068	41	3.5	41	99	0	275	15	24	26	33	1.95
49508510--49508640	43	3.0	43	82	8	185	25	16	27	29	1.97
49511775--49512002	31	7.4	31	85	5	320	28	23	17	30	1.97
49511737--49512002	122	2.2	122	97	0	507	28	23	17	30	1.97
49512026--49512117	42	2.2	42	98	0	175	34	20	13	31	1.91
49512315--49512345	16	1.9	16	93	0	53	35	12	19	32	1.90
49513092--49513156	27	2.4	27	79	5	69	21	24	16	36	1.94
49513210--49513265	27	2.1	26	87	9	78	37	10	12	39	1.78
49513278--49513367	27	3.3	27	92	0	144	28	10	21	40	1.85
49513278--49513400	54	2.3	52	80	8	131	29	12	19	39	1.88
49513399--49513596	27	7.3	27	90	0	270	39	7	23	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49515318--49515406	34	2.6	34	86	10	128	24	25	23	25	2.00
49516616--49516740	6	20.3	6	70	16	87	48	12	19	20	1.81
49516637--49516740	31	3.4	31	73	15	106	46	12	21	20	1.83
49516625--49516731	37	2.9	37	83	4	135	47	12	20	19	1.81
49516673--49516740	25	2.7	25	88	0	100	45	13	20	20	1.84
49516858--49516938	27	3.0	26	87	5	99	37	22	23	17	1.94
49516988--49517025	20	1.9	20	94	0	67	42	31	15	10	1.81
49517025--49517087	22	2.9	22	83	9	83	34	20	23	20	1.96
49517601--49517789	27	7.0	27	86	1	236	23	21	19	35	1.96
49517615--49517796	54	3.4	54	92	0	292	24	20	18	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352