genome.fa.s11.2.7.7.80.10.50.1000.211.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  211  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69543793--69543871	40	2.0	40	100	0	158	58	10	10	21	1.60
69544213--69544385	48	3.6	48	80	7	199	29	19	27	23	1.98
69544810--69544857	24	2.0	24	95	0	87	22	29	31	16	1.96
69549288--69549427	42	3.3	42	73	0	136	32	17	23	25	1.97
69555628--69555660	15	2.2	15	94	0	57	45	6	15	33	1.70
69557514--69557556	19	2.2	20	84	16	54	39	4	2	53	1.34
69558058--69558131	24	3.2	24	71	21	86	55	4	10	29	1.53
69558044--69558131	44	2.0	44	100	0	176	56	4	9	29	1.50
69558897--69558977	18	4.3	20	75	16	75	23	30	4	40	1.76
69558895--69558977	38	2.2	37	81	8	96	22	30	4	42	1.74
69561041--69561151	27	4.1	27	82	5	136	19	22	20	36	1.95
69566294--69566505	40	5.3	40	84	5	286	24	20	28	26	1.99
69566298--69566505	80	2.6	80	93	0	346	23	21	28	26	1.99
69574384--69574595	40	5.3	41	83	5	265	25	19	27	27	1.99
69574384--69574576	80	2.4	80	94	0	341	24	20	28	26	1.99
69575633--69575774	55	2.6	55	81	6	144	19	28	25	26	1.98
69576678--69576721	21	2.1	21	100	0	88	36	29	4	29	1.77
69588120--69588289	46	3.7	46	73	14	152	28	29	20	22	1.98
69591439--69591521	34	2.5	35	78	13	93	25	21	22	30	1.99
69591234--69592039	407	2.0	408	88	1	1204	31	24	19	24	1.98
69600474--69600685	40	5.3	41	83	5	274	24	20	27	27	1.99
69600474--69600666	80	2.4	80	95	0	350	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69603010--69603077	34	2.0	34	82	5	84	27	20	23	27	1.99
69606245--69606371	56	2.3	56	90	0	191	25	15	25	33	1.95
69607751--69607791	18	2.3	18	91	4	66	43	0	14	41	1.45
69615813--69616072	27	9.9	27	80	10	247	29	11	20	38	1.87
69615813--69616072	53	4.9	53	81	8	282	29	11	20	38	1.87
69616389--69616452	28	2.3	28	91	0	101	26	37	17	18	1.93
69617926--69617974	24	2.0	24	88	0	71	30	18	28	22	1.97
69625025--69625178	25	6.4	24	87	5	204	28	22	20	28	1.98
69625010--69625178	49	3.5	49	84	7	204	28	22	20	28	1.98
69625032--69625177	23	6.1	23	86	7	202	29	21	20	28	1.98
69625224--69625294	20	3.5	20	88	0	106	32	21	11	35	1.89
69626641--69626692	27	1.9	27	88	7	79	34	11	13	40	1.81
69626714--69626784	25	2.8	25	80	6	81	33	8	16	40	1.79
69626714--69626778	27	2.5	26	82	5	78	30	7	18	43	1.78
69626805--69626837	17	2.0	17	88	5	50	39	3	21	36	1.69
69626831--69626968	27	5.2	27	85	4	183	39	5	23	31	1.78
69626831--69626968	54	2.6	54	90	3	210	39	5	23	31	1.78
69626838--69626990	27	6.0	25	83	3	130	38	6	22	32	1.80
69626831--69626990	81	2.1	79	85	7	220	38	6	23	31	1.80
69629477--69629693	25	9.0	24	91	4	296	27	23	20	28	1.99
69629739--69629789	20	2.5	20	90	0	84	31	21	9	37	1.86
69629826--69629873	25	1.9	25	91	0	78	25	14	25	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69631128--69631334	27	7.6	27	75	4	128	30	6	20	42	1.78
69631212--69631367	81	1.9	81	82	7	192	29	8	19	42	1.81
69631366--69631550	27	6.8	27	83	3	219	40	5	22	32	1.76
69631398--69631550	54	2.8	54	91	0	243	39	3	23	32	1.73
69631411--69631584	81	2.1	81	86	0	231	40	5	20	33	1.76
69636315--69636365	16	3.2	16	83	8	68	50	19	21	7	1.72
69636315--69636365	8	6.4	8	80	8	59	50	19	21	7	1.72
69636592--69636670	29	2.7	29	88	7	124	30	17	25	26	1.97
69637706--69637748	20	2.2	19	83	4	50	20	0	18	60	1.36
69649236--69649297	26	2.3	27	83	10	83	37	25	8	29	1.85
69649405--69649503	27	3.6	28	89	4	157	20	27	22	30	1.98
69656934--69657042	27	4.1	27	88	5	159	37	21	24	16	1.93
69657148--69657221	27	2.8	27	82	10	73	31	12	21	35	1.90
69660610--69660795	41	4.6	41	86	3	234	25	26	23	24	2.00
69663356--69663442	27	3.2	27	83	3	95	16	21	21	40	1.91
69666863--69666963	45	2.2	45	87	3	141	38	21	11	27	1.89
69670820--69670863	20	2.2	20	83	0	52	29	38	4	27	1.76
69670949--69671070	43	2.9	42	81	4	147	28	22	17	31	1.97
69678136--69678542	47	8.6	47	91	4	629	32	8	29	29	1.87
69678136--69678542	96	4.3	96	92	4	650	32	8	29	29	1.87
69682290--69682402	40	2.8	40	88	4	158	23	26	23	25	2.00
69686189--69686243	27	2.0	27	96	0	101	50	16	10	21	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69687239--69687386	40	3.7	40	87	3	226	24	26	23	25	2.00
69694385--69694533	40	3.7	40	94	3	273	25	27	21	25	1.99
69699892--69699970	40	2.0	40	92	0	131	26	25	24	24	2.00
69704360--69704403	20	2.2	20	87	0	61	31	31	4	31	1.78
69704498--69704601	41	2.5	41	79	3	100	29	23	17	29	1.97
69716314--69716630	47	6.7	47	95	0	528	32	8	30	28	1.87
69716749--69716826	37	2.1	37	88	2	113	24	17	32	25	1.97
69718040--69718385	79	4.4	80	91	3	551	24	21	28	25	1.99
69718040--69718385	39	8.8	40	91	3	551	24	21	28	25	1.99
69722076--69722733	47	13.7	47	85	9	791	31	8	30	29	1.87
69722076--69722733	141	4.6	141	90	6	1025	31	8	30	29	1.87
69722264--69722289	13	2.0	13	100	0	52	23	0	38	38	1.55
69722218--69722336	59	2.0	60	96	1	222	29	5	31	32	1.81
69722171--69722383	106	2.0	107	98	0	410	30	7	30	31	1.84
69722852--69722930	37	2.1	37	88	0	113	25	18	30	25	1.98
69726188--69726412	40	5.7	40	87	1	260	28	26	21	24	1.99
69726163--69726412	80	3.2	80	85	3	292	28	26	21	24	1.99
69734271--69734440	40	4.2	40	87	1	216	27	27	20	25	1.99
69738911--69738967	30	2.0	28	86	6	78	21	19	0	59	1.38
69740877--69741001	34	3.7	34	75	6	119	26	25	24	23	2.00
69747698--69747802	34	3.1	34	83	8	142	22	24	27	24	2.00
69748516--69748548	16	2.0	17	88	5	50	18	24	6	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69751704--69751847	67	2.1	67	98	0	279	15	20	15	49	1.80
69754187--69754241	18	2.9	19	70	5	58	21	10	3	63	1.42
69756779--69756825	19	2.5	19	82	3	60	14	8	4	72	1.24
69757656--69757924	45	6.0	45	99	0	529	26	20	15	37	1.92
69758034--69758065	16	2.0	16	100	0	64	50	25	12	12	1.75
69768669--69768779	25	4.5	25	83	13	149	48	14	18	18	1.81
69768664--69768734	6	11.7	6	88	8	108	49	15	18	16	1.80
69768909--69768975	27	2.5	28	78	11	68	34	16	23	25	1.95
69769005--69769170	78	2.1	78	89	0	251	33	30	18	18	1.95
69769176--69769282	27	4.0	27	79	3	92	37	19	20	22	1.94
69769196--69769285	28	3.3	28	81	4	112	37	22	20	20	1.94
69769510--69769842	27	12.3	27	82	5	327	23	20	18	37	1.94
69769510--69769840	54	6.1	54	80	2	387	23	20	19	36	1.95
69769509--69769840	81	4.1	81	83	4	409	23	20	18	37	1.94
69769824--69770084	27	9.7	27	77	4	197	29	7	22	39	1.82
69769509--69769840	108	3.1	107	85	4	452	23	20	18	37	1.94
69769704--69769870	81	2.1	81	79	6	178	26	19	18	35	1.95
69772049--69772154	6	17.3	6	70	14	65	50	12	16	20	1.78
69772088--69772154	25	2.7	25	85	0	89	49	13	17	19	1.80
69772272--69772337	27	2.5	26	87	7	96	37	21	22	18	1.94
69772272--69772352	27	3.0	27	82	8	94	38	22	22	17	1.93
69772374--69772539	78	2.1	78	85	2	226	34	28	18	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69772546--69772598	27	2.0	27	84	0	70	37	18	22	20	1.94
69772591--69772654	28	2.3	27	86	5	92	35	21	23	18	1.95
69772880--69773203	27	12.0	27	86	3	393	25	21	16	36	1.94
69773249--69773418	27	6.3	27	86	2	209	30	8	21	40	1.83
69773276--69773443	54	3.1	53	81	3	192	32	7	18	41	1.79
69777649--69777760	43	2.6	42	77	5	118	29	22	16	31	1.96
69779190--69779237	13	3.6	13	75	5	51	2	31	0	66	1.03
69780292--69780353	26	2.3	26	89	8	90	40	25	6	27	1.80
69780457--69780534	27	2.9	27	90	5	115	20	25	16	37	1.93
69785076--69785154	32	2.5	32	93	0	131	25	20	29	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352