Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  293  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96355117--96355164
21
2.3
21
81
0
60
18
27
27
27
1.98
96361180--96361210
14
2.2
14
100
0
62
19
16
6
58
1.59
96380155--96380232
40
2.0
40
87
5
113
34
30
14
20
1.92
96382253--96382326
36
2.1
36
97
0
139
32
12
28
27
1.92
96390468--96390628
79
2.0
79
100
0
322
27
19
19
33
1.96
96393862--96393997
51
2.7
51
83
0
182
39
5
11
42
1.66
96393894--96393971
19
4.4
19
71
21
62
39
6
11
42
1.67
96413899--96413960
19
3.4
18
74
12
56
51
8
3
37
1.48
96413897--96413959
16
3.8
16
70
13
56
49
9
3
38
1.51
96418401--96418452
24
2.2
24
85
0
68
53
9
3
32
1.51
96427715--96427850
53
2.6
52
83
8
168
31
16
25
25
1.97
96429926--96429955
11
2.7
11
94
0
51
23
16
36
23
1.94
96429965--96430043
33
2.4
31
82
14
88
32
17
24
25
1.97
96430019--96430091
33
2.2
33
78
9
78
31
15
27
26
1.95
96432771--96432822
24
2.2
24
89
0
77
53
7
3
34
1.48
96434783--96434982
42
4.7
41
74
5
166
27
23
19
30
1.98
96451188--96451279
43
2.1
43
84
7
116
31
4
2
61
1.27
96451220--96451345
52
2.4
53
95
1
227
30
1
2
65
1.15
96452274--96452298
7
3.6
7
100
0
50
28
0
12
60
1.32
96456421--96456921
127
4.0
126
83
5
615
28
16
15
39
1.90
96456456--96456921
248
1.9
247
89
2
729
27
16
15
40
1.88
96457051--96457444
52
7.3
50
65
21
138
45
16
1
37
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96457093--96457135
22
2.0
22
95
0
77
37
16
0
46
1.47
96457006--96457500
108
4.6
108
83
5
611
44
16
1
37
1.57
96457062--96457492
219
2.0
218
88
2
641
45
16
1
36
1.57
96457289--96457364
22
3.5
22
83
0
89
43
17
1
38
1.57
96457342--96457410
34
2.0
34
83
5
86
44
20
0
34
1.52
96457385--96457434
22
2.3
22
89
3
75
50
20
0
30
1.49
96457396--96457465
22
3.2
22
81
2
70
44
17
1
37
1.57
96457450--96457533
34
2.5
34
98
0
159
41
14
2
41
1.58
96457652--96457735
35
2.4
36
86
6
118
46
23
1
28
1.60
96458231--96458271
18
2.2
20
86
8
59
56
0
0
43
0.99
96458376--96458529
80
1.9
80
83
6
197
36
8
18
37
1.81
96460043--96460074
11
2.8
12
86
13
50
34
0
0
65
0.93
96460200--96460262
30
2.1
30
93
0
108
58
12
1
26
1.43
96460291--96460339
22
2.2
22
77
0
53
59
4
12
24
1.50
96461256--96461323
25
2.8
24
71
4
57
66
8
2
22
1.33
96461345--96461405
21
3.0
21
80
2
61
75
9
6
8
1.19
96475544--96475589
24
1.9
24
86
0
65
21
21
10
45
1.82
96484736--96484774
18
2.1
19
85
4
53
30
2
7
58
1.39
96485953--96486043
40
2.3
39
88
3
119
45
7
21
25
1.78
96487194--96487230
14
2.6
15
83
12
51
56
0
5
37
1.22
96494483--96494519
14
2.6
15
83
12
51
56
0
5
37
1.22
96498446--96498497
25
2.1
25
85
0
68
36
9
15
38
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96501959--96502161
99
2.1
99
99
0
399
36
21
5
35
1.78
96502124--96502225
49
2.1
49
100
0
204
46
16
5
31
1.71
96502201--96502260
29
2.1
29
100
0
120
45
15
6
33
1.72
96502491--96502534
19
2.2
20
80
19
56
63
2
0
34
1.07
96506321--96506429
53
2.1
53
100
0
218
40
23
3
32
1.72
96507784--96507856
17
3.9
18
75
16
69
26
8
4
61
1.42
96507767--96507856
20
4.6
20
70
16
71
24
8
3
63
1.39
96507767--96507856
40
2.3
40
80
16
107
24
8
3
63
1.39
96507912--96507971
3
19.7
3
76
10
59
35
6
0
58
1.24
96508081--96508145
23
2.9
23
73
15
64
32
3
12
52
1.54
96508240--96508301
16
4.1
16
74
15
51
29
14
0
56
1.39
96508442--96508518
13
6.0
12
78
13
64
36
1
3
58
1.25
96508442--96508508
28
2.5
27
79
11
75
35
1
2
59
1.22
96508505--96508548
23
2.0
22
90
4
70
36
4
4
54
1.41
96513299--96513378
39
2.1
38
97
2
151
46
16
16
21
1.84
96520825--96520924
43
2.3
42
86
3
128
36
21
22
21
1.96
96522625--96522697
17
3.9
18
75
16
69
26
8
4
61
1.42
96522608--96522697
20
4.6
20
70
16
71
24
8
3
63
1.39
96522608--96522697
40
2.3
40
80
16
107
24
8
3
63
1.39
96522765--96522798
15
2.3
15
90
10
52
29
8
0
61
1.26
96522899--96522932
3
10.7
3
87
12
50
38
0
0
61
0.96
96522899--96522932
16
2.1
16
100
0
68
38
0
0
61
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96522899--96522935
13
2.8
13
92
8
58
40
0
0
59
0.97
96522919--96522991
22
3.3
21
78
16
69
34
2
9
53
1.48
96523235--96523295
31
2.0
31
83
6
79
39
6
3
50
1.45
96523284--96523321
13
2.9
13
85
11
51
42
2
2
52
1.29
96523322--96523357
14
2.6
14
95
0
63
36
0
0
63
0.94
96523365--96523406
20
2.2
19
91
4
66
38
4
4
52
1.44
96523477--96523506
14
2.1
15
93
6
53
13
13
10
63
1.52
96525258--96525324
14
4.6
14
75
10
62
32
8
2
55
1.46
96525259--96525323
31
2.1
31
100
0
130
32
9
3
55
1.47
96525259--96525308
17
3.1
17
75
8
52
30
10
2
58
1.42
96530623--96530743
44
2.9
41
79
7
125
27
25
20
26
1.99
96534250--96534290
21
2.0
21
81
18
50
21
26
19
31
1.97
96546799--96546832
16
2.1
16
100
0
68
52
5
23
17
1.66
96547145--96547200
16
3.5
16
88
7
87
35
7
28
28
1.84
96547182--96547275
44
2.1
44
86
7
127
34
4
25
36
1.76
96547447--96547479
17
1.9
17
100
0
66
63
0
0
36
0.95
96547441--96547494
17
2.7
21
72
27
62
55
1
0
42
1.10
96552297--96552330
16
2.1
17
94
5
61
23
20
8
47
1.78
96557459--96558082
120
5.2
120
97
1
1160
43
2
5
47
1.40
96557790--96557824
18
2.0
17
88
5
52
45
0
0
54
0.99
96558031--96558065
18
2.0
17
88
5
52
45
0
0
54
0.99
96558230--96558320
45
2.0
45
85
2
121
37
28
6
27
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96558301--96558369
16
4.2
16
92
3
120
36
37
1
24
1.65
96558301--96558369
33
2.1
32
94
2
120
36
37
1
24
1.65
96562622--96562901
41
6.8
41
91
5
390
27
19
24
28
1.99
96570286--96570565
41
6.8
41
91
5
390
27
19
24
28
1.99
96578407--96578440
17
1.9
18
88
5
52
55
0
5
38
1.24
96579150--96579190
19
2.1
20
86
4
57
63
2
0
34
1.08
96600805--96600956
80
1.9
79
91
1
250
28
11
26
32
1.92
96603055--96603100
17
2.7
17
87
12
60
65
2
6
26
1.28
96604387--96604463
25
2.9
26
79
9
66
33
0
2
63
1.08
96604431--96604482
18
2.9
18
77
8
52
30
1
3
63
1.23
96605158--96605191
6
5.7
6
89
0
50
20
0
14
64
1.28
96606798--96606830
11
2.8
12
86
13
50
63
9
0
27
1.24
96606895--96606933
10
3.9
10
89
0
60
71
2
0
25
0.98
96627131--96627208
38
2.1
38
100
0
156
37
29
10
23
1.88
96633473--96633855
47
8.1
47
91
2
550
32
11
29
26
1.91
96633619--96633743
25
5.2
25
61
24
72
28
11
32
28
1.91
96633829--96633965
46
3.0
46
90
0
202
34
9
31
24
1.88
96634139--96634220
37
2.2
37
86
0
110
21
17
32
28
1.96
96644439--96644477
18
2.1
19
85
4
53
30
23
0
46
1.53
96644767--96644813
24
2.0
24
91
4
78
48
36
4
10
1.57
96645299--96645555
46
5.6
46
88
2
327
22
22
13
42
1.88
96645287--96645600
46
6.8
46
85
2
209
21
22
14
40
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96645625--96645765
33
4.3
33
74
13
119
21
25
21
31
1.98
96648749--96648817
29
2.3
30
77
7
77
34
15
2
46
1.61
96649115--96649724
37
16.8
37
78
7
576
34
20
14
30
1.92
96649115--96649724
73
8.4
72
76
10
498
34
20
14
30
1.92
96649116--96649719
110
5.6
108
78
9
543
34
20
14
30
1.93
96649445--96649505
28
2.2
28
82
2
79
32
19
19
27
1.96
96649408--96649543
64
2.1
64
86
5
195
37
19
16
27
1.92
96650300--96650333
12
2.9
12
95
4
61
35
0
0
64
0.94
96650333--96650368
18
1.9
18
88
5
54
72
8
0
19
1.10
96650548--96650590
22
2.0
22
90
0
68
60
11
9
18
1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352