Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  340  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108970381--108970487
30
3.6
30
85
0
124
28
20
24
27
1.99
108970832--108970871
10
4.0
10
81
12
55
22
7
2
67
1.28
108979384--108979418
14
2.4
14
90
4
52
71
0
0
28
0.86
108979562--108979617
21
2.7
21
81
10
69
30
1
0
67
1.01
108979569--108979596
14
2.0
14
100
0
56
28
0
0
71
0.86
108979998--108980056
27
2.1
27
84
6
73
35
11
3
49
1.56
108980243--108980290
25
1.9
25
91
8
80
27
8
8
56
1.57
108986508--108986571
32
2.0
32
96
0
119
29
21
14
34
1.93
108995617--108995657
21
2.0
21
90
0
64
29
21
29
19
1.98
109000901--109000948
19
2.6
19
78
18
57
60
0
2
37
1.09
109004583--109004626
16
2.8
16
93
6
72
36
0
2
61
1.09
109004583--109004631
16
3.1
15
88
11
71
32
2
2
63
1.17
109012662--109012701
21
1.9
21
84
0
53
37
2
22
37
1.68
109016433--109016611
44
4.1
44
76
8
177
30
15
25
29
1.96
109016459--109016655
88
2.2
89
75
12
192
30
15
25
28
1.96
109016670--109017096
206
2.1
207
91
2
689
32
19
21
26
1.97
109018793--109018833
16
2.5
17
84
11
59
36
2
2
58
1.24
109028804--109028837
13
2.6
13
86
13
52
61
0
0
38
0.96
109028804--109028854
26
2.0
25
85
14
68
56
3
0
39
1.18
109029006--109029099
44
2.1
44
86
2
125
30
9
5
54
1.55
109029291--109029317
1
27.0
1
100
0
54
0
0
0
100
0.00
109034046--109034097
23
2.2
24
80
10
63
59
3
0
36
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109034110--109034139
9
3.4
9
95
4
53
60
0
0
40
0.97
109040963--109041026
9
6.8
9
74
15
58
57
0
0
42
0.98
109040951--109041025
37
2.0
38
89
7
118
61
0
0
38
0.96
109040951--109041007
19
3.2
18
76
16
64
63
0
0
36
0.95
109047069--109047107
19
2.1
19
100
0
78
51
0
20
28
1.48
109047880--109048003
62
2.0
62
98
0
239
22
28
8
41
1.82
109052164--109052218
28
2.0
28
82
3
67
67
3
3
25
1.23
109052261--109052308
20
2.4
21
82
10
64
68
6
0
25
1.12
109054155--109054191
6
6.2
6
93
0
56
45
0
54
0
1.00
109054445--109054489
20
2.3
20
88
3
74
26
4
2
66
1.22
109055063--109055166
45
2.2
48
86
5
142
17
1
31
49
1.58
109055193--109055424
41
5.8
41
81
6
260
21
23
20
34
1.96
109055193--109055437
81
3.0
81
82
7
225
21
22
20
36
1.95
109059136--109059176
16
2.6
16
92
0
64
48
0
0
51
1.00
109059257--109059294
19
2.0
19
94
0
67
47
13
10
28
1.76
109060498--109060590
41
2.3
41
87
3
127
62
0
0
37
0.96
109065636--109065717
39
2.1
39
90
0
128
28
13
24
34
1.93
109082289--109082367
30
2.6
30
91
0
122
32
20
17
29
1.95
109082497--109082538
22
1.9
22
85
0
57
61
2
0
35
1.09
109084117--109084196
40
2.0
40
95
0
142
28
6
16
48
1.70
109093887--109093941
24
2.3
24
84
6
67
41
7
0
50
1.30
109094044--109094104
33
1.9
33
84
15
85
31
3
3
62
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109094140--109094200
21
3.0
20
80
7
77
31
4
1
62
1.26
109094154--109094214
19
3.3
19
72
17
56
26
4
3
65
1.28
109094236--109094284
23
2.0
25
84
7
66
34
8
0
57
1.29
109099732--109099807
13
5.8
13
79
13
75
81
0
13
5
0.85
109099751--109099802
16
3.2
16
75
22
54
82
0
9
7
0.84
109099751--109099809
16
3.7
16
71
22
52
83
0
10
6
0.82
109100711--109101230
88
5.9
87
73
10
362
31
16
24
26
1.97
109100699--109101238
132
4.1
132
93
0
900
31
17
24
27
1.97
109101219--109101325
44
2.4
45
84
3
135
29
15
27
27
1.96
109101303--109101921
205
3.0
204
92
1
1001
30
19
22
28
1.98
109103526--109103591
24
2.8
24
77
9
64
40
7
1
50
1.40
109103685--109103718
16
2.1
16
94
0
59
29
2
0
67
1.05
109103695--109103755
33
1.9
33
84
15
85
31
3
3
62
1.27
109103796--109103852
10
5.6
10
72
4
51
29
3
1
64
1.20
109103791--109103850
21
2.9
20
80
7
75
31
5
1
61
1.27
109103886--109103934
23
2.0
25
88
7
75
34
6
0
59
1.22
109106844--109106917
37
2.0
37
100
0
148
40
10
13
35
1.80
109109344--109109411
30
2.3
30
94
0
118
26
5
10
57
1.55
109110434--109110487
23
2.3
24
84
9
67
46
5
0
48
1.25
109110434--109110494
24
2.5
24
78
14
63
45
4
0
49
1.23
109113148--109113178
14
2.1
15
94
5
55
48
0
25
25
1.52
109116435--109116494
31
1.9
31
100
0
120
33
31
3
31
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109120795--109120874
25
3.2
25
89
0
115
36
7
15
41
1.75
109125389--109125468
25
3.2
25
87
0
115
38
7
12
41
1.71
109125677--109126189
153
3.4
152
86
3
701
27
20
15
36
1.92
109128057--109128180
41
3.0
41
86
5
155
33
23
23
19
1.97
109128239--109128272
16
2.1
17
88
5
52
50
32
0
17
1.47
109128425--109128475
15
3.5
15
75
2
50
23
1
27
47
1.63
109129088--109129359
104
2.6
102
94
2
474
57
7
11
23
1.59
109129281--109129318
18
2.1
19
85
5
51
76
0
5
18
0.97
109135631--109135673
21
2.0
21
86
0
59
20
9
13
55
1.66
109139368--109139411
22
2.0
22
100
0
88
45
31
9
13
1.75
109141282--109141365
18
4.9
18
76
12
79
29
3
1
65
1.17
109141312--109141363
3
17.3
3
84
7
70
30
1
1
65
1.14
109142706--109142748
21
2.0
21
100
0
86
41
9
13
34
1.77
109148774--109149473
133
5.3
133
91
0
1096
26
18
26
28
1.98
109149201--109149385
45
4.2
45
66
13
112
28
18
27
26
1.98
109149371--109149544
87
2.0
88
97
1
332
27
18
25
28
1.98
109156739--109156790
21
2.5
21
80
0
59
61
5
3
28
1.37
109157308--109157355
25
2.0
26
84
12
66
52
6
8
33
1.57
109161421--109161495
18
4.2
18
84
0
105
32
21
13
33
1.92
109174351--109174432
21
3.9
21
77
4
76
34
24
24
17
1.96
109174626--109174744
51
2.3
53
78
12
131
43
33
5
17
1.71
109174596--109174708
23
4.7
23
75
15
77
44
38
3
14
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109177893--109177970
40
2.0
40
100
0
156
37
19
20
23
1.95
109183094--109183151
27
2.1
27
100
0
116
22
8
39
29
1.84
109189806--109189888
40
2.1
40
90
4
132
24
22
19
33
1.97
109192745--109192827
40
2.1
40
91
8
134
24
22
19
33
1.97
109193098--109193392
153
1.9
153
82
4
371
23
21
16
39
1.92
109197249--109197303
20
2.7
21
83
11
60
40
5
0
54
1.23
109201640--109201683
22
2.0
22
82
13
54
50
13
9
27
1.72
109201583--109201786
100
2.1
99
85
4
277
48
10
7
33
1.66
109212257--109212387
35
3.6
35
75
18
117
32
11
23
32
1.90
109212831--109212860
15
2.0
15
93
0
51
50
0
10
40
1.36
109212827--109212889
27
2.3
26
76
10
63
38
0
11
50
1.38
109216590--109216640
5
10.4
5
78
18
54
17
1
1
78
0.94
109216590--109216647
10
5.2
11
78
14
57
18
1
1
77
0.94
109216591--109216650
18
3.5
18
80
8
63
20
1
1
76
0.96
109218162--109218191
15
2.0
15
93
0
51
50
0
10
40
1.36
109225714--109226026
155
2.0
155
98
0
608
31
17
20
31
1.95
109230682--109230812
44
3.0
44
74
6
131
26
28
16
29
1.97
109231198--109231372
89
2.0
89
91
2
289
24
18
21
34
1.96
109231529--109232282
44
16.4
44
71
14
409
28
21
17
32
1.96
109231426--109232282
138
6.2
138
93
0
1462
28
21
17
32
1.96
109231426--109232282
277
3.1
277
95
0
1518
28
21
17
32
1.96
109231429--109232282
415
2.1
415
94
0
1476
28
21
17
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109232213--109232374
48
3.5
46
73
7
125
25
23
20
30
1.99
109232677--109232860
45
4.1
45
65
11
103
27
26
19
27
1.99
109232474--109233003
133
4.0
133
92
0
812
28
25
18
27
1.98
109237912--109237966
26
2.1
26
93
0
92
32
5
25
36
1.79
109255117--109255147
9
3.3
9
91
8
53
22
0
0
77
0.77
109259572--109259602
9
3.3
9
91
8
53
19
3
0
77
0.90
109260865--109260919
26
2.1
26
83
6
67
25
12
21
40
1.89
109262407--109262514
26
4.2
26
90
0
171
37
25
6
31
1.81
109267051--109267105
22
2.3
22
78
12
56
56
0
7
36
1.27
109267279--109267335
25
2.4
24
86
13
82
54
0
3
42
1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352