genome.fa.s11.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  145  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47484897--47484926	16	1.9	16	93	6	53	73	0	0	26	0.84
47487287--47487351	31	2.1	31	85	0	85	52	10	13	23	1.72
47488084--47488116	11	2.9	12	86	13	52	33	0	0	66	0.92
47488118--47488157	18	2.2	18	86	8	55	67	12	0	20	1.22
47488239--47488301	30	2.1	30	96	0	117	57	12	3	26	1.51
47492854--47492922	27	2.4	27	77	15	68	18	5	36	39	1.75
47492911--47492955	23	2.0	23	87	8	67	11	4	42	42	1.60
47498466--47498510	23	2.0	23	87	8	67	11	4	42	42	1.60
47501804--47501931	33	3.9	32	70	7	87	25	26	17	30	1.97
47501870--47502063	105	1.9	101	84	6	255	28	24	14	31	1.95
47506929--47507012	41	2.0	41	93	0	141	27	23	16	32	1.96
47510437--47510548	57	2.0	57	89	3	172	24	13	22	40	1.89
47513007--47513068	21	2.9	22	74	13	65	14	40	22	22	1.90
47517348--47517840	27	18.4	27	76	7	342	40	18	9	31	1.82
47517348--47517840	81	6.1	80	81	6	462	40	18	9	31	1.82
47532323--47532384	30	2.1	30	93	0	106	35	25	14	24	1.93
47533869--47533917	20	2.5	20	80	6	55	24	2	2	71	1.07
47539986--47540146	42	3.8	42	75	4	135	27	23	19	29	1.98
47539986--47540142	85	1.9	84	82	4	199	26	23	19	29	1.98
47542405--47542584	89	2.0	89	89	2	272	28	15	17	38	1.91
47546007--47546116	46	2.5	44	85	8	134	23	29	20	27	1.99
47552216--47552286	33	2.2	33	100	0	142	36	5	14	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47553323--47553371	23	2.1	23	100	0	98	20	8	12	59	1.58
47555847--47555923	28	2.8	28	95	0	145	38	23	7	29	1.83
47556045--47556136	28	3.2	27	86	9	121	21	23	22	31	1.98
47556045--47556161	56	2.1	56	81	10	132	20	23	21	34	1.97
47571354--47571521	46	3.6	46	75	16	175	29	29	20	20	1.98
47571355--47571525	93	1.8	93	92	0	288	29	29	19	21	1.98
47573888--47573976	30	3.0	30	80	8	101	57	15	16	10	1.65
47573888--47573967	15	5.4	15	80	7	92	58	13	17	10	1.62
47573899--47573976	15	5.2	15	78	9	79	56	15	16	11	1.67
47583531--47583565	18	2.1	17	89	10	54	51	11	0	37	1.38
47592837--47592861	13	1.9	13	100	0	50	40	24	4	32	1.73
47597907--47598040	61	2.2	61	80	7	155	52	6	6	33	1.54
47598416--47598450	15	2.3	15	95	0	61	65	5	0	28	1.15
47598416--47598460	15	3.1	15	87	3	56	62	8	2	26	1.37
47606590--47606736	43	3.4	43	87	2	208	29	32	23	13	1.93
47606708--47606791	38	2.2	38	82	0	105	32	26	21	20	1.98
47609435--47609465	16	1.9	16	93	0	53	16	29	0	54	1.42
47610342--47610442	50	2.0	50	100	0	202	35	9	15	38	1.81
47611451--47611654	53	3.8	53	72	3	129	37	18	22	21	1.94
47618236--47618419	40	4.6	40	85	2	253	24	26	23	25	2.00
47626205--47626423	40	5.6	40	81	7	252	25	26	22	25	2.00
47629046--47629252	53	3.8	53	76	3	198	38	17	24	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47630552--47630606	25	2.3	23	78	12	58	43	3	16	36	1.65
47630679--47630731	25	2.1	26	86	10	74	56	7	3	32	1.45
47630671--47630737	22	2.8	24	82	6	75	58	5	5	29	1.46
47630753--47630880	23	5.5	24	72	14	99	56	3	5	35	1.38
47631152--47631190	16	2.4	16	86	0	51	43	28	5	23	1.75
47631349--47631476	30	4.3	30	93	0	211	19	6	49	25	1.71
47632109--47632270	87	1.9	88	83	6	213	39	17	12	30	1.87
47632488--47632520	14	2.4	14	94	0	57	63	6	12	18	1.48
47632275--47632685	91	4.6	88	82	6	407	37	17	17	28	1.92
47632275--47632685	183	2.3	177	81	9	456	37	17	17	28	1.92
47632597--47633200	73	8.2	75	84	5	723	34	20	15	29	1.93
47632591--47633180	222	2.7	220	91	2	918	33	20	16	30	1.94
47632591--47633267	147	4.5	147	87	4	799	34	20	15	29	1.94
47633370--47633414	14	3.3	14	84	3	65	71	2	8	17	1.23
47633370--47633416	13	3.5	13	82	5	67	70	2	8	19	1.24
47633191--47633488	100	3.0	99	85	6	368	40	17	17	24	1.91
47634342--47634374	12	2.8	12	86	4	50	0	15	0	84	0.61
47634342--47634374	17	1.9	17	88	11	50	0	15	0	84	0.61
47636922--47637097	40	4.4	40	88	2	248	26	27	21	24	1.99
47643004--47643058	25	2.3	23	78	12	58	43	3	16	36	1.65
47643114--47643188	22	3.3	22	75	10	69	58	6	6	28	1.49
47643203--47643334	25	5.5	25	72	13	98	56	3	5	35	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47643575--47643613	16	2.4	16	86	0	51	43	28	5	23	1.75
47643770--47643835	30	2.2	30	97	0	123	15	7	50	27	1.71
47647304--47647475	44	3.8	44	79	13	206	28	29	20	20	1.98
47647311--47647479	92	1.8	92	96	1	313	27	29	21	21	1.98
47650354--47650400	23	2.0	23	100	0	94	38	4	31	25	1.75
47650449--47650513	30	2.2	31	83	5	80	38	1	10	49	1.47
47650446--47650514	29	2.3	30	76	11	70	39	1	10	49	1.46
47658901--47659138	49	4.8	49	82	3	271	29	25	18	26	1.98
47658901--47659146	99	2.5	99	83	3	316	28	26	18	26	1.98
47670477--47670585	44	2.5	44	84	4	130	16	17	32	33	1.92
47670508--47670593	44	2.0	44	92	0	145	16	18	33	31	1.93
47672299--47672483	79	2.3	81	83	9	220	24	28	23	23	2.00
47672299--47672483	40	4.7	40	81	10	218	24	28	23	23	2.00
47687461--47687612	75	2.0	75	98	0	295	42	17	22	17	1.89
47706776--47706822	18	2.5	20	79	6	62	23	17	6	53	1.66
47707921--47707961	21	2.0	21	95	0	73	0	60	0	39	0.96
47712410--47712468	19	3.1	19	95	0	100	52	15	5	27	1.63
47733926--47734081	82	1.9	81	85	3	215	26	16	28	28	1.97
47733925--47734078	55	2.9	52	82	7	175	27	16	27	27	1.97
47733926--47734081	27	5.7	27	81	6	163	26	16	28	28	1.97
47733918--47734102	27	6.8	27	75	9	101	26	16	28	29	1.97
47733918--47734102	82	2.3	81	78	2	210	26	16	28	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47744187--47744485	48	6.3	48	81	7	333	27	19	30	22	1.98
47744174--47744485	96	3.3	95	85	6	400	26	18	31	23	1.98
47746346--47746563	40	5.5	40	90	2	307	22	24	28	24	1.99
47751624--47751849	27	8.4	27	86	1	274	35	19	19	25	1.95
47752021--47752086	27	2.4	27	80	5	71	21	24	21	33	1.97
47756055--47756093	19	2.1	19	85	0	51	38	7	20	33	1.81
47757268--47757378	42	2.6	40	80	13	100	29	14	23	32	1.94
47757287--47757378	42	2.2	42	84	11	118	30	14	25	30	1.94
47757565--47757609	21	2.2	21	84	7	67	48	6	17	26	1.72
47767247--47767358	27	4.2	26	83	7	134	16	24	22	37	1.93
47767247--47767358	54	2.1	54	86	3	154	16	24	22	37	1.93
47768560--47768643	28	3.2	28	64	25	74	23	16	28	30	1.96
47768512--47768700	50	3.8	49	83	1	216	26	18	25	29	1.98
47768512--47768699	99	1.9	101	85	4	265	26	18	25	29	1.98
47777312--47777369	20	2.9	20	78	14	57	58	1	5	34	1.30
47777342--47777526	81	2.3	81	80	5	185	57	0	8	34	1.28
47777487--47777526	18	2.1	18	90	9	62	65	0	7	27	1.20
47777487--47777589	23	4.7	21	73	22	77	62	1	2	33	1.21
47777526--47777573	25	1.9	26	87	8	73	60	2	0	37	1.09
47777555--47777612	25	2.2	26	82	11	66	60	3	1	34	1.24
47787631--47787800	48	3.5	48	76	3	180	24	26	20	28	1.99
47787631--47787804	96	1.8	96	89	0	276	24	26	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47787601--47787808	48	4.4	48	75	4	179	25	25	21	28	1.99
47788893--47788934	11	3.6	11	87	6	57	50	14	2	33	1.56
47799871--47799948	26	2.9	25	75	11	75	11	16	5	66	1.40
47800669--47800799	63	2.1	63	84	2	165	25	24	25	25	2.00
47810546--47810587	15	2.8	15	85	7	59	19	14	14	52	1.75
47810753--47810824	36	2.0	36	100	0	144	25	13	19	41	1.88
47812133--47812162	6	5.0	6	100	0	60	66	0	16	16	1.25
47818958--47819011	27	2.0	27	100	0	108	22	18	25	33	1.97
47819329--47819363	18	1.9	18	88	0	52	34	14	20	31	1.92
47825505--47825688	40	4.6	40	82	6	196	23	20	27	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352