genome.fa.s11.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  131  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42334004--42334061	30	1.9	30	89	0	89	31	3	12	53	1.54
42337283--42337317	16	2.2	16	90	10	54	51	2	17	28	1.59
42337237--42337432	92	2.2	91	90	2	315	42	3	15	38	1.64
42337375--42337409	16	2.2	16	90	10	54	51	2	17	28	1.59
42338162--42338239	39	2.0	40	82	7	97	20	19	28	32	1.97
42339334--42339438	54	1.9	54	98	0	201	25	20	14	39	1.91
42340319--42340437	58	2.1	58	100	0	238	28	26	8	36	1.85
42340333--42340453	58	2.1	58	85	3	163	31	26	9	32	1.89
42340823--42340936	56	2.0	56	100	0	228	52	1	12	33	1.49
42346770--42346879	27	4.1	27	73	15	93	37	20	23	18	1.94
42354416--42354505	27	3.3	27	83	10	112	40	21	23	15	1.91
42354429--42354518	27	3.3	27	74	13	85	37	23	23	15	1.93
42355711--42355743	16	2.1	16	94	0	57	54	6	33	6	1.50
42361087--42361169	27	3.1	27	92	1	141	40	14	14	30	1.86
42371196--42371244	25	2.0	25	87	0	71	38	22	14	24	1.91
42371355--42371424	25	2.8	25	88	0	95	32	24	18	24	1.97
42371380--42371437	24	2.4	25	78	16	68	32	18	22	25	1.97
42371646--42371720	31	2.4	31	90	0	123	34	18	24	22	1.96
42376329--42376391	6	10.3	6	77	16	58	47	15	15	20	1.82
42376511--42376569	27	2.2	26	82	5	73	40	22	20	16	1.91
42376750--42376813	22	2.9	22	79	9	76	31	21	25	21	1.98
42377203--42377451	27	9.2	27	82	3	259	26	19	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42377203--42377451	81	3.1	82	82	4	290	26	19	17	36	1.94
42377436--42377766	27	12.3	27	78	5	224	31	9	20	38	1.85
42377436--42377766	81	4.1	80	76	5	256	31	9	20	38	1.85
42377490--42377775	27	10.6	27	82	2	252	30	9	20	39	1.84
42377543--42377791	134	1.9	134	79	3	286	32	8	19	39	1.83
42377582--42377794	107	2.0	107	80	5	243	31	8	19	39	1.82
42382846--42382887	21	2.0	21	100	0	84	42	14	9	33	1.78
42389479--42389557	37	2.1	37	88	0	113	25	32	18	22	1.97
42389722--42389944	47	4.7	47	97	1	410	29	30	8	32	1.86
42394848--42394887	19	2.1	19	85	0	53	20	2	7	70	1.24
42398471--42398609	48	2.9	48	98	0	269	33	6	30	30	1.83
42398750--42398858	37	2.9	37	95	0	191	22	19	31	26	1.98
42402314--42402344	16	1.9	16	93	0	53	35	22	0	41	1.54
42402311--42402350	20	2.0	20	85	0	53	37	22	0	40	1.54
42402536--42402790	55	4.8	54	78	7	238	21	24	16	37	1.93
42404807--42404885	41	1.9	41	97	0	149	44	8	18	27	1.80
42412270--42412498	48	4.8	48	76	5	194	20	17	27	34	1.95
42421751--42422013	46	5.6	45	75	15	189	29	18	27	24	1.98
42423184--42423223	21	2.0	21	85	5	55	10	35	30	25	1.88
42427140--42427204	34	2.0	34	85	11	91	30	24	18	26	1.98
42427513--42427560	24	2.0	25	83	4	62	25	14	20	39	1.91
42429037--42429094	26	2.2	26	93	0	98	36	24	5	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42433336--42433445	26	4.2	26	95	0	175	35	24	6	33	1.81
42437786--42437925	40	3.4	42	77	15	130	27	16	25	30	1.97
42437871--42437990	41	2.9	41	87	2	152	28	16	26	28	1.97
42439319--42439367	23	2.2	22	82	10	55	28	0	24	46	1.53
42448840--42448934	31	3.1	31	89	0	136	26	23	13	36	1.92
42449156--42449250	25	3.8	26	84	6	117	30	23	22	24	1.99
42449380--42449427	25	1.9	25	91	0	78	27	12	22	37	1.90
42467043--42467174	42	3.1	43	77	12	128	30	24	17	28	1.97
42481455--42481500	25	1.9	25	86	8	69	60	17	6	15	1.55
42486691--42486758	10	7.3	9	74	12	50	64	2	4	27	1.27
42502379--42502473	41	2.3	41	81	1	111	15	17	28	37	1.91
42509579--42509653	30	2.6	29	80	6	89	53	14	2	29	1.55
42509748--42510472	291	2.5	291	94	0	1281	30	11	17	40	1.85
42511496--42511550	25	2.2	26	83	9	69	58	7	9	25	1.55
42514795--42515069	47	5.9	47	96	0	489	33	9	29	28	1.88
42515044--42515093	24	2.1	24	96	0	91	36	10	24	30	1.88
42514903--42515228	165	2.0	165	92	0	544	32	9	29	28	1.88
42514950--42515177	118	1.9	118	96	0	420	33	8	28	29	1.87
42514997--42515140	71	2.0	71	95	0	261	34	9	27	28	1.89
42515068--42515228	47	3.4	47	91	0	250	32	8	31	27	1.87
42515347--42515425	37	2.1	37	88	0	113	24	17	31	26	1.97
42517361--42517788	119	3.6	118	87	4	443	25	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42517331--42517787	159	2.9	159	82	4	491	24	21	28	25	1.99
42517278--42517774	40	12.6	40	82	5	455	24	22	27	24	2.00
42520674--42521052	47	8.3	47	89	8	575	32	8	30	29	1.87
42520821--42520895	22	3.3	22	63	7	60	30	10	30	28	1.90
42520674--42521052	142	2.8	140	91	5	580	32	8	30	29	1.87
42520786--42521049	83	3.0	84	88	6	287	31	8	31	28	1.87
42521171--42521249	37	2.1	37	90	0	122	24	18	31	25	1.98
42523075--42523179	38	2.7	38	78	11	99	24	20	30	24	1.98
42523071--42523577	79	6.5	81	77	8	385	25	21	27	25	1.99
42523153--42523531	118	3.2	118	85	5	473	25	21	27	25	2.00
42523071--42523563	39	12.6	40	79	7	394	25	21	27	25	1.99
42523153--42523577	118	3.6	119	83	6	400	25	21	27	25	1.99
42526410--42526819	47	8.7	47	91	1	619	32	8	30	28	1.87
42526600--42526678	25	3.3	25	63	10	65	32	6	30	30	1.82
42526939--42527014	35	2.1	35	85	7	100	25	18	31	25	1.97
42529318--42529351	18	2.0	18	88	11	54	29	5	5	58	1.45
42531962--42532133	93	1.8	93	96	0	317	27	29	21	20	1.98
42531955--42532130	46	3.8	46	79	12	216	28	29	21	20	1.98
42539452--42539623	93	1.8	93	96	0	317	27	29	21	20	1.98
42539445--42539620	46	3.8	46	79	12	216	28	29	21	20	1.98
42548719--42548754	18	2.1	18	89	5	56	11	44	30	13	1.79
42551729--42551781	27	2.0	27	100	0	106	37	18	18	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42558007--42558061	25	2.1	25	87	12	76	23	0	30	45	1.53
42564434--42564555	49	2.5	49	85	6	151	31	19	24	24	1.98
42571844--42571871	5	5.6	5	100	0	56	82	0	0	17	0.68
42577548--42577719	46	3.7	46	77	14	192	30	27	19	22	1.98
42577553--42577723	93	1.8	93	92	2	290	30	28	19	22	1.98
42578017--42578065	23	2.1	23	100	0	98	24	20	8	46	1.77
42582601--42582745	40	3.6	40	84	6	177	26	24	26	23	2.00
42587135--42587358	40	5.7	39	88	6	267	25	26	21	25	2.00
42587135--42587358	118	1.9	120	82	7	287	25	26	21	25	2.00
42595126--42595344	40	5.7	40	84	10	251	26	27	21	24	1.99
42595093--42595344	79	3.2	77	80	12	266	25	27	21	25	1.99
42597716--42597768	25	2.2	24	86	10	72	37	20	22	18	1.94
42598261--42598300	21	1.9	21	84	0	53	35	17	0	47	1.48
42601239--42601396	60	2.7	60	78	4	142	23	16	13	46	1.82
42601608--42601639	15	2.1	15	94	0	55	31	9	34	25	1.87
42611901--42612084	40	4.7	40	83	7	216	25	27	22	24	2.00
42611903--42612084	79	2.3	81	82	8	214	25	26	23	24	2.00
42617056--42617107	26	2.0	26	100	0	104	26	15	11	46	1.80
42622676--42622914	118	2.0	118	98	0	460	33	23	14	28	1.94
42623275--42623304	15	1.9	16	93	6	53	40	3	0	56	1.16
42625317--42625372	26	2.2	26	100	0	112	30	7	26	35	1.83
42637081--42637131	27	1.9	26	88	4	75	39	15	15	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42639941--42639999	29	2.0	30	90	3	93	54	10	3	32	1.51
42640421--42640445	9	2.8	9	100	0	50	92	0	8	0	0.40
42640983--42641068	44	2.0	44	88	0	127	39	9	4	46	1.57
42644833--42644880	24	2.0	24	91	0	78	37	18	22	20	1.94
42645269--42645334	13	5.1	13	80	7	80	33	7	24	34	1.84
42649100--42649135	19	1.9	19	88	5	56	44	11	0	44	1.39
42649431--42649491	30	2.0	30	83	0	77	32	22	6	37	1.80
42653167--42653731	48	11.8	48	90	0	878	34	6	27	31	1.82
42653776--42653878	37	2.8	37	92	0	170	23	20	31	25	1.98
42657662--42657794	49	2.7	49	83	2	169	20	27	23	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352