genome.fa.s11.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  102  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32493760--32493848	46	1.9	46	90	0	142	25	31	8	33	1.87
32493824--32493967	47	3.1	47	85	0	153	27	27	10	34	1.89
32495597--32495639	14	3.1	14	86	6	61	60	9	0	30	1.28
32495597--32495635	13	2.9	13	92	3	60	61	10	0	28	1.28
32498132--32498345	46	4.7	46	76	5	175	24	28	20	27	1.99
32500432--32500457	13	2.0	13	100	0	52	38	15	15	30	1.88
32502502--32502585	44	1.9	44	82	0	105	35	23	15	25	1.94
32503266--32503316	20	2.7	18	82	14	59	37	21	0	41	1.54
32505932--32506062	47	2.8	47	84	0	181	35	27	15	21	1.93
32507363--32507413	20	2.5	20	80	0	66	17	31	31	19	1.95
32509557--32509604	23	2.1	23	100	0	96	35	20	4	39	1.72
32510865--32511011	43	3.4	42	74	5	125	32	23	14	29	1.94
32513033--32513065	17	1.9	17	100	0	66	36	6	27	30	1.81
32522026--32522282	39	6.5	39	92	1	399	19	21	29	29	1.97
32524157--32524207	26	2.0	26	84	0	66	41	13	3	41	1.63
32524974--32525006	17	1.9	17	88	11	50	21	21	21	36	1.95
32539838--32539875	19	2.1	19	95	5	69	44	0	0	55	0.99
32540394--32540650	136	1.9	136	90	0	415	30	17	17	35	1.93
32541373--32541404	11	2.9	11	95	0	55	40	18	0	40	1.51
32541341--32541402	32	1.9	32	83	6	81	41	16	1	40	1.57
32541538--32541647	48	2.3	47	84	12	143	38	10	3	48	1.54
32541538--32541671	48	2.8	48	82	8	132	33	9	4	52	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32553879--32553921	18	2.4	18	84	7	52	20	27	9	41	1.83
32557412--32557919	126	4.0	125	88	2	732	27	19	17	35	1.94
32558453--32558523	19	3.8	19	85	12	103	43	22	0	33	1.54
32558482--32558513	16	2.0	16	100	0	64	37	25	0	37	1.56
32558644--32558698	16	3.4	16	74	18	60	54	27	0	18	1.44
32561480--32561584	27	3.9	26	75	5	75	42	13	19	24	1.87
32564771--32564810	16	2.5	16	83	0	53	35	22	25	17	1.95
32567000--32567047	24	2.0	24	100	0	96	37	33	8	20	1.83
32570406--32570459	27	2.0	27	85	3	74	35	20	22	22	1.96
32570460--32570828	27	13.4	27	81	6	373	24	19	19	36	1.95
32570588--32570763	89	2.0	89	90	2	282	23	19	18	37	1.94
32570561--32570828	116	2.4	116	83	8	340	24	19	19	37	1.94
32570551--32570818	143	1.9	143	84	1	367	24	19	20	36	1.95
32578252--32578503	27	9.3	27	87	0	342	24	19	18	37	1.94
32578252--32578503	81	3.1	81	88	0	378	24	19	18	37	1.94
32580014--32580050	18	2.1	18	89	0	56	13	13	29	43	1.82
32582642--32582698	11	5.5	10	77	12	53	64	0	7	28	1.19
32583193--32583222	12	2.6	11	90	10	51	70	0	3	26	1.03
32584892--32584951	30	2.0	30	96	0	111	30	5	16	48	1.67
32584709--32585136	236	1.8	236	91	0	712	30	21	17	31	1.96
32584946--32585398	207	2.2	207	95	0	818	29	22	17	29	1.97
32590311--32590488	27	6.6	27	84	3	178	30	28	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32590332--32590487	82	1.9	81	89	3	242	30	28	14	26	1.95
32598204--32598381	27	6.6	27	80	6	189	29	28	15	26	1.96
32598225--32598380	82	1.9	81	86	3	224	28	28	16	26	1.96
32608290--32608341	21	2.5	20	82	14	61	65	0	9	25	1.23
32608390--32608419	14	2.1	14	93	0	51	70	0	0	30	0.88
32608842--32608967	13	8.9	13	67	20	51	60	1	5	32	1.29
32608847--32608904	30	1.9	30	82	6	73	62	1	3	32	1.22
32609195--32609236	21	2.0	21	85	4	57	61	0	9	28	1.27
32612358--32612548	56	3.4	56	86	1	240	25	15	23	36	1.93
32613979--32614051	23	3.1	23	84	3	101	30	21	20	27	1.98
32613958--32614052	24	4.0	24	82	6	113	28	23	21	27	1.99
32614102--32614168	20	3.3	20	91	0	107	32	22	10	34	1.88
32622229--32622301	23	3.1	23	83	11	94	31	20	19	28	1.97
32622227--32622303	24	3.2	24	85	7	104	31	20	18	29	1.96
32622354--32622398	20	2.2	20	88	0	63	33	20	13	33	1.91
32622382--32622415	17	1.9	18	88	5	52	38	20	5	35	1.77
32629027--32629211	49	3.7	49	81	2	235	28	26	19	25	1.99
32629029--32629216	100	1.9	100	95	0	340	28	26	20	25	1.99
32633164--32633242	31	2.5	31	97	0	149	27	25	18	27	1.98
32633509--32633605	25	3.8	26	91	1	153	25	22	24	26	2.00
32633496--32633605	51	2.2	49	90	8	168	25	22	22	29	1.99
32633496--32633605	25	4.4	25	87	4	134	25	22	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32633655--32633721	20	3.3	20	89	4	100	31	17	10	40	1.84
32633757--32633804	25	1.9	25	86	0	69	29	14	22	33	1.94
32634429--32634492	27	2.4	27	81	5	76	21	25	17	35	1.95
32634554--32634668	27	4.3	27	75	6	108	29	7	21	40	1.81
32634546--32634581	19	1.9	19	88	5	56	33	5	25	36	1.79
32634566--32634708	27	5.3	26	68	14	76	29	11	21	37	1.89
32634700--32634791	27	3.4	27	90	3	141	42	9	21	26	1.84
32634743--32634991	27	9.1	27	76	7	146	36	6	21	35	1.80
32634700--32634979	54	5.2	53	74	7	161	37	7	21	33	1.82
32637455--32637675	40	5.6	40	89	3	297	21	27	24	27	1.99
32645494--32645704	40	5.3	40	91	2	311	22	27	23	27	1.99
32648759--32648823	27	2.4	27	87	5	87	41	21	12	24	1.87
32648694--32648858	78	2.1	78	80	6	181	41	16	11	29	1.84
32649335--32649406	32	2.2	32	85	4	101	23	22	22	31	1.98
32652958--32653029	28	2.6	28	93	0	117	27	20	26	25	1.99
32653137--32653205	32	2.2	32	97	0	129	43	8	15	31	1.78
32656493--32656615	43	2.9	42	84	4	140	34	23	17	25	1.96
32659926--32660055	48	2.7	48	83	5	156	23	17	24	33	1.96
32672704--32673155	231	2.0	230	90	0	715	35	14	11	38	1.82
32682767--32682825	28	2.3	26	83	16	86	20	16	18	44	1.87
32682775--32682833	28	2.1	28	100	0	118	22	16	16	44	1.87
32696341--32696376	19	1.9	18	88	5	54	66	2	5	25	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32704817--32705034	39	5.6	40	90	5	304	20	27	24	27	1.99
32712876--32713059	40	4.6	40	94	2	309	20	27	25	27	1.99
32715995--32716070	34	2.3	33	82	8	100	28	18	25	27	1.98
32732504--32732648	40	3.6	40	85	4	184	24	26	24	25	2.00
32739695--32739880	41	4.6	41	87	3	243	24	26	23	25	2.00
32739725--32739878	81	1.9	82	89	4	240	25	25	24	24	2.00
32742839--32742872	18	1.9	18	94	5	61	47	11	26	14	1.79
32751698--32751751	27	2.0	26	85	3	72	16	25	22	35	1.95
32751766--32751846	27	2.9	26	77	12	81	24	23	16	35	1.94
32753172--32753287	43	2.7	43	95	0	214	30	32	25	11	1.91
32753331--32753410	38	2.1	38	85	0	106	28	27	18	25	1.98
32755282--32755408	29	4.5	29	85	5	154	32	25	12	29	1.93
32755282--32755408	28	4.5	28	87	3	166	32	25	12	29	1.93
32755281--32755408	57	2.3	56	86	4	177	32	26	12	28	1.93
32768497--32768551	20	2.8	20	91	5	85	34	12	20	32	1.90
32768608--32768727	23	5.1	24	86	8	176	27	20	20	32	1.97
32768944--32768999	28	2.0	28	82	6	69	32	16	23	28	1.96
32782922--32783082	86	1.9	86	83	10	213	25	16	26	31	1.97
32782973--32783082	42	2.6	43	81	8	127	24	18	28	29	1.98
32791185--32791317	47	2.8	49	80	16	181	30	29	19	21	1.97
32791188--32791333	46	3.2	46	78	13	149	30	28	19	21	1.98
32808042--32808245	40	5.1	40	82	7	236	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32808043--32808260	79	2.7	80	77	9	232	26	21	26	25	2.00
32825432--32825476	17	2.6	17	92	0	72	26	4	37	31	1.76
32826343--32826387	22	2.0	22	83	8	56	22	2	51	24	1.60
32836823--32836962	44	3.3	43	81	13	155	30	26	17	25	1.97
32851061--32851244	40	4.7	40	82	7	182	23	22	27	26	2.00
32851061--32851244	79	2.3	81	81	7	209	23	22	27	26	2.00
32859349--32859534	40	4.7	40	84	5	207	23	22	27	26	1.99
32861084--32861135	23	2.3	23	96	0	95	57	19	3	19	1.55
32861861--32861992	56	2.4	56	88	0	201	34	21	13	29	1.92
32862602--32862632	15	2.1	15	93	0	53	54	16	0	29	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352