genome.fa.s11.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  170  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55602861--55603003	54	2.7	54	89	3	200	35	21	23	19	1.96
55602861--55603000	27	5.2	27	80	10	137	35	21	22	20	1.96
55604596--55604703	26	4.2	26	91	0	180	36	24	8	31	1.85
55607086--55607224	48	2.9	47	81	6	165	25	29	18	25	1.98
55614338--55614461	41	2.9	41	75	9	115	28	16	26	28	1.97
55625660--55625756	41	2.2	45	82	8	121	24	18	27	28	1.98
55628168--55628206	20	2.0	20	85	10	53	7	7	35	48	1.61
55628706--55628780	23	3.3	23	79	5	80	21	18	20	40	1.92
55628715--55628796	23	3.6	23	84	0	92	19	15	21	42	1.89
55632256--55632474	46	4.7	47	78	11	179	28	18	29	23	1.98
55633531--55633574	16	2.8	16	78	0	52	20	6	31	40	1.79
55636940--55637108	46	3.7	46	77	13	193	22	20	27	29	1.98
55636933--55637103	93	1.8	93	93	0	297	22	21	28	28	1.99
55642351--55642526	46	3.8	46	77	4	183	26	19	30	23	1.98
55653035--55653132	46	2.3	40	79	16	108	34	15	12	37	1.85
55655392--55655551	32	5.0	31	85	6	221	30	12	11	45	1.77
55655392--55655551	64	2.5	64	91	2	250	30	12	11	45	1.77
55657560--55657612	21	2.5	21	93	0	88	30	37	9	22	1.86
55658727--55658761	18	2.1	17	89	10	54	54	0	0	45	0.99
55667407--55667511	27	3.8	27	85	10	133	36	21	23	18	1.95
55667400--55667511	55	2.1	54	86	5	154	36	22	23	17	1.95
55667928--55667967	8	5.0	8	87	0	53	7	25	22	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55670045--55670071	14	1.9	14	100	0	54	59	14	3	22	1.51
55670873--55670932	26	2.3	26	85	5	77	43	10	13	33	1.77
55672797--55672835	19	2.0	20	85	5	53	38	12	15	33	1.85
55679565--55679633	26	2.7	26	83	0	84	28	20	27	23	1.99
55682207--55682240	12	2.8	12	90	4	50	26	8	20	44	1.81
55684732--55684853	22	5.3	22	62	21	61	25	29	11	33	1.91
55684704--55684964	47	5.5	47	91	2	373	27	30	8	32	1.87
55684934--55684995	31	2.0	31	100	0	124	32	25	6	35	1.82
55684887--55685042	80	2.0	76	93	5	267	30	27	7	33	1.85
55685701--55685739	17	2.3	17	100	0	78	15	28	15	41	1.87
55686381--55686500	56	2.1	56	98	0	231	22	23	9	45	1.81
55698743--55698804	31	2.0	32	84	9	83	30	11	0	58	1.33
55698780--55698833	25	2.2	25	90	3	83	31	5	0	62	1.18
55700997--55701064	26	2.6	27	92	4	120	54	0	2	42	1.15
55701042--55701093	19	2.7	19	91	5	79	55	0	0	44	0.99
55710289--55710364	25	2.9	24	84	9	80	59	1	1	38	1.14
55710981--55711033	24	2.2	24	90	3	81	45	0	1	52	1.11
55711575--55711600	2	13.0	2	100	0	52	50	0	0	50	1.00
55716681--55716739	24	2.5	24	84	13	77	16	28	0	54	1.43
55719576--55719615	19	2.1	19	90	0	62	42	7	10	40	1.67
55732332--55732577	133	1.8	133	100	0	492	26	34	16	22	1.95
55733152--55733427	47	5.8	47	73	12	201	25	31	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55733154--55733423	92	2.8	96	77	8	277	25	31	16	26	1.97
55740649--55740673	13	1.9	13	100	0	50	20	32	40	8	1.81
55744139--55744231	28	3.3	28	65	19	75	37	7	12	41	1.72
55744126--55744238	57	2.0	57	98	1	219	38	7	13	40	1.71
55745904--55746007	53	2.0	53	98	0	199	27	20	19	32	1.96
55754457--55754641	40	4.7	38	84	7	158	24	22	27	25	2.00
55754457--55754641	79	2.3	81	83	8	236	24	22	27	25	2.00
55754510--55754674	79	2.1	79	83	6	201	26	21	27	24	1.99
55762309--55762531	79	2.8	78	82	10	258	25	22	27	25	2.00
55762310--55762531	40	5.6	40	84	9	244	25	22	27	24	2.00
55762316--55762564	79	3.2	78	78	12	242	26	21	26	24	1.99
55767448--55767499	27	1.9	27	96	0	95	28	32	25	13	1.93
55767652--55767703	26	2.0	26	96	0	95	28	34	23	13	1.92
55767414--55767780	102	3.6	103	93	2	589	30	29	20	19	1.97
55768109--55768172	30	2.2	29	81	10	76	29	28	6	35	1.82
55768116--55768172	30	1.9	30	85	3	80	29	24	7	38	1.82
55769030--55769158	45	2.9	44	80	6	136	44	13	17	24	1.84
55771914--55772028	26	4.3	26	76	5	88	39	21	11	27	1.88
55771914--55771982	27	2.6	25	82	11	75	42	24	8	24	1.83
55772007--55772176	27	6.3	27	82	1	180	30	21	7	40	1.81
55772021--55772176	53	2.9	54	83	2	181	31	21	6	41	1.78
55772168--55772276	27	4.1	27	77	13	109	37	24	10	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55772189--55772534	27	12.9	27	84	5	389	34	20	19	25	1.96
55772990--55773054	22	3.0	22	75	8	69	21	23	21	33	1.97
55773213--55773314	27	3.8	27	85	5	116	19	23	20	36	1.95
55773213--55773314	54	1.9	53	83	2	132	19	23	20	36	1.95
55773452--55773531	6	12.8	6	73	16	65	18	15	16	50	1.79
55773452--55773532	31	2.6	31	94	2	135	18	14	16	50	1.78
55773452--55773555	31	3.3	31	90	1	118	19	16	14	50	1.79
55775118--55775285	48	3.6	48	81	8	179	25	19	30	23	1.98
55775160--55775328	48	3.5	48	78	15	165	28	15	29	26	1.96
55781554--55781587	15	2.3	15	100	0	68	41	5	23	29	1.78
55785049--55785470	48	8.9	47	69	12	170	27	18	29	24	1.98
55785011--55785187	46	3.8	45	69	15	119	30	19	27	22	1.98
55791178--55791222	15	3.0	15	90	0	72	13	17	13	55	1.69
55794246--55794329	43	2.0	43	82	0	105	21	15	29	33	1.94
55797972--55798088	58	1.9	63	85	11	165	52	9	17	20	1.71
55806324--55806380	26	2.2	26	81	6	71	43	22	19	14	1.86
55806429--55806493	26	2.5	26	80	7	71	38	16	20	24	1.93
55807518--55807573	28	2.0	28	100	0	112	25	10	21	42	1.85
55811564--55811593	15	1.9	16	93	6	53	50	0	6	43	1.28
55827572--55827615	22	2.0	22	100	0	88	36	4	9	50	1.55
55834152--55834182	11	2.8	11	95	0	53	29	3	48	19	1.64
55838236--55838328	18	5.2	18	90	0	150	31	16	24	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55838236--55838328	36	2.6	36	94	0	168	31	16	24	27	1.96
55838872--55838902	11	2.8	11	95	0	53	29	3	48	19	1.64
55843149--55843211	17	3.6	17	76	14	65	66	0	1	31	1.01
55843179--55843237	19	3.2	19	85	4	68	64	1	0	33	1.04
55843192--55843271	10	7.9	10	75	8	54	62	5	1	31	1.24
55843192--55843243	19	2.5	20	81	12	61	63	3	0	32	1.12
55843203--55843267	29	2.2	28	79	12	69	61	6	1	30	1.29
55843233--55843287	20	2.7	19	77	8	56	63	9	1	25	1.34
55843739--55843779	19	2.2	18	86	4	55	48	2	9	39	1.49
55847662--55847727	20	3.4	20	68	16	66	37	21	9	31	1.85
55847661--55847737	38	2.0	38	100	0	154	33	24	10	31	1.89
55848990--55849165	42	4.2	42	78	4	167	47	15	19	17	1.82
55848950--55849080	63	2.1	61	84	2	163	48	15	18	18	1.82
55848969--55849101	21	6.3	21	78	1	124	48	13	17	21	1.81
55849093--55849153	21	2.9	21	87	0	77	45	19	22	11	1.82
55848988--55849143	84	1.9	84	83	2	206	46	14	19	19	1.84
55849119--55849164	21	2.2	21	92	0	74	52	15	21	10	1.73
55850072--55850097	5	5.2	5	100	0	52	38	0	0	61	0.96
55851274--55851369	29	3.3	28	70	17	72	31	0	3	65	1.08
55851286--55851478	19	10.2	18	70	24	89	33	0	2	64	1.09
55851345--55851461	18	6.3	19	70	22	63	35	0	1	61	1.12
55851275--55851480	48	4.4	45	73	12	159	33	0	2	63	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55851271--55851371	30	3.5	30	73	12	95	32	0	2	64	1.09
55851301--55851478	66	2.7	64	76	15	177	33	0	2	63	1.11
55851426--55851494	18	3.7	18	76	19	70	39	1	0	59	1.06
55860710--55860753	24	1.9	22	86	9	61	29	22	0	47	1.51
55860718--55860776	31	1.9	31	86	10	86	28	22	0	49	1.50
55862015--55862053	17	2.3	17	86	8	53	48	0	0	51	1.00
55869925--55870096	93	1.8	93	96	0	317	27	29	21	20	1.98
55869918--55870093	46	3.8	46	79	12	216	28	29	21	20	1.98
55886733--55886775	6	7.0	6	91	2	50	16	25	0	58	1.38
55886733--55886775	12	3.5	12	87	3	59	16	25	0	58	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352