genome.fa.s11.2.7.7.80.10.50.1000.348.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  348  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111470338--111470403	29	2.3	29	83	0	78	57	6	3	33	1.38
111470951--111471075	57	2.2	57	95	0	223	27	20	10	42	1.84
111475478--111475590	58	2.0	57	87	8	167	34	16	12	36	1.87
111476004--111476181	88	2.0	88	98	0	347	38	15	15	31	1.88
111479407--111479460	28	1.9	28	100	0	108	46	14	12	25	1.81
111480447--111480492	17	2.5	19	76	16	53	60	0	4	34	1.16
111480443--111480546	26	3.9	26	66	12	68	58	1	3	35	1.27
111481416--111481463	24	2.0	24	100	0	96	58	12	4	25	1.52
111485288--111485443	79	2.0	80	91	3	253	29	20	3	46	1.66
111485288--111485446	40	4.0	39	93	3	246	29	20	3	46	1.66
111486831--111486864	18	1.9	18	88	5	52	29	0	5	64	1.17
111487964--111488023	33	1.9	31	83	12	79	40	1	0	58	1.08
111488321--111488377	29	1.9	30	92	3	98	31	3	10	54	1.51
111492612--111492658	21	2.2	22	92	3	78	21	38	19	21	1.94
111502699--111502744	23	2.0	23	84	12	60	45	10	6	36	1.65
111502706--111502750	23	2.0	23	82	8	56	40	13	8	37	1.76
111509750--111509806	30	1.9	30	85	0	78	14	28	33	24	1.94
111514810--111514861	22	2.3	22	78	15	52	59	3	3	32	1.33
111515320--111515350	16	1.9	16	93	0	53	58	0	0	41	0.98
111521224--111521248	12	2.1	12	100	0	50	36	8	16	40	1.77
111535605--111535644	21	2.0	21	90	5	64	47	0	10	42	1.37
111537676--111537725	20	2.5	21	83	9	68	66	0	0	34	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111543078--111543104	14	1.9	14	100	0	54	22	0	48	29	1.51
111556017--111556055	19	2.2	19	86	9	55	35	0	2	61	1.10
111556365--111556425	31	2.0	31	83	6	79	37	9	6	45	1.63
111558968--111558992	12	2.1	12	100	0	50	32	16	16	36	1.90
111558970--111559071	51	2.0	51	90	3	161	25	24	12	37	1.91
111576805--111576864	31	1.9	32	90	6	97	38	18	0	43	1.50
111587066--111587092	11	2.5	11	100	0	54	59	11	7	22	1.56
111590908--111590948	21	2.0	21	95	0	73	31	21	26	19	1.97
111592851--111592892	22	1.9	22	100	0	84	28	9	23	38	1.86
111600960--111601114	78	2.0	78	97	1	294	51	6	8	33	1.58
111602003--111602032	10	3.0	10	95	0	51	43	0	0	56	0.99
111603934--111603965	17	1.9	17	93	6	57	65	3	0	31	1.08
111604237--111604261	10	2.5	10	100	0	50	24	8	0	68	1.16
111606120--111606180	29	2.0	31	87	9	90	18	8	24	49	1.74
111607175--111607207	3	11.0	3	100	0	66	33	0	0	66	0.92
111611727--111611778	11	4.8	10	73	17	50	82	9	7	0	0.84
111613645--111613876	88	2.6	88	88	0	340	28	15	28	27	1.96
111613867--111614670	44	18.5	44	70	11	512	32	17	23	26	1.97
111613879--111614670	132	6.1	132	90	2	1242	32	17	23	27	1.97
111613907--111614670	387	2.0	387	92	0	1287	32	17	23	26	1.97
111614754--111615255	44	11.6	44	69	11	331	35	21	23	18	1.95
111614663--111615350	87	8.0	86	88	3	920	36	21	23	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111617044--111617264	117	1.9	120	79	10	258	29	4	7	58	1.44
111623500--111623731	88	2.6	88	90	0	358	28	16	28	27	1.97
111623721--111624118	44	9.0	43	70	13	231	32	18	21	27	1.96
111623721--111624140	88	4.8	87	73	10	300	33	17	22	27	1.96
111623735--111624138	132	3.1	132	90	0	637	32	17	22	27	1.96
111624220--111624634	44	9.5	44	70	10	269	35	21	23	19	1.96
111624131--111624729	87	6.9	86	89	3	812	36	21	22	20	1.96
111624131--111624729	175	3.5	172	87	3	821	36	21	22	20	1.96
111626430--111626474	3	15.0	3	100	0	90	33	0	0	66	0.92
111626572--111626598	3	9.0	3	100	0	54	33	0	0	66	0.92
111633722--111633771	13	3.9	13	76	10	50	14	6	8	72	1.27
111633809--111633851	21	2.0	21	86	0	59	32	6	4	55	1.47
111645070--111645094	12	2.1	12	100	0	50	36	8	16	40	1.77
111648440--111648466	6	4.5	6	100	0	54	18	0	48	33	1.49
111652692--111652737	19	2.4	19	85	7	58	36	4	0	58	1.18
111653153--111653222	33	2.1	33	94	0	122	27	8	4	60	1.45
111656711--111656831	59	2.1	59	100	0	242	30	21	24	23	1.99
111668831--111669078	125	2.0	125	97	0	469	33	12	15	38	1.85
111669768--111669825	30	1.9	30	89	0	89	41	3	24	31	1.71
111670037--111670068	13	2.5	13	94	0	55	31	0	12	56	1.37
111670163--111670404	50	4.7	50	86	4	297	26	24	29	19	1.99
111670163--111670412	100	2.4	103	88	6	364	26	24	29	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111677359--111677416	30	1.9	30	89	0	89	41	3	24	31	1.71
111677628--111677659	13	2.5	13	94	0	55	31	0	12	56	1.37
111677754--111677995	50	4.7	50	86	4	297	26	24	29	19	1.99
111677754--111678003	100	2.4	103	88	6	364	26	24	29	20	1.99
111681646--111681928	144	2.0	144	87	2	417	27	19	22	31	1.98
111689240--111689311	35	2.1	35	97	0	135	41	5	20	31	1.76
111692351--111692405	21	2.5	23	75	19	64	63	9	9	18	1.49
111700119--111700220	50	2.0	50	90	0	159	51	10	16	20	1.74
111701292--111701341	24	2.1	24	92	0	82	64	0	4	32	1.12
111704376--111704425	25	2.0	25	100	0	100	48	8	8	36	1.62
111705141--111705231	47	2.0	42	82	14	103	50	3	8	37	1.50
111709853--111709882	15	2.0	15	100	0	60	33	20	0	46	1.51
111716409--111716443	18	2.0	18	88	5	54	25	22	37	14	1.92
111716702--111716731	15	2.0	15	100	0	60	33	20	6	40	1.78
111723563--111723636	18	4.1	18	92	0	121	33	12	21	32	1.90
111737417--111737453	1	37.0	1	94	0	65	0	2	0	97	0.18
111737580--111737810	118	2.0	118	92	0	390	28	31	17	22	1.97
111738600--111738701	41	2.5	41	90	1	152	24	11	34	29	1.91
111738805--111738857	22	2.4	22	82	14	65	77	0	1	20	0.87
111747252--111747309	30	1.9	30	89	0	89	41	3	24	31	1.71
111747634--111747873	50	4.7	50	84	4	284	26	23	29	20	1.99
111747634--111747883	100	2.4	103	86	6	346	26	23	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111749845--111749879	17	2.1	17	100	0	70	37	22	17	22	1.94
111754795--111754850	28	1.9	30	85	7	80	42	3	25	28	1.71
111755226--111755405	48	3.7	48	81	7	213	26	23	30	20	1.98
111755228--111755414	99	1.9	95	86	6	259	25	23	29	20	1.99
111779239--111779568	171	2.0	161	87	6	464	35	13	14	36	1.86
111780500--111780540	22	1.9	21	90	5	64	58	9	7	24	1.55
111781419--111781524	42	2.5	42	100	0	212	26	17	0	55	1.42
111781454--111781524	24	3.2	24	62	22	64	26	16	0	56	1.41
111781419--111781539	42	2.9	41	88	4	109	28	15	2	52	1.56
111784091--111784147	29	1.9	30	89	3	89	29	10	0	59	1.31
111793997--111794055	5	12.0	5	81	13	52	15	0	0	84	0.62
111793999--111794066	34	2.0	34	88	5	102	20	0	1	77	0.84
111795013--111795225	118	1.8	118	91	0	354	23	15	30	29	1.96
111804584--111804632	3	16.3	3	86	0	71	32	30	0	36	1.58
111807743--111807822	35	2.2	36	82	6	101	50	0	1	48	1.08
111813739--111813784	3	15.3	3	86	0	65	32	30	0	36	1.58
111818107--111818183	31	2.6	29	78	13	75	33	11	14	40	1.82
111825214--111825244	3	10.3	3	92	0	53	32	32	0	35	1.58
111828325--111828395	31	2.2	31	82	12	81	36	15	30	16	1.90
111829827--111829888	11	5.4	11	72	24	56	25	9	8	56	1.59
111830559--111830763	108	1.9	108	94	0	365	31	17	21	29	1.96
111831157--111831249	46	2.0	46	97	0	177	34	8	31	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111832676--111832710	17	2.1	17	100	0	70	31	11	5	51	1.61
111835627--111835662	18	2.0	18	94	0	63	16	19	25	38	1.92
111838034--111838073	20	2.0	20	85	0	53	60	12	0	27	1.33
111838190--111838238	24	2.1	23	82	14	57	51	4	8	36	1.51
111838272--111838327	3	18.7	3	81	7	69	62	1	5	30	1.28
111839695--111839978	128	2.3	124	82	6	322	28	21	19	30	1.98
111839902--111840000	44	2.2	44	75	3	101	25	25	19	30	1.98
111839941--111840251	86	3.6	85	78	10	290	23	23	22	31	1.99
111839986--111840251	86	3.1	88	81	6	301	23	23	22	30	1.99
111841492--111841522	1	31.0	1	100	0	62	0	0	0	100	0.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352