genome.fa.s11.2.7.7.80.10.50.1000.201.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  201  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66373262--66373306	7	6.1	7	87	12	56	86	0	13	0	0.57
66373262--66373296	8	4.4	8	100	0	70	88	0	11	0	0.51
66375379--66375451	30	2.4	30	83	2	83	20	23	24	31	1.98
66382843--66382882	16	2.3	18	83	12	57	52	0	37	10	1.35
66384714--66384746	7	4.9	7	92	7	59	45	54	0	0	0.99
66384714--66384749	13	2.7	13	95	4	63	44	55	0	0	0.99
66384960--66385053	47	2.0	47	95	0	170	38	11	28	21	1.88
66386201--66386250	26	1.9	26	83	0	64	36	22	22	20	1.96
66386382--66386435	27	2.0	28	85	7	76	31	18	18	31	1.95
66386683--66386723	19	2.3	17	87	8	55	21	46	19	12	1.82
66387888--66387943	24	2.3	24	81	0	76	17	37	3	41	1.67
66393716--66393789	26	2.8	26	93	0	121	37	22	22	16	1.93
66393925--66394001	27	2.8	27	80	5	66	22	16	20	40	1.91
66394536--66394597	30	2.1	30	93	0	106	35	40	3	20	1.69
66395430--66395485	24	2.3	24	81	0	67	17	37	3	41	1.67
66397226--66397284	27	2.2	27	84	3	75	35	10	18	35	1.85
66400821--66400875	26	2.1	26	82	0	65	43	16	21	18	1.88
66405228--66405279	26	2.0	27	92	3	88	15	23	36	25	1.93
66414465--66414558	28	3.3	29	89	2	138	23	14	31	29	1.95
66419000--66419052	26	2.0	26	100	0	106	32	11	18	37	1.87
66431184--66431237	27	2.0	27	85	0	72	38	14	7	38	1.75
66432475--66432621	40	3.7	40	88	0	204	34	27	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66439043--66439082	19	2.1	19	100	0	80	37	5	10	47	1.59
66452614--66452646	16	2.1	16	88	11	50	27	0	12	60	1.32
66461193--66461257	28	2.3	28	89	0	94	33	27	7	30	1.85
66461363--66461452	28	3.2	26	76	10	90	18	23	24	33	1.97
66461363--66461452	27	3.2	28	78	7	103	18	23	24	33	1.97
66461373--66461463	27	3.2	28	79	4	85	20	25	20	32	1.97
66461363--66461477	55	2.1	56	80	8	128	18	23	22	35	1.95
66461577--66461602	6	4.3	6	100	0	52	34	46	19	0	1.50
66468037--66468101	28	2.3	28	89	0	94	32	26	9	32	1.88
66468217--66468281	26	2.4	26	78	14	78	23	26	21	29	1.99
66485788--66485844	18	3.4	16	77	13	60	22	12	21	43	1.85
66486103--66486210	33	3.3	33	94	0	180	27	25	22	25	2.00
66486142--66486233	28	3.1	28	78	15	96	27	23	25	23	2.00
66486394--66486453	27	2.2	27	84	0	75	41	23	18	16	1.90
66486601--66486663	27	2.3	27	86	5	83	19	19	25	36	1.94
66486680--66486744	27	2.4	27	84	0	76	35	12	16	35	1.87
66486702--66486969	27	9.9	27	74	8	123	32	8	17	40	1.81
66486700--66486945	54	4.5	54	74	1	186	31	9	18	40	1.82
66486959--66487033	27	2.8	27	85	2	98	32	22	14	30	1.94
66490614--66490782	46	3.7	45	73	17	166	28	25	20	24	1.99
66490619--66490789	93	1.8	93	93	0	297	28	26	21	23	1.99
66493605--66493643	15	2.6	15	91	0	60	64	2	28	5	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66496966--66497058	37	2.5	37	80	3	98	37	32	11	18	1.87
66497268--66497294	9	3.0	9	100	0	54	33	11	0	55	1.35
66506081--66506253	46	3.7	46	77	11	183	24	20	25	30	1.99
66506078--66506248	93	1.8	93	89	2	272	23	20	26	29	1.99
66512032--66512209	27	6.6	27	82	6	180	29	29	14	26	1.95
66512032--66512209	54	3.3	54	82	6	216	29	29	14	26	1.95
66520160--66520336	27	6.6	27	83	2	194	29	28	15	26	1.96
66520160--66520336	54	3.3	54	85	2	230	29	28	15	26	1.96
66520181--66520335	81	1.9	81	88	2	231	29	29	15	26	1.96
66524004--66524223	104	2.1	102	90	3	343	17	19	31	31	1.95
66524144--66524292	70	2.1	70	91	2	237	23	16	29	30	1.96
66524253--66524304	26	2.0	26	92	0	86	15	21	34	28	1.94
66527868--66528040	46	3.7	46	75	10	172	22	19	28	29	1.98
66538542--66538767	50	4.5	50	82	8	262	26	18	26	29	1.98
66538542--66538767	101	2.3	99	86	4	303	26	18	26	29	1.98
66550848--66551019	46	3.7	45	76	11	170	22	29	19	28	1.98
66552906--66552948	8	5.6	8	81	10	54	32	0	0	67	0.91
66563372--66563629	38	6.8	38	79	0	264	15	23	27	33	1.95
66563399--66563629	76	3.0	76	84	0	300	16	23	27	32	1.96
66565314--66565470	57	2.8	56	80	7	183	33	21	14	30	1.93
66566307--66566348	21	2.0	21	100	0	84	9	42	9	38	1.70
66567150--66567437	48	6.0	48	87	1	362	26	16	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66567150--66567437	144	2.0	144	86	2	400	26	16	28	28	1.97
66567158--66567473	48	6.6	46	79	9	258	27	15	28	28	1.96
66567158--66567473	96	3.3	94	81	6	341	27	15	28	28	1.96
66567157--66567469	144	2.2	143	83	4	389	27	15	28	28	1.96
66569137--66569170	16	2.1	17	89	10	54	23	14	0	61	1.33
66571448--66571488	19	2.2	19	100	0	82	34	9	24	31	1.88
66572410--66572543	55	2.5	55	78	1	144	38	21	20	18	1.93
66572404--66572607	53	3.8	53	75	5	169	39	19	22	19	1.93
66572508--66572627	53	2.3	53	79	5	127	40	17	22	19	1.91
66578413--66578615	40	5.1	40	79	9	182	27	27	21	24	1.99
66578432--66578563	40	3.3	40	89	3	196	27	28	20	23	1.99
66578432--66578610	79	2.2	80	78	8	186	27	26	20	24	1.99
66585777--66585979	55	3.8	54	78	2	185	38	18	21	21	1.93
66590163--66590256	43	2.2	43	86	7	129	34	28	15	21	1.94
66597922--66597957	18	2.1	18	89	5	56	27	22	33	16	1.95
66598031--66598103	29	2.6	29	82	6	87	26	16	31	26	1.96
66605727--66605811	29	3.0	29	87	1	118	25	14	34	25	1.94
66606904--66606952	19	2.6	19	90	0	71	24	8	26	40	1.83
66609825--66610098	46	6.0	46	91	2	381	40	14	23	21	1.90
66610384--66610416	17	2.0	17	94	5	59	48	0	15	36	1.45
66612189--66612316	43	3.0	42	81	13	120	32	28	16	23	1.96
66615174--66615302	48	2.6	48	79	4	143	34	28	17	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66621060--66621184	46	2.7	46	94	0	214	21	22	28	28	1.99
66636418--66636442	12	2.1	12	100	0	50	64	8	0	28	1.22
66637339--66637458	56	2.2	55	89	1	177	26	12	23	37	1.90
66644427--66644515	27	3.3	26	85	3	106	29	17	16	35	1.93
66644467--66644834	27	13.7	27	86	4	415	31	9	19	38	1.85
66645150--66645205	28	2.0	28	86	3	78	25	37	16	21	1.93
66645263--66645297	18	2.0	18	88	5	54	28	14	20	37	1.91
66647832--66648094	40	6.6	40	87	3	316	24	20	28	26	1.99
66647871--66648129	80	3.3	80	84	3	238	25	20	28	25	1.99
66706567--66706790	40	5.7	40	81	7	224	25	27	20	25	1.99
66706567--66706791	79	2.8	79	78	6	213	25	28	20	25	1.99
66706722--66706799	40	1.9	41	82	10	97	26	28	20	24	1.99
66714313--66714435	23	5.4	24	73	16	93	35	17	21	26	1.95
66714311--66714421	45	2.5	45	81	8	129	35	18	21	25	1.95
66714309--66714412	22	4.6	22	79	12	106	34	17	22	25	1.95
66719645--66719801	43	3.7	43	75	10	151	26	19	22	30	1.98
66730885--66731026	50	2.9	50	83	5	180	30	28	16	25	1.96
66737472--66737675	40	5.1	40	97	0	374	27	27	21	23	1.99
66744970--66745055	43	2.0	43	90	0	136	33	22	13	30	1.93
66751330--66751446	43	2.7	43	86	0	144	34	25	14	25	1.94
66753003--66753060	29	2.0	29	96	0	107	60	0	6	32	1.23
66756214--66756342	28	4.5	28	88	2	177	32	25	12	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66756214--66756342	29	4.5	29	86	4	165	32	25	12	29	1.92
66756214--66756342	57	2.3	57	89	2	188	32	25	12	29	1.92
66757460--66757500	20	2.0	21	86	13	59	9	24	2	63	1.37
66758107--66758144	19	2.0	20	85	15	53	39	23	0	36	1.55
66758373--66758543	93	1.8	93	88	5	265	30	27	18	22	1.97
66758368--66758552	46	4.0	46	67	20	109	31	27	17	23	1.97
66764052--66764141	28	3.2	28	87	1	117	33	21	23	22	1.97
66764247--66764311	28	2.3	28	91	0	103	30	7	27	33	1.85
66768600--66768637	19	2.0	20	85	15	53	39	23	0	36	1.55
66768861--66769030	46	3.7	46	74	14	154	30	25	18	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352