genome.fa.s11.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  139  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45166122--45166360	27	8.6	27	78	10	185	30	27	14	27	1.95
45166111--45166278	62	2.8	63	84	11	205	32	26	13	27	1.93
45166184--45166360	54	3.3	54	85	2	230	29	28	14	27	1.95
45166205--45166359	81	1.9	81	89	2	240	29	28	14	27	1.95
45171843--45172003	40	4.0	40	83	3	198	27	27	21	22	1.99
45177469--45177517	18	2.6	19	87	3	73	51	12	20	16	1.76
45177867--45178000	27	5.0	27	76	0	115	36	18	15	29	1.92
45187327--45187404	24	3.2	24	87	0	102	21	26	15	35	1.93
45187446--45187499	24	2.3	24	80	3	65	18	24	20	37	1.94
45190426--45190476	27	2.0	26	84	7	68	21	19	17	41	1.91
45193893--45193926	18	1.9	18	94	5	61	79	11	2	5	1.02
45202260--45202396	69	2.0	69	97	0	256	44	17	9	28	1.80
45205971--45206119	40	3.7	40	85	3	210	27	27	19	25	1.99
45214099--45214247	40	3.7	40	90	3	237	25	26	22	25	2.00
45214076--45214243	80	2.1	80	90	5	261	25	26	22	25	2.00
45219848--45220023	46	3.8	46	78	16	202	21	21	28	28	1.98
45219846--45220016	93	1.8	93	94	2	308	21	21	28	28	1.99
45221635--45221697	33	1.9	33	100	0	126	30	6	12	50	1.65
45223815--45223928	48	2.4	48	83	2	142	31	21	12	34	1.91
45238116--45238148	17	1.9	17	93	0	57	42	0	12	45	1.41
45240440--45240614	46	3.7	46	81	8	178	30	19	27	22	1.98
45240445--45240798	49	7.5	49	76	11	197	28	20	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45244041--45244099	28	2.1	28	93	0	100	23	13	28	33	1.93
45246803--45246863	30	2.0	30	83	0	77	31	22	8	37	1.84
45253357--45253647	40	7.5	40	91	6	424	25	28	22	24	1.99
45253357--45253647	76	3.7	79	90	6	420	25	28	22	24	1.99
45261464--45261681	40	5.5	40	90	2	282	24	26	24	25	2.00
45279158--45279256	50	2.0	50	89	0	153	31	17	24	27	1.97
45279083--45279300	48	4.6	48	76	12	157	29	16	25	28	1.96
45286081--45286115	16	2.2	16	90	5	54	34	0	5	60	1.21
45286780--45286837	25	2.3	24	82	5	62	32	1	3	62	1.22
45291439--45291471	10	3.4	10	83	8	50	54	0	0	45	0.99
45292206--45292234	3	9.7	3	100	0	58	34	31	0	34	1.58
45298290--45298370	40	2.0	40	100	0	162	41	13	7	37	1.73
45301002--45301061	23	2.6	23	76	10	68	8	13	8	70	1.35
45310097--45310279	79	2.3	81	84	7	232	24	22	27	25	2.00
45310098--45310281	40	4.6	40	83	9	216	23	22	28	25	2.00
45310150--45310314	79	2.1	79	84	6	210	25	21	27	25	1.99
45318164--45318269	40	2.6	41	81	8	128	24	22	27	25	2.00
45318216--45318302	40	2.2	40	81	6	106	27	19	26	26	1.99
45332621--45332681	30	2.0	30	83	0	77	31	22	8	37	1.84
45334056--45334096	15	2.8	14	82	10	55	43	0	14	41	1.45
45335359--45335563	87	2.5	82	86	10	299	27	8	17	47	1.76
45335362--45335534	87	2.0	87	95	1	312	28	9	16	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45346370--45346512	57	2.5	56	77	8	137	29	22	15	32	1.95
45375281--45375453	46	3.8	45	79	10	197	21	19	30	28	1.98
45375274--45375445	93	1.8	93	92	0	290	20	20	30	28	1.98
45382638--45382681	21	2.1	21	91	0	70	31	20	9	38	1.84
45390341--45390384	21	2.2	20	84	12	54	79	4	0	15	0.89
45390357--45390388	15	2.2	14	94	5	55	81	0	0	18	0.70
45390355--45390388	10	3.3	10	88	8	50	82	0	0	17	0.67
45390553--45390588	18	2.0	18	100	0	72	50	5	5	38	1.49
45390654--45390693	17	2.4	17	100	0	80	47	17	7	27	1.74
45392034--45392083	25	2.0	25	92	0	82	40	0	14	46	1.44
45394433--45394573	55	2.5	55	89	3	203	35	17	14	31	1.91
45394602--45394812	88	2.4	89	87	4	293	32	20	19	27	1.97
45395097--45395272	71	2.5	70	86	5	223	32	23	14	28	1.94
45405199--45405248	25	2.0	25	92	0	82	40	0	14	46	1.44
45411913--45411946	15	2.4	14	90	5	50	0	11	2	85	0.71
45412015--45412084	26	2.8	26	80	4	72	30	14	10	45	1.77
45412533--45412578	21	2.2	21	96	0	83	63	0	0	36	0.95
45413824--45413915	48	1.9	48	86	0	130	11	16	28	43	1.83
45420697--45420784	22	4.0	22	82	2	88	17	23	14	44	1.86
45420724--45420794	22	3.2	22	83	0	79	22	26	11	39	1.88
45420746--45420805	22	2.8	22	84	2	77	23	25	11	40	1.88
45420811--45420856	22	2.1	22	91	0	74	23	28	13	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45424068--45424107	20	2.0	20	85	9	55	62	0	2	35	1.09
45424712--45424764	20	2.6	21	82	14	58	33	1	0	64	1.05
45426265--45426313	15	3.1	16	79	8	55	38	0	0	61	0.96
45427232--45427268	15	2.4	16	82	13	51	70	2	0	27	1.01
45430988--45431029	22	1.9	22	100	0	84	47	26	7	19	1.74
45431381--45431426	23	2.0	23	83	8	58	67	6	0	26	1.15
45432089--45432196	26	4.2	26	90	2	164	33	6	23	37	1.80
45433638--45433712	26	2.8	26	81	4	78	34	21	12	32	1.90
45433819--45433957	54	2.6	53	90	2	206	17	22	23	35	1.95
45433819--45433957	27	5.1	27	81	6	167	17	22	23	35	1.95
45433819--45433975	27	5.8	27	78	11	162	19	22	22	35	1.96
45440575--45440636	30	2.1	31	87	6	92	45	1	3	50	1.27
45443412--45443582	48	3.6	48	85	6	238	29	18	25	26	1.98
45446098--45446123	6	4.3	6	100	0	52	46	15	19	19	1.85
45446516--45446553	11	3.3	12	82	14	53	36	0	0	63	0.95
45446668--45446727	32	1.9	31	89	3	93	60	11	5	23	1.51
45447792--45447835	21	2.1	21	87	8	63	38	2	0	59	1.10
45459916--45459944	11	2.5	12	94	5	51	65	13	13	6	1.45
45463245--45463403	27	5.9	27	80	11	166	35	21	24	18	1.96
45463263--45463406	54	2.7	54	90	2	227	35	22	24	17	1.95
45471311--45471384	38	1.9	38	100	0	148	28	13	25	32	1.94
45472576--45472720	40	3.6	40	84	4	184	25	24	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45473693--45473735	21	2.0	21	100	0	86	41	11	23	23	1.87
45479896--45480322	40	10.7	40	93	0	703	30	19	26	22	1.98
45482014--45482124	40	2.8	39	82	5	116	25	21	28	24	1.99
45484934--45484965	14	2.3	14	100	0	64	31	46	15	6	1.71
45489994--45490025	14	2.3	14	94	0	55	28	46	15	9	1.77
45492976--45493113	40	3.5	40	90	3	208	23	28	23	24	2.00
45496534--45496652	43	2.8	42	86	5	150	32	26	17	23	1.97
45499973--45500042	33	2.1	33	94	0	122	40	12	25	21	1.89
45503946--45504090	40	3.6	40	85	4	193	23	26	24	25	2.00
45505279--45505352	37	2.0	37	94	5	132	32	21	13	32	1.92
45511949--45512116	40	4.2	40	83	4	106	25	27	23	23	2.00
45511972--45512116	40	3.6	40	85	4	193	23	26	24	25	2.00
45513304--45513379	38	2.0	38	94	0	134	31	21	13	34	1.91
45514021--45514074	21	2.6	21	81	0	63	22	33	3	40	1.71
45516451--45516510	21	3.0	21	71	26	67	36	13	15	35	1.86
45518638--45518694	27	2.1	28	83	3	71	26	19	14	40	1.89
45521081--45521106	9	2.9	9	100	0	52	46	23	19	11	1.82
45530658--45530722	28	2.3	28	91	0	103	32	27	7	32	1.85
45530828--45530918	28	3.2	28	90	4	139	20	24	23	31	1.98
45531372--45531412	18	2.3	18	86	0	55	24	2	4	68	1.22
45538803--45538846	2	22.0	2	100	0	88	0	0	50	50	1.00
45539002--45539058	15	3.9	15	88	2	89	35	0	12	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45538998--45539056	30	2.0	28	93	6	100	32	0	11	55	1.36
45539433--45539517	21	3.9	23	75	12	88	17	20	23	38	1.93
45539430--45539517	42	2.0	43	84	4	115	18	20	22	38	1.93
45539679--45539719	19	2.2	19	87	12	59	46	0	24	29	1.53
45541819--45541961	43	3.3	43	78	12	143	31	24	19	24	1.98
45548581--45548640	30	2.0	30	100	0	120	30	13	23	33	1.93
45561415--45561638	104	2.2	104	93	1	378	31	31	19	17	1.95
45561967--45562030	30	2.2	29	81	10	76	29	28	6	35	1.82
45561974--45562030	30	1.9	30	85	3	80	29	24	7	38	1.82
45568899--45569049	71	2.1	72	91	2	243	30	29	17	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352