Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  325  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105179200--105179492
40
7.3
40
93
2
500
18
18
28
34
1.94
105187117--105187389
40
6.8
40
95
0
483
19
20
28
32
1.96
105189486--105189763
46
6.0
46
88
4
371
21
23
15
38
1.92
105193681--105196482
560
5.0
560
91
0
4417
40
21
17
20
1.92
105201970--105202116
40
3.7
40
84
3
181
31
29
21
17
1.96
105201959--105202116
78
2.0
80
83
2
203
31
30
21
17
1.96
105202098--105202215
24
5.4
23
69
19
83
34
27
19
18
1.95
105202060--105202240
62
2.9
62
87
3
265
34
27
19
18
1.95
105202009--105202293
100
2.8
102
79
11
304
34
28
19
17
1.94
105202184--105202297
38
3.0
38
82
0
147
36
28
18
16
1.93
105203416--105203467
24
2.2
24
82
0
59
55
3
7
32
1.46
105209205--105209242
20
1.9
20
100
0
76
26
26
13
34
1.93
105209744--105209795
24
2.2
24
92
0
86
51
7
3
36
1.49
105211939--105211995
27
2.2
26
81
9
64
28
5
7
59
1.45
105212009--105212075
29
2.3
28
80
16
82
35
1
0
62
1.04
105211966--105212123
22
7.0
23
67
20
54
33
3
1
60
1.25
105212243--105212304
5
12.8
5
71
19
51
35
1
1
61
1.16
105212244--105212292
17
2.9
17
75
9
55
36
2
0
61
1.08
105212251--105212318
34
2.0
33
88
2
100
33
2
1
61
1.20
105212220--105212314
14
6.4
15
74
16
83
32
4
1
62
1.22
105224176--105225097
289
3.2
289
96
0
1693
31
17
21
30
1.96
105224847--105225303
206
2.2
206
95
0
815
30
16
21
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105224551--105225592
495
2.1
496
96
0
1915
31
17
21
30
1.96
105224262--105226666
785
3.1
783
90
3
3555
31
17
21
30
1.96
105225053--105226171
289
3.9
289
96
0
2049
31
17
21
30
1.96
105225053--105226171
579
1.9
578
96
0
2085
31
17
21
30
1.96
105225921--105226374
206
2.2
206
96
0
827
30
16
21
31
1.96
105226127--105227389
289
4.4
289
95
0
2161
30
17
21
30
1.96
105225631--105226666
495
2.1
496
96
0
1885
30
17
21
30
1.96
105229085--105229169
24
3.5
25
81
12
90
32
2
2
62
1.21
105229106--105229166
19
3.1
19
76
19
61
34
1
0
63
1.04
105229109--105229168
17
3.2
17
76
19
57
35
1
0
63
1.05
105229283--105229309
14
1.9
14
100
0
54
37
3
0
59
1.15
105229275--105229341
34
2.0
33
88
5
100
34
2
1
61
1.20
105229275--105229341
17
4.1
16
77
7
62
34
2
1
61
1.20
105230181--105230216
18
2.0
18
100
0
72
16
22
16
44
1.86
105230884--105230950
17
3.9
17
75
19
68
62
0
1
35
1.04
105231428--105231525
18
5.5
18
86
7
139
37
11
11
39
1.77
105231428--105231534
35
3.0
35
90
4
160
38
12
10
39
1.77
105231922--105232271
83
4.2
83
92
0
574
26
20
20
32
1.97
105232195--105232669
119
4.0
119
93
0
770
29
18
17
33
1.94
105232661--105232840
44
4.1
44
75
8
186
28
24
16
31
1.96
105236350--105236380
14
2.1
15
94
5
55
51
3
6
38
1.44
105239483--105239538
15
3.6
16
76
9
62
60
0
1
37
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105239487--105239576
39
2.3
40
83
9
105
56
0
5
37
1.23
105240023--105240155
18
7.5
17
86
5
176
36
12
10
39
1.78
105240023--105240164
35
4.0
35
93
2
230
37
13
9
39
1.78
105245093--105245141
19
2.4
21
76
13
57
55
6
2
36
1.37
105245484--105245540
26
2.2
25
81
9
62
61
10
0
28
1.29
105245493--105245557
25
2.7
23
79
11
67
58
9
3
29
1.44
105245778--105245831
25
2.1
26
82
3
65
70
3
3
22
1.19
105247584--105247892
90
3.5
87
82
7
308
38
19
14
27
1.91
105250777--105250942
35
4.6
35
81
7
197
34
24
10
30
1.90
105250772--105250920
75
2.0
74
85
1
199
34
22
12
30
1.91
105266507--105266540
12
2.9
12
86
4
52
32
0
0
67
0.91
105266664--105266726
30
2.1
30
96
0
117
57
12
3
26
1.51
105271101--105271127
12
2.2
12
100
0
54
0
0
7
92
0.38
105280212--105280239
10
2.8
10
100
0
56
71
0
7
21
1.09
105283795--105283848
27
2.0
28
85
3
74
33
22
18
25
1.97
105283818--105284009
56
3.4
56
72
6
138
35
20
13
31
1.90
105286071--105286110
10
3.9
10
93
3
62
52
5
0
42
1.23
105286071--105286119
20
2.4
21
83
10
66
53
4
0
42
1.20
105287828--105287869
4
10.8
4
79
5
50
23
0
4
71
1.05
105289380--105289413
15
2.3
15
90
5
52
32
0
0
67
0.91
105293592--105293717
38
3.3
38
88
4
173
33
26
21
18
1.96
105296373--105296418
13
3.1
15
72
15
51
60
2
8
28
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105298555--105298607
24
2.2
24
86
6
72
43
11
7
37
1.69
105298567--105298618
24
2.2
24
86
6
70
48
7
7
36
1.61
105313559--105313588
7
4.1
7
95
4
51
40
0
13
46
1.43
105318917--105319024
26
4.2
26
93
0
189
32
6
25
36
1.81
105320639--105320754
27
4.3
27
87
1
160
19
24
22
33
1.97
105320637--105320778
27
5.3
26
85
5
149
19
23
21
35
1.96
105320650--105320778
54
2.4
54
86
2
170
20
24
20
34
1.96
105320840--105320878
19
1.9
20
85
15
53
20
2
43
33
1.65
105323554--105323595
17
2.7
16
82
10
52
30
0
0
69
0.89
105323593--105323633
20
2.0
21
85
9
57
65
2
0
31
1.05
105323691--105323725
18
1.9
18
94
0
61
48
2
0
48
1.16
105323731--105323784
27
2.0
28
85
3
74
46
1
0
51
1.11
105323765--105323873
33
3.5
32
73
19
113
50
2
0
46
1.15
105323791--105323835
11
4.1
11
81
18
58
46
2
0
51
1.13
105323801--105323857
27
2.3
25
88
11
82
47
3
0
49
1.18
105323863--105323913
21
2.4
21
93
0
84
56
1
0
41
1.10
105323896--105323945
23
2.2
23
85
7
66
46
0
6
48
1.27
105324461--105324499
19
2.0
20
90
5
62
56
2
7
33
1.41
105324817--105324885
22
3.2
22
68
10
61
65
2
11
20
1.38
105326625--105326706
25
3.2
25
61
19
60
43
10
12
32
1.77
105326608--105326712
52
2.0
52
100
0
210
45
9
11
33
1.73
105327631--105327913
93
3.1
91
86
5
374
47
18
11
22
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105332563--105332616
7
7.7
7
87
8
74
33
0
0
66
0.92
105332563--105332616
21
2.5
22
88
5
85
33
0
0
66
0.92
105336570--105336601
5
6.6
5
92
7
57
81
0
0
18
0.70
105336571--105336601
14
2.2
14
100
0
62
80
0
0
19
0.71
105341011--105341042
5
6.6
5
92
7
57
81
0
0
18
0.70
105341012--105341042
14
2.2
14
100
0
62
80
0
0
19
0.71
105351478--105351535
31
1.9
30
82
3
71
55
13
3
27
1.55
105352087--105352120
17
2.0
17
88
0
50
58
0
35
5
1.22
105352092--105352136
22
2.0
22
82
4
54
53
0
44
2
1.13
105352773--105352805
15
2.2
15
89
10
50
42
0
6
51
1.26
105360019--105360061
15
2.9
14
82
6
50
76
0
6
16
0.99
105360189--105360213
12
2.1
12
100
0
50
24
36
24
16
1.94
105360374--105360434
9
6.8
9
96
0
104
37
29
9
22
1.87
105376385--105376427
12
3.5
12
87
3
59
62
0
18
18
1.32
105376386--105376420
18
1.9
18
88
0
52
62
0
20
17
1.32
105385184--105385234
22
2.4
20
78
18
50
60
9
1
27
1.39
105385345--105385403
25
2.4
24
80
5
64
28
3
3
64
1.26
105388892--105388928
11
3.1
12
92
7
58
0
51
0
48
1.00
105389390--105389460
3
23.3
3
71
8
54
30
2
5
60
1.34
105389403--105389463
23
2.8
22
85
5
70
32
3
8
55
1.45
105389426--105389471
23
2.0
23
83
8
58
30
2
10
56
1.46
105389705--105389741
19
1.9
19
88
0
56
40
2
5
51
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105392138--105392182
3
15.0
3
100
0
90
66
0
0
33
0.92
105392560--105392627
29
2.3
31
84
5
86
30
10
14
44
1.79
105417726--105417779
28
1.9
28
85
7
74
62
0
1
35
1.06
105422631--105422682
25
2.0
26
85
3
70
25
13
23
38
1.91
105424163--105424245
26
3.2
25
93
5
139
36
25
4
33
1.77
105428412--105428464
26
2.0
27
85
7
74
24
15
22
37
1.92
105429951--105430008
26
2.2
26
96
0
107
36
22
5
36
1.77
105430589--105430614
5
5.2
5
100
0
52
23
0
0
76
0.78
105430915--105430995
12
6.7
12
75
10
67
35
6
0
58
1.23
105430902--105430995
25
3.9
23
75
19
77
35
5
0
59
1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352