genome.fa.s11.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  100  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31652821--31652847	12	2.2	12	100	0	54	33	7	18	40	1.78
31654239--31654282	23	1.9	23	95	0	79	20	20	15	43	1.88
31667389--31667655	94	2.9	91	76	9	254	23	29	20	27	1.99
31667530--31667655	47	2.7	47	78	12	143	23	30	19	26	1.98
31670406--31670780	185	2.0	185	95	0	669	35	22	13	28	1.92
31679627--31679784	39	4.1	39	92	0	262	27	23	21	27	1.99
31688020--31688177	39	4.1	39	94	0	271	27	24	20	26	1.99
31696420--31696536	29	4.3	29	77	15	108	32	23	17	26	1.97
31698121--31698162	7	6.0	7	91	0	57	40	4	30	23	1.75
31699101--31699131	9	3.4	9	95	0	53	32	0	9	58	1.31
31699864--31699969	49	2.1	51	96	3	198	33	9	7	49	1.64
31713421--31713642	40	5.6	40	91	1	331	27	23	27	22	1.99
31719482--31719660	39	4.6	40	82	7	206	25	26	23	25	2.00
31719482--31719660	79	2.3	79	85	3	227	25	26	23	25	2.00
31727435--31727615	40	4.6	40	84	4	224	24	26	23	24	2.00
31727435--31727615	81	2.3	79	86	2	238	24	26	23	24	2.00
31739916--31740038	38	3.4	36	84	13	116	26	28	21	23	1.99
31739943--31740170	38	5.9	39	81	11	215	26	28	21	23	1.99
31739943--31740170	75	3.0	78	81	10	265	26	28	21	23	1.99
31744378--31744588	40	5.3	40	91	2	338	26	23	27	22	2.00
31744378--31744588	79	2.7	80	90	3	347	26	23	27	22	2.00
31746337--31746367	16	1.9	16	100	0	62	48	19	19	12	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31746605--31746673	28	2.4	29	95	2	122	26	14	31	27	1.95
31746971--31747099	27	4.8	27	79	9	113	41	24	10	24	1.85
31753785--31753900	55	2.1	55	83	0	142	13	27	31	26	1.94
31753785--31753919	55	2.5	55	79	7	139	14	24	31	30	1.94
31761714--31761774	31	2.0	31	100	0	122	27	22	9	39	1.86
31764583--31764631	24	2.0	24	88	0	71	32	22	16	28	1.95
31767256--31767341	43	2.0	43	95	0	154	29	6	12	51	1.66
31767377--31767476	40	2.5	40	81	0	119	19	17	28	36	1.93
31767484--31767537	28	1.9	28	92	0	90	27	12	29	29	1.94
31773321--31773380	26	2.3	27	80	11	72	15	13	3	68	1.34
31774894--31774945	24	2.2	24	85	0	68	21	13	19	46	1.84
31792998--31793052	29	1.9	28	92	3	92	18	20	29	32	1.96
31800259--31800438	49	3.8	48	80	10	210	21	30	20	28	1.98
31805014--31805093	42	1.9	42	82	5	99	22	33	26	17	1.96
31811928--31811973	17	2.7	17	80	6	58	21	19	19	39	1.93
31821476--31821521	17	2.7	17	80	6	58	19	19	21	39	1.93
31847921--31847993	20	3.7	20	80	7	85	10	26	21	41	1.86
31848949--31848996	20	2.5	20	86	3	62	64	2	6	27	1.28
31849500--31849552	24	2.2	24	86	0	70	39	9	15	35	1.79
31854009--31854386	27	14.0	26	89	3	470	35	18	19	26	1.95
31854612--31854721	27	4.0	28	88	3	145	20	21	20	37	1.95
31855024--31855080	27	2.1	27	87	6	80	15	22	24	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31855225--31855287	31	2.0	31	84	0	81	25	20	7	46	1.78
31855268--31855308	6	6.8	6	82	0	55	19	17	12	51	1.76
31855246--31855308	12	5.2	12	75	11	56	23	19	7	49	1.74
31858049--31858990	468	2.0	470	88	2	1383	35	11	22	30	1.90
31862638--31862769	48	2.7	48	89	2	192	18	16	30	34	1.93
31868813--31868868	29	1.9	29	81	0	67	37	10	10	41	1.75
31869059--31869115	24	2.4	24	100	0	114	12	0	29	57	1.35
31869121--31869210	28	3.2	28	91	1	135	48	1	15	34	1.52
31869353--31870097	126	5.9	126	83	3	804	41	13	17	27	1.87
31876190--31876228	20	2.0	20	89	0	60	48	2	12	35	1.55
31885759--31885836	37	2.1	36	85	2	102	26	32	16	24	1.96
31885955--31886493	47	11.1	49	90	4	787	28	30	9	31	1.88
31885966--31886490	98	5.4	98	92	3	814	28	30	9	31	1.89
31890127--31890157	16	1.9	16	93	0	53	48	16	25	9	1.76
31895209--31895239	2	15.5	2	100	0	62	51	0	48	0	1.00
31907793--31907892	29	3.5	29	84	1	130	26	15	31	28	1.95
31907793--31907901	57	1.9	58	86	1	157	27	14	30	27	1.95
31912320--31912370	21	2.5	21	81	6	61	56	1	5	35	1.35
31912485--31912558	36	2.1	34	82	9	87	63	1	5	29	1.25
31912744--31912769	9	2.9	9	100	0	52	34	0	7	57	1.27
31916157--31916187	14	2.3	13	94	5	53	51	0	3	45	1.17
31922427--31922716	48	6.0	48	91	0	463	36	6	25	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31922846--31922966	37	3.3	37	95	0	215	23	17	32	26	1.97
31926373--31926493	64	1.9	65	87	1	181	21	24	4	48	1.70
31935461--31936028	294	1.9	294	87	2	836	29	15	21	32	1.95
31942239--31942398	42	3.8	42	79	2	178	31	13	23	31	1.93
31942249--31942407	85	1.9	84	84	1	210	30	14	23	31	1.94
31956084--31956271	40	4.7	40	91	0	306	27	22	26	23	2.00
31956084--31956294	80	2.7	79	87	2	309	27	22	26	23	1.99
31961768--31961812	22	2.0	22	83	8	56	35	17	8	37	1.81
31974126--31974163	18	2.1	18	100	0	76	47	0	26	26	1.52
31974129--31974170	18	2.3	18	91	0	66	40	4	28	26	1.76
31976512--31976610	44	2.2	44	83	0	126	21	18	30	30	1.97
31976581--31976708	49	2.6	49	83	4	161	27	22	27	22	1.99
31976688--31976758	32	2.2	32	100	0	142	23	25	18	32	1.97
31977194--31977233	21	2.0	20	90	5	62	10	37	30	22	1.87
31983384--31983502	46	2.6	46	85	5	152	31	16	26	24	1.96
31983570--31983695	49	2.6	49	88	3	173	27	23	29	19	1.98
31984876--31984918	21	2.0	21	100	0	86	9	39	27	23	1.85
31990691--31990752	24	2.5	24	82	7	63	67	4	1	25	1.19
31991362--31991439	30	2.6	30	87	4	104	28	0	2	69	1.02
31991360--31991451	15	5.9	16	72	10	66	27	0	3	69	1.04
31991880--31991942	27	2.2	28	75	10	67	60	1	1	36	1.16
32000152--32000364	47	4.7	47	76	11	230	31	13	23	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32000191--32000397	85	2.4	85	92	0	351	30	13	24	31	1.93
32003332--32003357	3	8.7	3	100	0	52	30	34	0	34	1.58
32004867--32005020	60	2.6	58	78	7	168	20	18	15	46	1.85
32005543--32005594	26	2.0	27	84	3	70	61	7	7	23	1.49
32006044--32006096	22	2.5	22	84	3	72	13	5	16	64	1.47
32006901--32006925	10	2.5	10	100	0	50	44	12	0	44	1.41
32007384--32007421	15	2.5	15	100	0	76	39	0	21	39	1.53
32010883--32010996	38	3.0	38	84	0	120	35	14	13	37	1.84
32012611--32012802	40	4.8	40	88	4	210	27	28	20	23	1.99
32018950--32018996	24	2.0	24	86	0	67	29	14	6	48	1.69
32023742--32023768	14	1.9	14	100	0	54	22	48	0	29	1.51
32025930--32025983	25	2.1	26	89	3	83	57	0	1	40	1.09
32028109--32028245	59	2.3	58	78	15	138	34	6	14	44	1.71
32031869--32032181	39	8.0	39	89	2	400	31	29	20	18	1.96
32034737--32034914	51	3.5	51	89	4	245	25	31	15	27	1.95
32038314--32038421	26	4.2	26	91	2	164	34	8	23	34	1.85
32041117--32041158	16	2.6	17	77	11	52	57	9	4	28	1.51
32045003--32045045	16	2.6	17	77	7	52	58	9	4	27	1.49
32046103--32046209	26	4.2	26	90	3	155	34	8	22	34	1.84
32047763--32047802	21	1.9	21	90	10	64	17	15	20	47	1.83
32048907--32048949	16	2.6	17	77	7	52	58	9	4	27	1.49
32052965--32053058	26	3.8	24	83	8	109	35	4	24	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32052965--32053068	25	4.2	26	89	7	162	33	5	24	36	1.79
32052965--32053068	51	2.1	49	94	3	181	33	5	24	36	1.79
32059779--32059886	26	4.2	26	92	0	180	32	8	24	35	1.85
32063485--32063662	52	3.5	50	82	4	214	27	28	15	29	1.96
32063485--32063662	51	3.5	52	84	6	224	27	28	15	29	1.96
32064857--32064967	44	2.5	44	92	2	186	36	24	18	20	1.94
32077254--32077293	18	2.2	19	90	4	64	40	2	0	57	1.12
32083265--32083363	51	1.9	52	89	6	157	43	1	6	49	1.34
32085170--32085288	63	1.9	63	82	0	148	32	33	6	26	1.83
32085461--32085522	30	2.1	30	93	0	106	29	25	20	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352