Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  171  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55886733--55886774
18
2.3
19
87
4
59
16
26
0
57
1.40
55888489--55888580
43
2.1
43
95
0
166
27
28
27
17
1.98
55889469--55889599
47
2.8
47
86
0
172
33
28
15
22
1.94
55899543--55899582
21
2.0
21
90
5
64
75
10
10
5
1.19
55899609--55899642
16
2.2
16
94
5
61
79
0
20
0
0.73
55900345--55900381
18
2.1
18
94
0
65
51
0
24
24
1.49
55900345--55900381
12
3.1
12
84
0
56
51
0
24
24
1.49
55900345--55900394
18
2.8
19
82
11
61
48
0
24
28
1.52
55914435--55914463
14
2.1
14
100
0
58
27
20
20
31
1.98
55918866--55918936
37
1.9
36
83
8
90
64
4
1
29
1.20
55921823--55921878
21
2.8
21
81
5
71
35
26
0
37
1.57
55924375--55924421
24
2.0
24
95
0
85
23
25
14
36
1.93
55931159--55931191
17
2.0
17
94
5
59
36
15
0
48
1.45
55931477--55931795
46
7.0
45
79
7
320
21
22
14
42
1.88
55931477--55931790
92
3.4
92
84
4
384
21
22
14
42
1.88
55933872--55933896
8
3.1
8
100
0
50
76
0
0
24
0.80
55940056--55940134
29
2.7
29
86
5
106
27
32
15
24
1.95
55940578--55940602
12
2.1
12
100
0
50
44
0
8
48
1.32
55943165--55943199
17
2.1
17
100
0
70
48
22
17
11
1.79
55953096--55953174
33
2.4
33
97
0
149
25
32
12
29
1.93
55970306--55970349
4
11.0
4
100
0
88
25
0
25
50
1.50
55973174--55973211
16
2.6
14
88
12
51
34
7
7
50
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55975768--55975862
4
23.8
4
84
0
91
27
14
23
34
1.94
55975765--55975865
16
6.3
16
87
0
130
26
13
22
36
1.92
55975765--55975865
8
12.6
8
82
0
112
26
13
22
36
1.92
55982212--55982245
17
1.9
17
94
5
59
76
0
23
0
0.79
55986633--55986673
20
2.0
20
90
0
64
46
24
14
14
1.82
55991087--55991122
16
2.2
16
90
9
56
77
0
0
22
0.76
55991087--55991126
18
2.4
17
87
8
55
75
0
0
25
0.81
55992577--55992626
13
3.9
13
84
2
66
60
6
2
32
1.32
55999260--55999500
121
2.0
121
96
0
448
39
9
1
49
1.45
56002829--56002995
46
3.6
45
75
18
137
29
16
28
24
1.97
56002923--56003036
46
2.5
44
83
8
133
29
17
28
23
1.97
56002875--56003137
50
5.5
50
75
13
200
30
16
30
23
1.96
56005524--56005561
20
1.9
20
94
0
67
50
0
5
44
1.24
56006363--56006436
31
2.4
30
91
4
130
39
6
14
39
1.73
56008737--56008877
77
2.0
71
80
17
159
42
7
5
43
1.57
56008804--56008931
67
1.9
67
83
3
168
39
8
7
45
1.62
56012333--56012373
21
1.9
22
85
5
57
31
21
2
43
1.66
56016127--56016165
16
2.4
16
86
0
51
35
0
7
56
1.28
56019236--56019347
54
2.1
55
96
1
208
57
7
10
25
1.58
56023348--56023905
281
2.0
280
93
1
947
33
12
16
37
1.86
56028428--56028515
22
4.0
22
87
0
113
29
11
14
44
1.80
56029352--56029432
30
2.7
30
76
14
87
56
9
0
33
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56029771--56029838
30
2.3
30
76
0
73
27
22
16
33
1.95
56043030--56043069
17
2.3
19
76
24
52
40
5
12
42
1.64
56047336--56047381
22
2.1
22
100
0
92
60
4
17
17
1.51
56049938--56050492
3
183.3
3
70
12
221
27
8
3
60
1.43
56050225--56050269
23
2.0
23
81
0
54
31
6
4
57
1.44
56053245--56053271
5
5.4
5
100
0
54
0
18
0
81
0.69
56058064--56058100
6
6.2
6
96
0
65
64
0
0
35
0.94
56060139--56060193
20
2.9
18
76
15
58
36
0
1
61
1.06
56063859--56063950
17
5.1
18
74
18
84
48
10
10
29
1.72
56065398--56065513
30
3.9
30
77
6
105
43
3
23
29
1.70
56065509--56065542
14
2.4
15
90
9
54
26
0
2
70
1.01
56065784--56066164
54
7.1
54
91
4
601
38
18
15
28
1.91
56065784--56066164
110
3.5
107
91
4
590
38
18
15
28
1.91
56065784--56066164
164
2.4
159
91
4
622
38
18
15
28
1.91
56066143--56066177
14
2.5
14
90
0
52
60
2
17
20
1.49
56066240--56066268
15
1.9
15
100
0
58
72
6
6
13
1.26
56066146--56066335
106
1.8
105
82
7
251
40
18
16
25
1.91
56066424--56066457
16
2.1
16
94
0
59
67
5
8
17
1.37
56066251--56066767
178
3.0
175
79
11
499
37
19
17
26
1.93
56066251--56066708
87
5.2
87
82
6
489
38
18
17
25
1.92
56066601--56066635
14
2.5
14
85
0
52
60
5
20
14
1.54
56066615--56068351
75
23.0
75
76
12
1269
32
20
16
31
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56066621--56068609
156
13.1
148
80
11
1843
32
19
16
31
1.94
56067137--56067301
85
1.9
85
85
0
222
33
16
16
33
1.91
56066679--56068609
524
3.6
526
86
6
2473
32
19
16
31
1.94
56067590--56067822
84
2.8
84
86
3
308
35
21
14
28
1.93
56066649--56068591
693
2.8
677
87
5
2775
32
19
16
31
1.94
56067759--56068351
76
7.9
71
73
13
354
31
20
16
32
1.95
56067830--56067994
85
1.9
85
87
0
240
33
16
16
33
1.92
56068270--56068521
85
2.9
86
78
9
291
32
19
14
33
1.92
56068444--56068609
70
2.3
72
86
5
237
35
18
15
30
1.92
56070186--56070223
14
2.6
14
91
8
58
0
18
2
78
0.86
56075181--56075235
3
18.3
3
100
0
110
67
0
0
32
0.91
56076010--56076126
30
4.0
29
80
6
119
45
3
20
30
1.68
56075997--56076126
60
2.2
59
79
4
145
44
3
19
33
1.66
56076121--56076154
13
2.5
13
90
4
50
23
0
0
76
0.79
56076235--56076381
52
2.8
52
88
3
206
30
28
15
25
1.96
56079032--56079082
22
2.4
22
80
3
59
11
33
39
15
1.84
56079648--56079706
30
2.0
30
96
0
109
47
0
32
20
1.50
56080549--56080603
20
2.9
18
76
15
58
36
0
1
61
1.06
56081594--56081626
11
3.1
11
86
4
50
36
0
0
63
0.95
56081750--56081811
30
2.1
30
90
0
97
61
6
3
29
1.37
56083400--56083429
15
2.0
15
93
0
51
50
0
10
40
1.36
56083396--56083458
27
2.3
26
76
10
63
38
0
11
50
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56083454--56083485
10
3.3
10
95
4
57
31
6
0
62
1.20
56088935--56089011
38
2.0
38
89
0
118
19
40
18
22
1.92
56092685--56092804
63
1.9
64
84
5
163
51
7
7
33
1.58
56093132--56093183
21
2.5
22
81
9
63
42
30
11
15
1.82
56207304--56207412
43
2.6
42
81
8
123
26
16
29
27
1.97
56208388--56208417
13
2.3
13
94
0
51
0
23
43
33
1.54
56211395--56211445
22
2.4
22
80
3
59
11
33
39
15
1.84
56212009--56212067
30
2.0
30
96
0
109
47
0
32
20
1.50
56212908--56212962
20
2.9
18
76
15
58
36
0
1
61
1.06
56213950--56213982
11
3.1
11
86
4
50
36
0
0
63
0.95
56214106--56214167
30
2.1
30
90
0
97
61
6
3
29
1.37
56215755--56215784
15
2.0
15
93
0
51
50
0
10
40
1.36
56215751--56215813
27
2.3
26
76
10
63
38
0
11
50
1.38
56221290--56221366
38
2.0
38
89
0
118
19
40
18
22
1.92
56225033--56225152
63
1.9
64
84
5
163
51
7
7
33
1.58
56227825--56227862
18
2.1
18
100
0
76
47
18
5
28
1.70
56243733--56243775
21
2.0
21
90
0
68
39
30
4
25
1.76
56243930--56244187
45
5.5
44
80
13
209
23
30
18
27
1.97
56243930--56244187
139
1.9
140
86
5
380
23
30
18
27
1.97
56243928--56244195
94
2.9
94
79
11
311
24
30
18
26
1.98
56244634--56244693
30
2.0
30
86
0
84
28
1
13
56
1.47
56248401--56248430
15
2.1
14
93
6
51
70
0
23
6
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56253962--56254043
42
2.0
42
85
0
110
30
28
13
28
1.94
56253964--56254052
42
2.1
42
80
0
97
30
30
13
25
1.94
56255429--56255461
13
2.6
13
90
4
50
39
0
12
48
1.40
56258625--56258664
20
2.0
21
90
9
66
42
10
0
47
1.37
56258706--56258834
49
2.7
48
83
8
165
41
6
1
50
1.39
56260844--56261013
46
3.7
47
73
13
172
22
20
28
29
1.98
56260835--56261005
93
1.8
93
89
2
272
22
21
28
28
1.99
56265592--56265653
13
4.8
13
78
4
63
38
24
3
33
1.71
56265600--56265653
12
4.3
12
77
9
63
40
22
3
33
1.71
56268291--56268351
21
3.0
21
87
2
79
24
21
36
18
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352