genome.fa.s11.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  169  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55314597--55314751	42	3.7	42	82	1	166	30	16	23	29	1.96
55314640--55314751	43	2.6	42	81	2	134	29	17	24	28	1.97
55317226--55317803	44	12.7	44	67	14	206	36	17	19	27	1.93
55317128--55317758	92	6.8	92	84	4	630	36	17	18	27	1.93
55317128--55317707	183	3.1	183	82	4	675	37	17	17	27	1.92
55317223--55317735	274	1.9	272	84	2	679	37	17	18	27	1.93
55322831--55322889	25	2.4	25	91	0	91	25	22	22	30	1.99
55331776--55331865	42	2.1	42	100	0	180	10	22	6	61	1.51
55342089--55342264	87	2.0	87	96	0	325	25	23	20	30	1.98
55346828--55346853	6	4.3	6	100	0	52	15	0	0	84	0.62
55347859--55347919	4	15.2	4	100	0	122	50	24	0	24	1.49
55359335--55359584	125	2.0	125	96	0	464	32	8	18	40	1.80
55364552--55364584	17	2.0	17	88	5	50	63	6	0	30	1.18
55366216--55366382	91	1.8	91	84	5	230	34	18	19	27	1.95
55366485--55366699	74	2.9	73	84	4	277	30	20	16	33	1.94
55366478--55367574	75	14.0	75	70	14	549	32	19	16	31	1.94
55366952--55367572	78	8.0	72	76	15	442	32	19	16	31	1.94
55367036--55367189	84	1.8	84	90	2	247	33	18	16	30	1.94
55366788--55367737	157	5.9	160	81	9	982	33	18	16	31	1.93
55366216--55367737	478	3.2	477	81	11	1650	33	18	16	31	1.94
55367110--55367574	78	6.0	78	83	7	511	32	19	16	32	1.94
55366222--55367737	635	2.4	629	85	7	1945	33	18	16	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55367505--55367669	90	1.8	90	92	2	278	32	18	16	32	1.93
55367590--55367750	76	2.2	75	90	3	254	32	18	17	31	1.94
55367430--55367743	166	1.9	165	87	3	459	31	18	16	33	1.93
55368753--55368860	45	2.4	45	90	1	171	42	21	16	19	1.89
55368757--55368887	45	3.2	39	80	15	131	40	21	18	19	1.92
55369062--55369149	40	2.2	40	84	9	110	37	18	7	36	1.80
55373891--55373960	35	2.0	35	91	0	113	20	30	14	35	1.92
55380522--55380553	15	2.0	17	88	11	50	62	6	0	31	1.20
55381234--55381272	15	2.6	15	95	0	69	58	5	20	15	1.55
55382005--55382034	6	5.0	6	100	0	60	16	0	0	83	0.65
55387885--55388059	88	2.0	90	88	2	264	28	4	11	56	1.52
55390350--55390709	47	7.6	49	75	16	262	24	31	18	26	1.98
55390684--55390735	26	2.0	26	96	0	95	21	30	21	26	1.98
55396960--55397006	20	2.3	21	96	3	87	21	25	40	12	1.89
55398044--55398408	47	7.7	47	75	11	241	24	28	19	27	1.99
55398283--55398456	94	1.9	92	83	9	228	22	28	20	28	1.98
55400907--55400944	18	2.1	18	85	9	51	65	0	13	21	1.26
55400902--55400962	23	2.6	23	84	7	79	65	0	11	22	1.24
55401006--55401095	33	2.7	32	82	5	99	62	1	17	18	1.40
55401034--55401096	5	11.8	5	86	9	81	60	0	20	19	1.37
55401033--55401095	28	2.3	27	91	5	101	61	0	20	17	1.34
55401034--55401096	22	3.0	21	86	11	92	60	0	20	19	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55401650--55401709	21	2.8	20	76	20	59	20	8	1	70	1.22
55401699--55401890	5	36.6	5	68	20	83	23	15	0	60	1.38
55401672--55401726	17	3.2	17	80	14	60	18	10	1	69	1.27
55401712--55401801	11	7.9	12	69	24	61	27	16	1	54	1.49
55401712--55401805	28	3.4	28	87	0	143	27	17	1	54	1.50
55401712--55401755	23	1.9	23	86	9	63	25	15	2	56	1.51
55401752--55401806	17	3.6	16	72	27	57	30	18	0	50	1.47
55401796--55401888	18	4.9	19	78	16	104	20	12	0	66	1.24
55401869--55401922	25	2.2	25	86	0	72	33	7	0	59	1.25
55401657--55401929	138	2.0	135	79	11	295	26	12	0	60	1.38
55402087--55402160	18	4.2	17	75	16	62	21	17	1	59	1.45
55402155--55402217	18	3.3	20	89	10	105	23	7	0	68	1.16
55406222--55406365	24	6.0	24	87	4	202	27	20	22	29	1.99
55406415--55406461	20	2.3	20	96	0	85	34	21	10	34	1.88
55411285--55411359	29	2.6	29	97	0	141	46	13	13	26	1.80
55420121--55420158	11	3.3	12	82	10	53	50	0	0	50	1.00
55420229--55420253	13	1.9	13	100	0	50	60	0	0	40	0.97
55421215--55421287	31	2.3	32	86	6	96	27	17	17	36	1.93
55422756--55422807	26	2.0	27	82	17	65	30	0	3	65	1.10
55423843--55423890	24	2.0	24	91	0	78	52	18	14	14	1.75
55426218--55426362	79	1.9	76	88	4	218	56	8	6	28	1.54
55428973--55429091	60	2.0	60	93	3	204	54	12	0	32	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55432211--55432286	25	3.0	25	75	7	82	40	15	23	19	1.90
55433038--55433137	42	2.4	42	83	3	105	20	30	28	22	1.98
55433945--55434098	24	6.5	24	69	12	84	32	20	26	20	1.97
55437149--55437252	47	2.2	47	82	3	129	35	25	18	21	1.95
55437149--55437287	47	2.9	48	80	9	124	35	24	18	20	1.95
55438709--55438765	23	2.5	23	83	8	64	42	8	5	43	1.58
55438986--55439023	3	12.7	3	94	0	67	65	2	0	31	1.06
55440118--55440155	13	2.8	13	88	11	51	47	2	0	50	1.15
55440253--55440330	38	2.1	38	92	0	129	33	8	20	37	1.84
55458854--55459010	43	3.7	43	77	9	151	25	19	26	28	1.98
55461927--55462098	93	1.8	93	93	0	299	27	29	22	21	1.99
55461919--55462094	46	3.8	46	80	10	214	28	28	21	21	1.99
55461970--55462113	46	3.1	46	71	18	136	29	27	20	22	1.98
55471070--55471096	13	2.1	13	100	0	54	37	0	0	62	0.95
55473842--55473875	17	1.9	18	88	5	52	32	8	0	58	1.29
55480914--55481051	49	2.8	49	81	10	158	23	29	19	26	1.98
55483622--55483720	39	2.5	39	83	0	117	46	20	2	31	1.62
55486137--55486174	3	12.7	3	100	0	76	68	0	0	31	0.90
55495697--55495725	11	2.6	11	100	0	58	37	0	0	62	0.96
55496005--55496033	5	5.8	5	100	0	58	41	0	0	58	0.98
55496108--55496145	4	9.5	4	83	11	51	73	0	26	0	0.83
55496112--55496145	17	2.0	17	94	0	59	73	0	26	0	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55496108--55496144	13	3.0	13	84	7	51	75	0	24	0	0.80
55509608--55509646	18	2.1	19	85	4	53	56	5	7	30	1.49
55511771--55511833	28	2.2	28	88	0	90	30	28	9	31	1.89
55516822--55517034	29	7.6	29	74	6	213	29	36	17	16	1.92
55516777--55517064	57	5.1	57	91	2	449	29	34	18	18	1.94
55516777--55517064	111	2.6	114	92	2	458	29	34	18	18	1.94
55519013--55519091	28	2.8	28	78	0	86	30	25	11	32	1.91
55520673--55520725	16	3.0	18	81	8	56	60	3	9	26	1.45
55522823--55522857	14	2.5	14	95	0	61	54	5	22	17	1.64
55522672--55522929	91	2.9	92	83	7	309	36	20	17	26	1.94
55522837--55523072	73	3.2	72	83	7	294	32	19	17	29	1.95
55535140--55535178	20	2.0	20	85	5	53	58	5	7	28	1.47
55535210--55535283	26	2.8	26	81	8	69	52	4	9	33	1.53
55535441--55535494	23	2.5	20	77	13	54	53	9	1	35	1.44
55535518--55535576	24	2.5	23	81	13	68	62	3	3	30	1.28
55535523--55535626	54	1.9	55	80	9	124	59	5	3	30	1.39
55535773--55535810	16	2.5	15	91	4	58	63	0	5	31	1.17
55535781--55535833	16	3.0	18	83	8	56	58	3	9	28	1.47
55537041--55537127	17	5.0	17	71	18	72	68	3	24	3	1.20
55537102--55537126	13	1.9	13	100	0	50	76	0	24	0	0.80
55537879--55537938	24	2.5	22	74	12	57	35	0	20	45	1.51
55541568--55541601	15	2.1	17	89	10	54	82	0	0	17	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55541568--55541601	17	2.0	17	88	0	50	82	0	0	17	0.67
55550080--55550128	20	2.5	20	89	0	80	71	2	6	20	1.18
55550141--55550174	13	2.8	12	86	8	50	44	11	0	44	1.40
55551753--55551792	20	2.0	20	100	0	80	40	15	15	30	1.87
55556420--55556468	20	2.5	20	89	0	80	71	2	6	20	1.18
55556644--55556700	19	2.9	20	82	12	73	19	24	1	54	1.54
55557770--55557864	40	2.5	36	77	15	109	40	32	9	17	1.82
55575157--55575230	30	2.5	30	86	0	103	14	33	24	27	1.94
55574601--55575909	655	2.0	655	89	1	2032	31	28	17	22	1.97
55579603--55579659	25	2.2	26	81	12	73	33	10	22	33	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352