genome.fa.s11.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  117  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37533352--37533512	43	3.7	43	77	10	141	22	17	27	32	1.96
37537531--37537743	94	2.3	93	84	7	261	24	28	16	29	1.97
37539186--37539232	24	2.0	24	83	8	60	14	17	19	48	1.81
37543189--37543268	29	2.8	29	83	11	85	45	11	18	25	1.83
37551093--37551220	6	21.3	6	100	0	256	32	0	17	50	1.46
37554308--37554360	26	2.0	26	89	7	81	13	26	7	52	1.66
37556953--37557060	38	2.8	37	76	15	89	45	14	9	30	1.77
37557400--37557429	12	2.5	12	94	0	51	33	20	40	6	1.78
37561493--37561537	21	2.1	21	91	0	72	26	4	8	60	1.46
37561501--37561541	21	2.0	21	95	4	75	24	4	7	63	1.40
37561586--37561633	16	3.0	16	79	11	62	25	0	4	70	1.04
37564596--37564767	46	3.7	46	76	13	183	22	18	26	31	1.97
37571733--37571899	43	3.9	42	77	9	160	26	14	24	33	1.95
37576377--37576449	35	2.1	35	97	0	137	28	13	8	49	1.71
37578314--37578374	27	2.3	27	77	8	70	40	1	0	57	1.08
37578362--37578485	58	2.1	58	88	2	178	45	0	3	51	1.17
37578362--37578501	58	2.4	56	83	4	172	44	0	3	51	1.24
37578666--37578720	16	3.4	16	87	5	76	29	25	7	38	1.83
37579147--37579219	24	3.0	24	81	0	74	39	24	12	23	1.89
37579181--37579227	24	2.0	24	91	8	78	44	19	10	25	1.82
37581852--37581920	36	1.9	36	84	0	93	15	17	0	66	1.25
37582201--37582234	12	2.9	12	86	4	52	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37582235--37582273	18	2.0	20	85	9	55	64	10	0	25	1.25
37582358--37582420	30	2.1	30	93	0	108	60	14	0	25	1.34
37582738--37582799	30	2.1	30	96	0	115	22	3	14	59	1.49
37589406--37589448	21	2.0	21	86	0	59	16	23	16	44	1.86
37596442--37596490	11	4.3	11	80	10	62	36	0	2	61	1.08
37596442--37596492	24	2.1	24	88	0	75	37	0	1	60	1.08
37596873--37597192	46	7.0	46	91	0	406	40	14	24	21	1.90
37606067--37606114	21	2.4	18	80	16	51	54	2	0	43	1.12
37610471--37610507	3	12.3	3	100	0	74	32	0	0	67	0.91
37613818--37613945	42	3.0	42	72	10	125	32	14	24	28	1.94
37613917--37614098	91	2.0	91	93	0	310	26	15	23	34	1.95
37615604--37615656	20	2.5	22	74	20	60	16	35	30	16	1.92
37623291--37623430	46	3.0	46	85	6	158	25	30	17	27	1.97
37630797--37630924	46	2.8	48	83	10	167	22	30	20	26	1.98
37633175--37633228	22	2.5	21	81	3	63	20	35	31	12	1.90
37635038--37635068	13	2.4	13	94	0	53	51	12	0	35	1.40
37635941--37635999	29	2.1	28	96	3	109	32	18	3	45	1.66
37636376--37636452	36	2.1	36	90	0	118	40	6	3	49	1.47
37642731--37642808	41	1.9	41	84	5	104	14	37	21	26	1.92
37644418--37645038	313	2.0	313	97	0	1161	27	20	13	38	1.90
37654625--37654792	46	3.6	46	80	7	171	28	19	27	23	1.98
37654810--37654983	49	3.6	49	79	6	176	29	18	27	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37659069--37659154	31	2.8	31	89	1	138	24	26	17	31	1.97
37659361--37659444	26	3.2	27	88	6	120	25	20	21	33	1.97
37659492--37659528	11	3.5	11	78	14	51	32	18	10	37	1.86
37659492--37659539	20	2.4	20	100	0	96	33	18	10	37	1.85
37667133--37667218	31	2.8	31	92	1	147	24	25	17	32	1.97
37667436--37667507	26	2.8	26	87	2	101	27	20	25	26	1.99
37667555--37667602	20	2.4	20	96	0	87	33	16	10	39	1.83
37678528--37678562	18	1.9	18	88	0	52	51	5	34	8	1.56
37678710--37678931	40	5.6	40	86	2	268	17	28	18	35	1.93
37678707--37678903	78	2.5	79	86	1	279	17	28	18	35	1.93
37689620--37689654	8	4.2	8	88	3	52	0	40	0	60	0.97
37689622--37689654	12	2.6	13	85	9	50	0	42	0	57	0.98
37700205--37700229	12	2.1	12	100	0	50	0	0	24	76	0.80
37704839--37704939	52	1.9	52	83	0	130	23	15	26	33	1.95
37710479--37710510	5	6.6	5	92	7	57	18	0	0	81	0.70
37710479--37710509	9	3.3	9	91	8	53	19	0	0	80	0.71
37714923--37714954	5	6.6	5	92	7	57	18	0	0	81	0.70
37714923--37714953	9	3.3	9	91	8	53	19	0	0	80	0.71
37717391--37717423	17	1.9	17	93	0	57	27	3	3	66	1.21
37717388--37717427	17	2.5	16	84	11	55	25	2	2	70	1.13
37717758--37717885	31	4.2	31	69	4	98	29	17	12	40	1.86
37718175--37718204	15	2.0	15	100	0	60	40	33	6	20	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37721037--37721093	28	2.0	28	93	0	96	43	14	10	31	1.79
37721962--37722055	24	3.8	24	84	12	111	24	23	17	35	1.95
37721962--37722089	50	2.6	48	79	7	123	28	21	17	31	1.97
37721963--37722087	24	5.0	26	78	10	84	29	21	16	32	1.96
37727803--37727987	40	4.6	39	81	6	194	25	22	26	25	2.00
37727803--37727987	79	2.3	81	81	7	209	25	22	26	25	2.00
37727856--37728020	79	2.1	79	80	6	183	26	20	26	26	1.99
37728212--37728718	49	10.6	49	92	3	806	32	7	29	29	1.86
37728212--37728718	96	5.3	96	94	2	812	32	7	29	29	1.86
37728836--37728914	37	2.1	37	85	0	104	25	17	30	26	1.97
37729805--37730069	40	6.7	40	90	2	408	23	22	28	25	1.99
37733681--37733809	39	3.3	39	86	5	172	24	20	27	26	1.99
37733627--37733809	40	4.7	40	81	8	198	25	21	26	26	2.00
37733681--37733832	78	1.9	78	83	7	193	26	20	26	26	1.99
37734033--37734538	47	10.6	49	93	3	822	32	7	30	30	1.86
37734033--37734538	96	5.3	96	93	2	828	32	7	30	30	1.86
37738443--37738702	45	5.9	45	80	6	275	31	28	16	23	1.96
37740128--37740188	30	2.0	30	87	6	88	36	8	26	29	1.85
37740604--37740739	47	2.9	45	87	8	193	24	19	26	29	1.99
37745738--37745799	24	2.6	25	84	7	92	25	22	14	37	1.92
37752700--37752766	34	2.0	34	90	0	107	29	4	22	43	1.73
37757068--37757237	46	3.7	45	79	10	200	29	29	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37759006--37759045	21	2.0	20	85	5	53	55	10	7	27	1.60
37763716--37763776	30	2.0	30	87	0	86	27	24	9	37	1.87
37774487--37774568	42	2.0	42	90	0	128	30	15	23	30	1.96
37792553--37792809	39	6.5	39	92	0	415	19	22	29	28	1.98
37800938--37801037	50	2.0	50	100	0	200	44	10	14	32	1.78
37800949--37801029	26	3.2	26	60	19	62	44	8	16	30	1.77
37803078--37803218	23	6.0	22	75	13	88	25	22	17	34	1.95
37803113--37803214	23	4.4	23	80	8	109	24	22	17	35	1.95
37803129--37803214	45	1.9	45	83	4	111	25	24	17	32	1.97
37803293--37803319	12	2.2	12	100	0	54	25	29	14	29	1.95
37805587--37805862	48	5.8	48	77	9	287	28	25	19	26	1.99
37809075--37809128	26	2.2	25	77	9	58	29	16	3	50	1.63
37815512--37815551	21	1.9	21	85	10	55	27	25	7	40	1.82
37817274--37817489	34	6.4	34	70	10	99	38	8	20	32	1.82
37820343--37820387	22	2.0	22	91	0	72	33	2	15	48	1.57
37824075--37824119	22	2.0	22	91	0	72	33	2	15	48	1.57
37830994--37831039	21	2.2	21	88	3	67	47	10	4	36	1.58
37835053--37835232	41	4.4	41	85	1	245	22	28	15	33	1.95
37835051--37835232	81	2.2	82	91	0	285	22	28	15	33	1.95
37839653--37839802	27	5.6	27	80	6	169	40	20	8	31	1.82
37839653--37839806	81	1.9	82	82	4	195	38	20	8	31	1.83
37839653--37839821	54	3.1	53	73	9	137	39	19	9	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37839814--37840050	27	8.7	27	91	0	366	27	24	8	38	1.85
37839827--37840092	81	3.3	81	86	0	253	29	23	9	37	1.86
37840068--37840186	27	4.4	27	78	0	112	41	21	7	29	1.81
37840044--37840156	54	2.1	54	81	0	127	43	20	7	28	1.80
37840168--37840525	27	13.3	27	90	0	527	34	19	21	24	1.96
37840114--37840525	81	5.1	80	86	2	326	35	19	19	25	1.96
37840930--37841025	25	3.6	25	80	14	93	18	19	15	45	1.85
37840927--37840997	31	2.3	31	97	0	133	19	16	15	47	1.82
37840927--37841039	6	18.3	6	69	18	72	19	18	15	46	1.83
37843015--37843168	81	1.9	82	80	1	184	40	21	7	30	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352