Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  331  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106658924--106659021
24
4.0
24
70
7
70
40
6
2
51
1.38
106658918--106659014
51
1.9
51
97
0
185
39
6
4
50
1.47
106659541--106659592
24
2.2
24
89
6
79
25
26
1
46
1.63
106661621--106661663
21
2.2
20
91
8
70
37
0
2
60
1.10
106670951--106671012
27
2.3
27
80
2
70
67
1
14
16
1.31
106672660--106672907
83
3.0
83
99
0
489
32
25
20
21
1.97
106689495--106689528
14
2.4
14
90
0
50
35
26
8
29
1.87
106695757--106696018
131
2.0
132
90
1
418
28
6
27
37
1.82
106698636--106698687
27
1.9
27
84
7
70
28
9
0
61
1.27
106709925--106709952
12
2.3
12
100
0
56
7
14
32
46
1.71
106710071--106710222
40
3.8
39
77
15
152
30
21
21
26
1.99
106710069--106710218
80
1.9
80
86
6
216
28
22
21
27
1.99
106710264--106710371
40
2.7
40
85
7
130
24
23
21
31
1.98
106710585--106710653
28
2.5
28
82
0
84
20
0
31
47
1.50
106710600--106710718
36
3.4
36
76
12
104
19
0
34
46
1.50
106710599--106710720
7
17.3
7
70
8
59
18
0
36
45
1.50
106711360--106711411
14
3.8
13
80
7
59
59
1
1
36
1.19
106716594--106716708
43
2.7
43
81
6
108
24
13
26
34
1.93
106718239--106718331
36
2.6
36
85
0
123
35
15
21
27
1.93
106718240--106718331
18
5.1
18
82
5
105
35
15
20
28
1.93
106720545--106720601
22
2.6
22
80
5
71
14
8
1
75
1.11
106722112--106722195
39
2.2
39
85
12
111
60
3
0
35
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106722982--106723026
23
2.0
23
86
0
63
33
2
0
64
1.06
106723008--106723038
6
5.0
6
96
4
53
32
0
0
67
0.91
106723047--106723133
40
2.1
41
85
2
113
22
2
9
65
1.33
106730232--106730280
16
3.1
15
91
5
71
65
6
0
28
1.16
106730228--106730279
24
2.2
25
80
16
65
67
5
0
26
1.13
106730239--106730280
8
5.5
8
97
2
70
64
7
0
28
1.20
106730228--106730287
16
3.8
16
84
6
68
65
5
1
28
1.23
106730438--106730502
25
2.8
24
83
6
80
52
6
7
33
1.55
106730491--106730571
31
2.6
31
84
5
94
56
3
4
34
1.38
106730432--106730651
23
9.0
25
71
16
115
55
4
5
34
1.42
106730463--106730620
79
2.0
78
80
8
178
55
5
5
34
1.44
106731141--106731226
30
2.9
30
87
3
120
20
3
51
24
1.63
106737216--106737262
19
2.5
19
79
3
60
6
14
2
76
1.08
106737904--106737962
26
2.3
25
80
13
66
32
10
3
54
1.51
106738135--106738256
37
3.2
37
83
5
147
30
2
6
60
1.35
106738181--106738241
25
2.5
24
84
12
79
31
1
3
63
1.20
106738175--106738244
13
5.5
12
70
18
52
31
1
2
64
1.17
106738175--106738244
26
2.7
26
82
10
90
31
1
2
64
1.17
106738202--106738274
37
2.0
37
86
0
101
35
4
4
56
1.38
106738299--106738349
23
2.1
25
85
7
70
35
5
1
56
1.35
106738468--106738519
21
2.4
21
81
12
61
30
11
1
55
1.46
106738924--106738972
13
3.1
16
75
22
50
22
0
4
73
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106738924--106738982
29
2.0
29
83
6
75
18
0
5
76
0.97
106738924--106738984
30
2.1
29
82
8
72
19
0
4
75
0.98
106741011--106741055
17
2.7
16
86
13
56
66
4
6
22
1.33
106743759--106743842
26
3.2
26
96
0
150
36
25
4
33
1.77
106744230--106744287
20
2.9
19
75
17
55
65
1
12
20
1.34
106744385--106744546
35
4.7
33
68
13
103
61
3
6
28
1.39
106744380--106744546
3
56.7
3
71
10
112
61
3
6
28
1.38
106746404--106746445
3
14.0
3
80
9
50
69
4
0
26
1.08
106746403--106746444
13
3.1
14
82
6
59
71
4
0
23
1.05
106754207--106754271
32
2.0
32
100
0
130
35
15
18
30
1.92
106756759--106756963
102
2.0
102
99
0
401
22
16
20
40
1.92
106757333--106757405
24
3.0
24
89
0
119
12
46
4
36
1.61
106758206--106758230
8
3.1
8
100
0
50
0
16
24
60
1.36
106762514--106762580
34
1.9
35
87
3
100
43
11
10
34
1.76
106766158--106766199
17
2.5
18
81
11
54
33
0
2
64
1.07
106771363--106771406
13
3.4
13
74
0
52
40
27
6
25
1.80
106779862--106779904
19
2.2
20
84
12
54
67
0
2
30
1.03
106781752--106781814
31
2.0
31
90
0
99
44
9
11
34
1.73
106782197--106782289
9
9.6
9
69
17
53
58
1
1
39
1.13
106782192--106782289
40
2.5
39
80
11
110
57
1
1
40
1.12
106783047--106783103
28
2.0
28
100
0
114
14
19
21
45
1.85
106786897--106786935
13
2.7
15
84
11
55
69
0
10
20
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106787217--106787241
7
3.6
7
100
0
50
64
12
0
24
1.27
106788604--106788643
21
1.9
21
90
10
64
42
0
10
47
1.37
106789719--106789743
5
5.0
5
100
0
50
0
20
0
80
0.72
106793622--106793655
18
1.9
18
88
5
52
32
14
5
47
1.69
106798202--106798241
21
2.0
21
85
5
55
60
5
12
22
1.52
106800257--106800365
37
2.9
37
94
0
191
26
30
19
23
1.98
106800568--106800740
47
3.7
47
89
0
274
26
28
11
33
1.91
106800661--106800732
22
3.1
22
64
24
58
23
29
13
33
1.93
106807211--106807260
26
2.0
24
88
7
73
64
6
0
30
1.18
106807231--106807289
21
2.8
21
78
12
59
69
8
0
22
1.15
106807336--106807368
15
2.1
16
88
11
50
69
0
0
30
0.88
106813471--106813500
3
10.0
3
100
0
60
0
33
0
66
0.92
106816399--106816508
55
2.0
55
98
0
211
23
15
9
51
1.71
106817256--106817351
10
10.4
9
74
14
54
60
1
3
35
1.19
106817288--106817326
20
2.0
20
89
0
60
53
0
2
43
1.14
106817278--106817352
29
2.6
29
87
8
100
56
0
4
40
1.18
106817300--106817361
29
2.1
30
82
8
74
56
3
3
37
1.32
106819196--106819225
15
1.9
16
93
6
53
46
0
6
46
1.29
106819389--106819435
16
2.8
16
81
18
60
21
6
0
72
1.07
106819672--106819706
16
2.1
17
89
5
54
28
0
0
71
0.86
106819734--106819814
40
2.0
40
85
0
108
24
2
9
62
1.38
106825950--106826017
29
2.3
30
78
17
79
58
8
4
27
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106831044--106831083
20
2.0
20
85
9
55
70
5
7
17
1.30
106831811--106831841
16
1.9
16
93
0
53
64
3
0
32
1.09
106836032--106836057
5
5.2
5
100
0
52
19
0
0
80
0.71
106840278--106840376
49
2.0
49
98
0
189
41
10
25
23
1.85
106846830--106846869
11
3.6
11
79
0
53
22
10
7
60
1.54
106847688--106847804
61
1.9
61
87
6
175
36
15
4
43
1.66
106848203--106848273
31
2.3
31
97
0
133
53
5
12
28
1.61
106857623--106857656
17
2.0
17
100
0
68
47
0
0
52
1.00
106870576--106870630
24
2.3
25
81
12
71
14
5
0
80
0.89
106870585--106870628
16
2.6
17
78
3
54
11
6
0
81
0.86
106872076--106872132
29
2.0
29
86
6
80
14
8
0
77
0.99
106872084--106872125
21
2.0
22
85
4
59
11
11
0
76
1.03
106872074--106872133
8
7.9
8
78
15
56
15
8
0
76
1.00
106872909--106873024
31
3.9
31
77
8
114
54
6
24
15
1.63
106894009--106894168
52
3.1
52
79
4
178
29
25
18
26
1.98
106900771--106900849
27
2.8
27
77
17
81
43
2
24
30
1.67
106901666--106902061
197
2.0
197
93
0
684
39
6
18
36
1.75
106904513--106904556
21
2.1
21
95
0
79
38
4
34
22
1.75
106906374--106906512
39
3.6
39
92
0
215
38
23
25
12
1.90
106906376--106906479
21
5.2
21
69
17
87
38
23
26
11
1.89
106908724--106909369
262
2.5
264
85
1
884
27
18
17
36
1.93
106918607--106918631
11
2.3
11
100
0
50
92
0
0
8
0.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106919270--106919309
20
2.0
20
85
9
55
32
7
5
55
1.50
106919395--106919451
22
2.6
22
83
5
62
42
15
1
40
1.58
106919494--106919547
23
2.5
20
80
13
63
35
1
7
55
1.39
106919662--106919696
9
4.0
9
92
3
54
34
5
0
60
1.21
106919963--106920007
22
2.0
23
91
4
74
24
6
4
64
1.37
106920081--106920209
3
43.3
3
74
10
104
33
5
2
58
1.33
106922475--106922541
27
2.5
27
97
0
125
31
7
20
40
1.80
106922985--106923209
112
2.0
112
97
0
423
17
19
22
40
1.91
106925052--106925095
23
1.9
23
85
0
61
52
6
2
38
1.41
106925210--106925268
26
2.3
26
83
13
70
55
1
5
37
1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352