genome.fa.s11.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  151  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49534866--49535012	54	2.7	56	84	3	183	36	17	24	21	1.94
49534874--49535062	55	3.5	55	81	7	208	36	19	24	20	1.95
49537704--49537760	26	2.2	26	96	0	105	33	24	19	22	1.97
49537797--49537891	26	3.9	25	70	14	81	36	16	21	25	1.94
49540247--49540367	42	2.9	42	73	9	111	32	27	14	25	1.95
49541674--49541779	53	2.0	54	90	1	169	38	11	25	24	1.89
49542467--49542630	42	3.9	41	80	9	170	30	22	15	31	1.95
49543544--49543699	24	6.2	24	77	11	161	51	13	16	19	1.76
49543544--49543718	30	6.2	29	77	17	172	50	13	16	19	1.78
49543544--49543693	79	1.9	79	95	0	273	51	13	16	19	1.76
49543544--49543699	6	25.8	6	75	15	144	51	13	16	19	1.76
49543836--49543901	27	2.5	26	85	7	87	37	24	22	15	1.92
49543854--49543909	27	2.1	27	83	6	69	37	23	23	16	1.93
49543860--49543917	27	2.1	27	81	6	64	37	29	18	13	1.90
49544220--49544302	27	3.1	26	87	5	112	37	21	21	19	1.94
49544501--49544696	27	7.3	27	84	0	239	26	18	18	36	1.94
49544717--49545192	27	17.6	27	81	8	454	40	9	21	27	1.84
49544701--49545192	54	9.1	54	84	5	554	41	9	22	27	1.84
49544701--49545221	81	6.4	81	82	4	568	40	9	22	27	1.84
49547653--49547713	13	4.6	13	75	15	54	44	3	13	39	1.60
49548745--49548785	21	1.9	22	85	5	57	39	0	21	39	1.54
49554090--49554127	19	2.0	19	100	0	76	36	10	15	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49554341--49554905	48	11.8	48	92	0	923	35	6	27	30	1.81
49554953--49555052	37	2.7	37	98	0	191	23	19	33	25	1.97
49564505--49564565	30	2.0	30	90	0	95	37	8	24	29	1.84
49567286--49567384	29	3.7	26	70	19	62	64	1	11	23	1.32
49583659--49583934	48	5.8	48	76	4	218	23	30	19	27	1.98
49592649--49592739	46	2.0	45	89	4	139	30	27	19	21	1.98
49593155--49593214	30	2.0	30	90	0	93	30	25	8	36	1.85
49594800--49594886	39	2.2	39	95	0	156	21	22	27	27	1.99
49595959--49596084	48	2.6	48	83	2	155	25	30	18	26	1.98
49595959--49596132	96	1.8	96	84	0	240	24	29	18	26	1.98
49602692--49602744	26	2.0	26	85	7	72	20	15	22	41	1.89
49603989--49604120	24	5.5	24	89	2	194	21	37	5	35	1.77
49607880--49608111	49	4.7	49	81	3	275	31	26	17	25	1.97
49615046--49615103	25	2.3	25	100	0	116	58	5	3	32	1.37
49620841--49620948	40	2.7	40	80	8	121	25	15	25	32	1.96
49624964--49625054	28	3.3	28	84	6	114	23	23	19	34	1.97
49624976--49625078	27	3.8	27	79	13	104	23	22	18	35	1.95
49636735--49636809	27	2.8	27	80	6	80	34	21	22	21	1.97
49636950--49637223	27	10.1	27	84	3	354	24	21	20	34	1.97
49650119--49650178	27	2.2	26	80	8	66	33	20	25	21	1.97
49650335--49650610	27	10.1	27	81	4	331	23	21	20	34	1.97
49650335--49650610	110	2.5	108	86	2	383	23	21	20	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49659129--49659190	31	2.0	31	90	0	97	45	25	8	20	1.79
49660168--49660278	37	3.0	37	91	0	168	27	30	18	23	1.97
49660427--49660611	48	3.8	48	91	4	300	30	25	7	36	1.83
49660427--49660610	98	1.9	97	92	4	309	30	26	7	36	1.83
49660581--49660774	47	4.1	47	89	0	280	26	28	10	33	1.90
49660674--49660745	22	3.1	22	64	24	58	23	29	13	33	1.93
49660533--49660774	94	2.6	94	80	3	290	27	28	9	33	1.89
49664802--49665238	40	10.8	40	89	8	661	25	29	21	23	1.99
49664905--49665005	50	2.0	51	98	1	195	27	30	19	21	1.98
49666504--49666609	37	2.9	37	92	1	169	26	31	17	24	1.97
49666756--49666988	48	4.8	48	89	3	333	30	25	5	38	1.78
49666967--49667151	47	3.9	47	91	0	280	26	29	10	32	1.90
49667051--49667122	22	3.1	22	64	24	58	23	29	13	33	1.93
49686680--49686833	42	3.6	42	79	5	168	29	24	16	29	1.96
49687886--49687910	13	1.9	13	100	0	50	44	16	0	40	1.47
49688901--49688976	37	2.1	37	94	0	134	26	15	38	19	1.92
49689485--49689540	28	2.0	29	96	3	105	33	10	12	42	1.77
49691923--49691948	10	2.6	10	100	0	52	65	0	19	15	1.27
49696307--49696376	27	2.6	27	95	2	113	31	28	12	27	1.93
49696307--49696404	28	3.5	28	90	2	135	31	28	13	26	1.94
49699995--49700170	46	3.8	46	77	12	198	21	19	29	28	1.98
49701478--49701597	39	3.0	39	90	4	170	30	10	12	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49703965--49704054	36	2.5	36	77	1	90	25	25	18	30	1.98
49710787--49710850	33	1.9	33	96	0	119	53	7	3	35	1.46
49710792--49710846	18	3.2	17	70	14	51	54	7	1	36	1.39
49712685--49712948	61	4.3	61	82	2	316	34	15	23	25	1.94
49712839--49713041	93	2.2	93	86	0	271	33	14	25	26	1.94
49712907--49712982	32	2.4	32	79	0	80	30	17	25	27	1.97
49721662--49721707	23	2.0	23	95	0	83	39	0	15	45	1.46
49721665--49721743	13	6.5	13	73	16	80	37	1	15	45	1.54
49721668--49721743	36	2.1	36	97	0	143	38	1	15	44	1.55
49721873--49722034	79	2.1	79	96	0	297	16	20	6	56	1.63
49726961--49727122	43	3.8	42	82	6	184	23	15	27	33	1.95
49733536--49733576	10	3.5	12	77	16	50	58	4	2	34	1.32
49733528--49733577	22	2.3	23	93	6	86	56	4	2	38	1.30
49737906--49738130	40	5.6	40	84	4	283	25	24	27	23	2.00
49737906--49738130	120	1.9	121	85	4	312	25	24	27	23	2.00
49740857--49740890	17	2.0	17	88	0	50	20	14	8	55	1.65
49743388--49743563	46	3.8	45	79	10	203	21	20	29	28	1.98
49743384--49743555	93	1.8	93	93	0	299	20	20	30	27	1.98
49745802--49746168	48	7.6	48	79	4	371	28	16	27	27	1.97
49745802--49746182	96	3.9	96	87	0	537	28	16	28	26	1.97
49745802--49746184	144	2.6	144	80	5	425	28	16	27	26	1.97
49750988--49751020	15	2.2	16	89	10	52	12	6	0	81	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49755553--49755625	25	3.0	25	87	2	103	27	17	8	46	1.76
49756444--49756619	45	4.0	45	89	3	243	24	22	28	24	2.00
49761588--49761648	30	2.0	30	90	0	95	31	24	8	36	1.85
49766005--49766220	24	9.0	24	89	0	333	29	21	20	28	1.98
49766271--49766336	20	3.3	20	89	0	105	30	21	13	34	1.92
49766381--49766428	25	1.9	25	86	0	69	27	14	22	35	1.93
49774177--49774320	24	6.0	24	88	2	209	29	23	19	27	1.98
49774371--49774436	20	3.3	20	89	0	105	30	21	12	36	1.90
49774473--49774520	25	1.9	25	91	0	78	27	12	25	35	1.92
49776422--49776646	40	5.7	39	88	3	290	24	28	23	23	2.00
49779540--49779657	49	2.4	47	84	6	139	27	22	25	25	2.00
49781632--49781657	13	2.0	13	100	0	52	61	30	0	7	1.24
49789913--49789959	20	2.3	20	85	0	67	17	38	34	10	1.84
49802624--49802839	47	4.6	47	89	0	333	32	11	29	26	1.91
49802745--49802820	23	3.2	25	62	24	63	28	13	34	23	1.92
49803019--49803127	37	2.9	37	88	0	164	23	18	31	26	1.97
49813463--49813687	40	5.7	40	86	6	289	24	22	28	25	2.00
49813463--49813720	119	2.2	119	82	6	301	25	21	27	25	1.99
49816807--49817029	40	5.6	39	85	3	250	26	27	20	25	1.99
49816807--49817029	120	1.9	119	82	6	281	26	27	20	25	1.99
49823061--49823361	40	7.6	40	87	4	378	26	27	20	24	1.99
49830923--49831106	40	4.6	39	83	6	210	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49830923--49831106	79	2.3	80	85	6	232	24	22	27	25	2.00
49830976--49831139	79	2.1	78	85	5	215	26	21	27	25	1.99
49835262--49835481	49	4.6	49	74	7	184	25	27	19	27	1.98
49835410--49835576	46	3.6	46	77	3	138	21	28	20	28	1.98
49838375--49838409	18	1.9	18	88	0	52	25	17	14	42	1.86
49843101--49843227	49	2.6	49	79	2	139	25	22	20	32	1.98
49843248--49843414	46	3.6	47	76	8	162	23	28	17	29	1.97
49848241--49848729	3	163.3	3	66	15	158	29	7	3	59	1.41
49848453--49848610	73	2.2	71	83	2	190	29	5	3	60	1.37
49849007--49849067	3	20.0	3	76	3	59	29	6	1	62	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352