genome.fa.s11.2.7.7.80.10.50.1000.344.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  344  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110152117--110152185	32	2.2	31	82	10	86	28	5	5	59	1.44
110155176--110155213	20	1.9	20	84	10	51	60	0	7	31	1.25
110155653--110155734	38	2.2	36	81	14	96	48	13	12	25	1.77
110155681--110155737	18	3.1	18	85	10	80	49	10	12	28	1.73
110155749--110155814	18	3.8	18	76	6	64	37	12	13	36	1.82
110155750--110155814	17	3.8	17	75	4	67	38	12	13	35	1.83
110155877--110155924	17	2.7	18	76	23	57	41	10	16	31	1.82
110156505--110156568	14	4.5	14	74	20	53	1	26	0	71	0.94
110156505--110156570	28	2.3	29	76	21	68	1	27	0	71	0.95
110157092--110157193	30	3.4	30	82	5	118	46	3	20	29	1.69
110157451--110158361	54	17.0	54	92	3	1506	37	17	15	29	1.91
110157451--110158361	214	4.3	215	92	4	1495	37	17	15	29	1.91
110158309--110158917	72	8.5	72	92	2	1010	33	18	16	31	1.93
110158309--110158917	143	4.2	145	95	1	1032	33	18	16	31	1.93
110163759--110163804	24	1.9	24	82	8	58	6	30	4	58	1.43
110170678--110170731	28	2.0	28	88	3	83	48	14	9	27	1.75
110170718--110170783	18	3.8	18	76	6	64	37	12	13	36	1.82
110170652--110170707	18	3.1	18	87	7	87	48	10	12	28	1.74
110170719--110170783	17	3.8	17	75	4	67	38	12	13	35	1.83
110170846--110170893	17	2.7	18	76	23	57	41	10	16	31	1.82
110171011--110171048	20	1.9	20	88	0	58	42	7	13	36	1.73
110171476--110171530	29	1.9	29	88	3	85	0	29	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110171478--110171543	29	2.3	29	78	17	75	0	28	0	71	0.87
110172065--110172166	30	3.4	29	81	5	123	47	3	19	29	1.68
110172458--110172506	25	2.0	25	83	0	62	38	0	16	44	1.48
110176908--110176975	34	2.0	34	100	0	136	29	14	5	50	1.67
110179873--110180157	127	2.2	127	97	0	534	33	10	17	37	1.85
110182309--110182416	15	7.2	15	67	12	78	44	7	22	25	1.79
110182303--110182426	30	4.1	30	93	1	203	43	6	24	25	1.78
110186992--110187066	30	2.5	30	95	0	132	45	6	22	25	1.77
110186992--110187066	15	5.0	15	65	12	55	45	6	22	25	1.77
110189162--110189195	17	2.0	17	94	0	59	50	0	0	50	1.00
110189212--110189249	18	2.0	20	90	10	62	34	10	18	36	1.85
110189494--110189536	17	2.5	18	77	7	54	30	2	2	65	1.18
110191897--110191922	11	2.4	11	100	0	52	80	7	11	0	0.89
110193717--110193768	26	2.0	26	100	0	104	23	19	30	26	1.98
110195256--110195280	2	12.5	2	100	0	50	48	0	0	52	1.00
110195281--110195339	28	2.1	29	96	3	111	54	8	15	22	1.68
110195344--110195447	49	2.1	50	96	0	176	52	6	18	22	1.68
110197814--110197839	13	2.0	13	100	0	52	84	0	15	0	0.62
110199545--110199598	17	3.2	17	78	14	51	55	20	3	20	1.58
110204728--110205170	224	2.0	218	88	4	647	32	17	14	35	1.90
110210393--110210443	20	2.5	20	93	0	84	50	15	19	13	1.77
110218637--110218668	10	2.8	12	86	13	50	0	15	3	81	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110241707--110241884	40	4.4	40	85	5	250	30	27	19	21	1.98
110241707--110241884	82	2.2	80	86	4	250	30	27	19	21	1.98
110248038--110248113	37	2.1	37	100	0	152	36	28	10	23	1.88
110264976--110265009	11	3.2	11	87	4	52	5	11	0	82	0.83
110265393--110265902	234	2.2	229	89	2	779	30	10	16	41	1.83
110265927--110266439	229	2.2	234	82	6	625	29	8	16	45	1.76
110266436--110266608	85	2.0	86	98	1	339	28	5	18	46	1.72
110271337--110271379	21	2.0	21	100	0	86	13	4	18	62	1.48
110271408--110271441	17	2.0	17	94	0	59	32	5	20	41	1.76
110280309--110280372	32	2.0	32	100	0	128	37	9	9	43	1.69
110286196--110286235	21	1.9	21	94	0	71	72	5	0	22	1.04
110286196--110286242	11	4.4	11	83	5	60	72	4	2	21	1.12
110305842--110305972	58	2.3	58	78	5	140	39	18	19	22	1.92
110306883--110306926	22	2.0	22	95	0	79	61	9	11	18	1.55
110315362--110315407	24	1.9	24	82	8	58	23	13	4	58	1.52
110321117--110321141	3	8.3	3	100	0	50	68	0	0	32	0.90
110321844--110321873	3	10.0	3	100	0	60	33	0	0	66	0.92
110322019--110322085	14	4.7	14	85	3	71	41	7	13	37	1.73
110322033--110322073	15	2.8	15	92	3	66	41	7	12	39	1.70
110323166--110323404	129	1.9	129	96	0	442	35	18	17	28	1.94
110323343--110323455	51	2.2	51	90	0	172	38	16	14	30	1.88
110324237--110324274	19	2.0	19	94	0	67	39	0	10	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110329874--110329908	18	1.9	18	94	0	61	42	0	2	54	1.15
110331640--110332204	3	187.0	3	65	16	143	59	3	7	29	1.43
110331912--110332077	28	5.6	28	72	17	104	59	1	8	30	1.38
110333923--110333947	10	2.5	10	100	0	50	92	0	0	8	0.40
110334091--110334125	18	1.9	18	94	0	61	17	5	8	68	1.35
110334577--110334646	23	3.0	22	77	10	68	31	11	15	41	1.83
110335684--110335715	16	2.0	16	100	0	64	43	18	6	31	1.75
110335785--110335824	20	2.0	21	95	5	73	72	10	7	10	1.28
110343554--110343676	62	2.0	62	88	0	183	21	24	24	30	1.99
110351852--110351950	30	3.3	30	94	0	180	26	50	6	17	1.69
110352429--110352635	23	8.6	24	72	14	90	34	5	4	55	1.44
110352571--110352678	22	4.9	22	70	15	71	30	6	5	57	1.47
110352495--110352638	25	5.8	25	74	11	109	32	6	4	56	1.46
110352620--110352678	23	2.8	20	72	16	57	32	6	5	55	1.48
110360963--110360987	4	6.2	4	100	0	50	76	0	0	24	0.80
110361060--110361105	15	2.9	15	90	6	65	67	0	6	26	1.15
110361035--110361096	21	2.7	25	78	19	80	62	0	8	29	1.23
110361052--110361138	15	6.0	14	73	13	52	64	0	9	26	1.23
110361693--110361720	5	5.6	5	100	0	56	78	0	0	21	0.75
110362074--110362157	26	3.2	26	94	0	141	35	5	22	35	1.79
110363600--110363674	26	2.8	26	85	4	87	34	21	12	32	1.90
110363778--110363890	27	4.2	27	82	3	120	17	23	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110363776--110363890	54	2.1	54	87	6	162	17	23	23	35	1.95
110368777--110368809	2	16.5	2	100	0	66	51	0	0	48	1.00
110369090--110369174	43	2.0	43	95	0	152	31	16	8	43	1.77
110369147--110369218	35	2.1	35	94	0	126	25	22	12	40	1.89
110370636--110370748	30	3.9	30	79	9	117	32	16	14	36	1.89
110370693--110370744	26	2.0	26	92	0	86	28	17	17	36	1.92
110373224--110373278	28	2.0	28	92	0	92	50	18	7	23	1.71
110379492--110379532	21	2.0	21	90	0	64	29	21	29	19	1.98
110384151--110384200	23	2.2	23	100	0	100	64	4	4	28	1.30
110385465--110385489	11	2.3	11	100	0	50	36	8	0	56	1.29
110386884--110386921	3	12.7	3	100	0	76	68	0	0	31	0.90
110388040--110388081	13	2.9	14	80	13	50	54	0	0	45	0.99
110388044--110388080	16	2.3	16	86	13	58	59	0	0	40	0.97
110391531--110391655	19	6.9	18	78	17	100	36	11	15	36	1.83
110391538--110391655	35	3.3	35	95	3	200	37	11	14	36	1.83
110392137--110392195	17	3.5	16	73	21	50	32	1	0	66	1.02
110392131--110392196	15	3.9	17	71	23	59	33	1	0	65	1.02
110398123--110398169	7	6.7	7	83	13	62	85	0	12	2	0.70
110398124--110398169	13	3.4	13	82	11	65	84	0	13	2	0.71
110399114--110399865	205	3.7	205	91	0	1173	30	18	21	29	1.97
110400238--110400355	17	6.6	17	87	7	155	38	11	13	36	1.82
110400238--110400355	35	3.3	35	93	3	191	38	11	13	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110400830--110400895	17	3.9	17	73	16	66	34	1	0	63	1.04
110400795--110400881	38	2.3	37	82	9	97	34	4	1	59	1.25
110400872--110400921	26	1.9	26	83	0	64	36	4	0	60	1.16
110405944--110405995	23	2.3	23	93	0	86	48	13	1	36	1.54
110409166--110409201	15	2.4	15	100	0	72	77	0	0	22	0.76
110409181--110409231	22	2.3	22	86	6	77	70	0	0	29	0.87
110413449--110413513	26	2.5	26	82	0	85	38	23	24	13	1.91
110413579--110413640	25	2.5	24	86	2	79	37	24	25	12	1.91
110413571--110413640	24	2.9	23	79	10	77	38	22	25	12	1.90
110418130--110418191	31	2.0	31	96	0	115	41	11	11	35	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352