genome.fa.s11.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  137  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44379830--44379871	20	2.1	20	95	0	75	30	14	19	35	1.91
44381522--44381699	57	3.1	57	79	6	191	28	15	8	46	1.76
44392127--44392186	30	2.0	30	87	6	86	28	25	6	40	1.80
44395742--44395897	39	4.0	39	80	5	156	19	22	27	30	1.98
44404562--44404588	13	2.1	13	100	0	54	59	18	14	7	1.58
44407853--44407888	18	2.0	18	100	0	72	16	33	16	33	1.92
44416489--44416591	21	4.8	21	77	14	111	58	0	4	35	1.26
44416489--44416603	23	5.2	23	73	21	88	57	0	6	35	1.30
44419018--44419067	16	3.0	16	82	5	55	34	0	2	64	1.05
44425346--44425429	26	3.2	26	93	0	141	38	25	4	32	1.77
44426351--44426414	30	2.2	30	91	2	103	28	23	14	34	1.93
44439409--44439439	15	2.1	15	100	0	62	32	29	25	12	1.93
44439841--44439904	31	2.1	31	93	0	110	32	20	7	39	1.81
44441488--44441597	31	3.4	31	67	14	85	14	30	5	49	1.66
44441477--44441635	68	2.3	70	90	5	250	13	35	3	47	1.60
44446907--44446993	44	2.0	44	82	6	106	33	12	24	29	1.92
44447378--44447511	57	2.4	55	83	8	164	43	1	3	51	1.28
44464007--44464078	20	3.6	20	83	10	76	12	23	20	43	1.86
44473879--44473963	42	2.0	42	88	4	127	15	24	35	24	1.94
44476632--44476731	30	3.3	30	87	0	137	27	20	27	26	1.99
44479266--44479290	13	1.9	13	100	0	50	36	0	0	64	0.94
44479299--44479369	20	3.7	18	77	14	70	43	4	2	49	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44479345--44479417	25	3.0	24	67	11	58	36	4	1	57	1.26
44479485--44479531	25	1.9	25	86	4	69	65	0	2	31	1.04
44479614--44479665	21	2.5	22	90	9	90	61	0	0	38	0.96
44479614--44479672	21	2.8	21	85	14	86	61	1	0	37	1.07
44479648--44479741	47	2.0	47	82	8	113	52	5	1	41	1.31
44483054--44483116	18	3.4	18	77	14	65	39	3	12	44	1.59
44484278--44484321	12	3.7	12	79	11	54	36	0	0	63	0.95
44491770--44491817	24	2.0	24	87	4	69	56	4	4	35	1.38
44492932--44492956	11	2.3	11	100	0	50	44	0	16	40	1.47
44492991--44493050	17	3.5	17	74	0	66	30	8	13	48	1.71
44492983--44493050	34	2.0	34	97	0	127	29	7	14	48	1.71
44497635--44497923	50	5.9	50	81	5	250	27	19	29	23	1.98
44497640--44497917	100	2.8	98	84	5	305	28	19	28	23	1.98
44500028--44500192	42	3.9	42	73	7	138	29	15	24	30	1.96
44500456--44500506	25	2.0	25	100	0	102	37	7	11	43	1.71
44507212--44507331	46	2.6	46	85	2	152	28	18	29	24	1.98
44509460--44509517	4	13.5	4	85	10	71	75	0	22	1	0.89
44509467--44509519	18	3.0	18	86	2	81	75	0	20	3	0.96
44509457--44509518	22	3.0	22	79	15	87	74	0	24	1	0.91
44513157--44513281	62	2.0	62	95	0	223	36	5	8	49	1.57
44513219--44513310	48	1.9	48	95	0	166	32	5	11	50	1.62
44514492--44514526	14	2.5	14	90	0	52	42	5	17	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44533566--44533723	40	4.0	40	97	0	289	22	20	29	27	1.98
44533581--44533749	80	2.1	80	87	0	239	22	21	28	26	1.99
44535574--44535611	20	2.0	20	89	5	60	31	18	23	26	1.97
44541262--44541347	39	2.2	39	85	4	111	22	20	26	30	1.98
44551551--44551590	3	13.3	3	100	0	80	67	0	0	32	0.91
44552470--44552532	21	3.0	22	81	6	76	19	7	11	61	1.53
44553143--44553319	97	1.8	96	80	3	212	27	21	16	35	1.94
44553199--44553946	143	5.3	142	80	4	726	28	21	19	31	1.97
44579910--44579939	14	2.1	15	93	6	53	63	13	10	13	1.52
44598450--44598572	46	2.6	46	85	10	144	29	19	27	23	1.98
44604731--44604940	103	2.0	103	95	0	375	22	9	28	39	1.85
44606655--44606688	3	11.3	3	87	0	50	38	2	0	58	1.13
44608733--44608822	28	3.3	28	84	4	121	17	21	23	37	1.94
44608731--44608846	27	4.3	26	84	7	133	18	20	22	38	1.93
44608731--44608846	54	2.1	54	87	3	162	18	20	22	38	1.93
44612356--44612507	76	2.0	76	100	0	304	25	25	19	30	1.98
44617837--44617951	27	4.2	28	82	4	121	20	22	19	37	1.94
44617835--44617959	53	2.3	55	83	5	148	20	24	20	36	1.95
44634149--44634268	48	2.5	48	85	2	154	27	22	15	35	1.94
44645107--44645185	31	2.5	31	85	0	122	25	22	18	32	1.97
44645207--44645300	42	2.2	42	86	0	134	35	20	13	30	1.91
44645433--44645568	26	5.3	26	89	3	199	26	23	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44645433--44645568	52	2.7	51	94	5	233	26	23	22	27	1.99
44646017--44646056	21	2.0	21	95	5	73	22	30	20	27	1.98
44646374--44646435	27	2.3	27	80	5	72	20	22	19	37	1.95
44646374--44646448	27	2.8	27	69	18	66	24	18	20	37	1.94
44646468--44646768	27	11.0	27	75	8	216	31	8	19	39	1.83
44646577--44646759	81	2.3	81	87	1	251	30	9	20	39	1.84
44650069--44650180	32	3.5	31	81	6	125	25	25	33	14	1.94
44650918--44650969	20	2.7	20	82	14	56	38	0	23	38	1.55
44651650--44651882	49	4.8	49	77	5	197	29	18	27	24	1.98
44651650--44651833	98	1.9	98	87	1	271	29	19	27	23	1.98
44654144--44654193	26	1.9	26	84	8	66	18	8	16	58	1.62
44655462--44655516	29	1.9	28	88	3	83	18	23	23	34	1.96
44658835--44658909	39	1.9	38	81	2	87	22	21	28	28	1.99
44666514--44666618	52	2.0	52	100	0	210	37	20	13	28	1.91
44668049--44668271	104	2.2	103	93	2	376	17	19	31	31	1.95
44668190--44668341	71	2.1	72	92	1	252	23	17	29	30	1.97
44675600--44675822	104	2.2	103	92	2	367	17	18	31	31	1.95
44675742--44675892	71	2.1	72	90	2	234	23	16	29	30	1.96
44677205--44677247	22	1.9	23	95	4	79	23	55	0	20	1.43
44684991--44685054	21	3.0	21	69	24	53	59	4	3	32	1.34
44685024--44685084	30	2.1	27	85	8	77	55	3	6	34	1.42
44686778--44687017	45	5.4	43	78	5	203	27	21	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44686812--44687065	133	1.9	134	80	4	298	26	22	20	31	1.98
44687005--44687107	44	2.3	45	81	3	127	25	19	22	33	1.97
44687007--44687901	177	5.1	177	83	3	1097	26	24	18	30	1.98
44687648--44687765	44	2.6	45	76	7	116	25	22	19	33	1.97
44689156--44689222	13	5.1	12	77	16	62	11	5	0	82	0.84
44689156--44689207	27	1.9	27	84	7	70	9	7	0	82	0.84
44692563--44692608	19	2.4	19	89	7	67	45	13	21	19	1.84
44699916--44699954	18	2.2	18	86	9	53	61	0	7	30	1.24
44720792--44720860	34	2.0	34	91	0	111	42	10	18	28	1.83
44724944--44725003	30	2.0	30	83	6	77	31	23	3	41	1.71
44732408--44732467	30	2.0	30	90	0	93	28	25	5	41	1.76
44735041--44735106	25	2.6	25	77	13	64	60	1	3	34	1.21
44735708--44735741	17	1.9	18	88	5	52	38	5	5	50	1.51
44738468--44738506	20	2.0	20	100	0	78	35	12	20	30	1.90
44738557--44738725	49	3.5	48	89	4	232	30	21	20	27	1.98
44738557--44738725	24	7.0	24	87	3	232	30	21	20	27	1.98
44746666--44746715	25	2.0	25	96	0	91	22	26	24	28	1.99
44746752--44746818	20	3.3	20	89	0	107	35	10	20	32	1.87
44746867--44747227	24	15.0	24	90	0	535	29	21	20	28	1.98
44755274--44755331	20	2.9	20	94	0	98	36	10	20	32	1.87
44755383--44755537	24	6.4	24	90	2	229	30	20	21	27	1.98
44763273--44763488	47	4.6	48	81	8	232	22	31	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44763263--44763536	47	5.8	45	76	15	220	22	29	19	27	1.98
44763850--44763908	30	2.0	30	89	0	91	27	27	15	30	1.96
44766507--44766558	27	1.9	27	84	0	68	44	17	5	32	1.72
44779973--44780012	21	2.0	20	90	9	64	40	45	5	10	1.60
44780238--44780318	22	3.7	21	85	3	99	37	25	22	14	1.93
44780724--44780778	27	2.0	27	85	0	74	30	14	18	36	1.91
44782249--44782294	24	1.9	24	81	0	56	17	36	4	41	1.69
44784187--44784243	22	2.6	22	71	0	60	35	22	24	17	1.95
44784269--44784351	43	1.9	43	92	0	139	25	31	20	22	1.98
44784649--44784734	27	3.2	27	84	0	109	29	5	25	39	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352