Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  15  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4698056--4698153
33
2.9
33
84
7
108
36
22
10
30
1.87
4698368--4698523
41
3.8
41
89
6
235
28
22
20
28
1.98
4699006--4699053
24
2.1
23
85
11
64
31
14
0
54
1.41
4707314--4707380
27
2.7
24
79
9
71
32
1
1
64
1.12
4708509--4708571
29
2.1
28
85
11
81
26
3
3
66
1.22
4708658--4708698
20
2.2
18
86
8
55
56
9
0
34
1.32
4711470--4711530
26
2.4
25
81
7
70
27
0
3
68
1.05
4711892--4711978
45
2.0
44
84
11
115
52
10
8
28
1.63
4715320--4715345
2
13.0
2
100
0
52
50
0
50
0
1.00
4718596--4718628
17
2.0
17
88
5
50
54
15
0
30
1.41
4720929--4721014
27
3.2
26
69
12
66
34
39
10
15
1.81
4720970--4721048
33
2.6
29
73
24
74
37
40
3
17
1.68
4721011--4721099
30
3.0
30
73
15
76
42
35
3
17
1.66
4721042--4721117
36
2.1
36
82
4
91
43
35
3
17
1.67
4721395--4721426
15
2.1
15
94
0
55
34
43
12
9
1.75
4722804--4722838
16
2.2
16
90
10
54
62
0
0
37
0.95
4723653--4723692
18
2.2
19
86
13
57
70
0
0
30
0.88
4724543--4724696
59
2.6
59
79
9
163
24
12
9
54
1.66
4724543--4724688
58
2.5
59
78
8
147
23
12
9
54
1.66
4725269--4725339
28
2.5
28
81
9
81
56
8
11
23
1.62
4730640--4730688
23
2.3
20
79
10
53
36
2
4
57
1.30
4739961--4740001
19
2.2
19
86
8
57
31
2
4
60
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4741361--4741441
24
3.5
24
62
13
60
49
3
3
43
1.38
4741717--4741758
15
2.6
16
82
14
50
38
7
9
45
1.64
4753884--4753939
27
2.0
28
83
10
71
48
1
16
33
1.56
4759200--4759254
19
2.9
18
70
19
58
38
7
0
54
1.28
4759805--4759859
19
2.8
19
73
13
58
34
1
1
61
1.17
4763051--4763093
2
21.5
2
100
0
86
0
0
48
51
1.00
4770962--4771001
19
2.1
19
85
0
53
57
2
2
37
1.26
4771009--4771066
27
2.1
27
84
6
73
46
1
6
44
1.40
4773467--4773520
18
3.2
17
80
12
58
46
9
0
44
1.35
4773465--4773508
18
2.5
17
82
7
61
47
6
0
45
1.29
4778220--4778282
23
2.7
23
79
11
67
55
1
0
42
1.09
4778214--4778281
11
6.0
11
70
16
50
55
1
1
41
1.18
4787835--4787893
29
2.1
27
87
12
84
52
1
1
44
1.21
4787827--4787912
36
2.4
35
79
14
95
54
1
1
43
1.15
4792153--4792209
23
2.5
22
81
15
64
63
5
3
28
1.33
4792155--4792216
23
2.8
22
79
15
58
64
4
3
27
1.29
4792169--4792223
23
2.4
22
81
6
56
69
5
1
23
1.19
4792271--4792315
13
3.0
16
75
18
51
42
0
0
57
0.98
4796265--4796297
5
6.6
5
100
0
66
0
18
0
81
0.68
4803515--4803560
15
3.1
15
84
6
67
63
0
0
36
0.95
4803515--4803580
14
4.7
14
81
10
73
57
0
0
42
0.98
4803528--4803580
13
3.9
13
79
20
56
56
0
0
43
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4803523--4803575
16
3.5
15
77
15
56
58
0
0
41
0.98
4815004--4815044
20
2.0
20
100
0
82
19
14
19
46
1.84
4816937--4816972
13
2.8
14
84
16
51
27
25
0
47
1.52
4816924--4816964
18
2.2
19
87
12
59
29
24
0
46
1.53
4817065--4817161
27
3.6
27
71
25
89
41
38
3
17
1.65
4817615--4817658
15
2.9
15
75
0
52
52
15
2
29
1.55
4819568--4819606
16
2.4
17
87
12
55
53
0
2
43
1.14
4823831--4823933
51
2.0
51
90
3
163
27
16
22
33
1.95
4827987--4828042
21
2.6
21
72
10
60
35
0
3
60
1.14
4830745--4830963
111
2.0
111
100
0
438
36
16
20
26
1.94
4838340--4838369
15
1.9
16
93
6
53
20
3
10
66
1.35
4838421--4838473
16
3.2
16
94
5
97
24
0
37
37
1.56
4838454--4838544
45
2.0
45
85
2
121
27
6
28
37
1.82
4838823--4838887
15
4.2
16
72
20
50
46
3
1
49
1.27
4838689--4838976
119
2.4
119
87
5
418
49
4
2
43
1.35
4871657--4871681
6
4.2
6
100
0
50
0
16
0
84
0.63
4872384--4872451
31
2.4
26
76
21
66
38
4
2
54
1.36
4874666--4874709
20
2.2
20
91
0
70
38
20
11
29
1.87
4875492--4875560
21
3.4
20
72
20
63
37
1
5
55
1.33
4875547--4875577
15
2.1
14
94
5
53
35
3
6
54
1.42
4875743--4875814
24
3.2
23
74
14
69
50
4
11
34
1.57
4876697--4876739
12
3.5
12
81
6
59
46
4
13
34
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4876692--4876743
25
2.1
25
100
0
104
44
3
17
34
1.67
4876692--4876739
12
3.8
12
78
8
51
45
4
16
33
1.67
4882348--4882416
21
3.4
21
73
15
72
37
1
5
55
1.33
4882345--4882433
13
6.5
14
71
21
55
37
2
5
55
1.36
4883475--4883517
12
3.5
12
81
6
59
46
4
13
34
1.65
4883470--4883521
25
2.1
25
100
0
104
44
3
17
34
1.67
4883470--4883517
12
3.8
12
78
8
51
45
4
16
33
1.67
4887020--4887057
19
2.0
19
94
0
67
34
5
23
36
1.78
4894657--4894708
27
1.9
27
88
0
77
38
3
1
55
1.29
4894657--4894718
27
2.3
27
83
5
72
41
3
1
53
1.27
4901992--4902020
13
2.1
14
93
6
51
0
10
0
89
0.48
4902421--4902458
15
2.5
15
91
0
58
65
2
2
28
1.19
4919616--4919677
26
2.4
26
97
0
115
27
8
8
56
1.56
4919754--4919801
17
2.9
17
76
14
55
72
0
0
27
0.84
4922217--4922255
15
2.5
16
87
4
53
38
0
0
61
0.96
4930888--4930914
12
2.2
12
100
0
54
92
0
7
0
0.38
4931175--4931202
5
5.6
5
100
0
56
78
0
21
0
0.75
4937876--4938014
65
2.2
64
96
1
251
41
16
5
35
1.72
4939970--4940004
16
2.3
16
90
9
56
62
5
0
31
1.18
4941515--4941551
18
2.1
18
100
0
74
24
5
21
48
1.71
4944862--4944910
19
2.6
19
100
0
98
34
0
0
65
0.93
4946375--4946413
10
3.9
10
80
12
53
64
0
0
35
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4946369--4946430
19
3.3
18
82
14
81
61
0
1
37
1.06
4947094--4947120
11
2.5
11
100
0
54
77
0
0
22
0.76
4947277--4947319
10
4.2
10
88
5
68
76
0
0
23
0.78
4947277--4947319
21
2.1
20
91
4
68
76
0
0
23
0.78
4948991--4949019
2
14.5
2
100
0
58
0
48
0
51
1.00
4949252--4949291
19
2.1
19
100
0
80
20
30
0
50
1.49
4954781--4954820
8
5.1
8
84
6
55
82
0
5
12
0.82
4954781--4954814
16
2.1
16
100
0
68
82
0
5
11
0.83
4954853--4954882
13
2.3
13
94
0
51
60
6
3
30
1.39
4954873--4954914
19
2.2
19
91
4
66
33
9
7
50
1.62
4963070--4963104
16
2.2
16
90
10
54
40
2
0
57
1.14
4963286--4963346
28
2.2
27
77
8
70
60
18
4
16
1.52
4963381--4963428
24
2.0
23
84
11
62
41
2
4
52
1.32
4968307--4968341
16
2.2
16
90
10
54
42
0
2
54
1.15
4969870--4969909
20
2.0
20
90
0
62
27
10
12
50
1.72
4969855--4969921
34
1.9
35
90
3
109
31
8
13
46
1.74
4969849--4969925
14
5.0
15
71
20
52
33
9
14
42
1.77
4971309--4971379
35
2.0
37
94
5
128
52
16
2
28
1.58
4971349--4971416
27
2.5
28
80
7
77
54
20
2
22
1.58
4972910--4972942
15
2.1
16
94
5
59
60
6
18
15
1.54
4975343--4975394
25
2.1
25
85
7
70
40
11
25
23
1.88
4982153--4982187
16
2.2
16
90
10
54
40
2
0
57
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4982369--4982429
28
2.2
27
77
8
70
60
18
4
16
1.52
4982464--4982511
24
2.0
23
84
11
62
41
2
4
52
1.32
4993705--4993778
37
2.0
37
97
0
139
52
24
12
10
1.70
4993888--4994015
61
2.1
61
97
1
238
45
17
14
21
1.85
4993891--4993989
33
3.2
33
61
19
84
46
16
16
21
1.84
4997190--4997243
24
2.2
24
90
0
81
48
18
3
29
1.65
4998911--4998968
30
1.9
30
93
6
100
36
0
0
63
0.94
4998911--4998970
29
2.2
28
85
8
79
35
0
0
65
0.93
4999273--4999362
15
5.9
14
77
13
81
76
0
22
1
0.85
4999272--4999362
24
3.8
25
75
22
81
75
0
23
1
0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352