genome.fa.s11.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  120  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38475873--38475935	19	3.3	19	68	12	56	15	33	17	33	1.92
38475857--38475917	20	3.1	20	66	4	61	19	31	21	27	1.97
38475757--38476011	117	2.2	117	90	0	393	20	31	17	30	1.95
38476280--38476312	2	16.5	2	93	0	57	0	3	48	48	1.17
38481124--38481354	39	5.9	39	87	2	295	18	21	29	30	1.97
38485705--38485742	20	1.9	20	88	0	58	36	31	13	18	1.89
38496028--38496081	25	2.2	24	83	3	72	31	22	25	20	1.98
38496034--38496080	24	1.9	25	91	4	78	29	21	27	21	1.98
38499824--38499879	21	2.6	22	80	2	69	19	35	28	16	1.93
38503965--38504099	43	3.1	44	82	6	175	25	17	28	28	1.98
38503982--38504099	45	2.7	43	82	6	157	27	17	27	27	1.98
38505187--38505464	27	10.3	27	82	6	294	28	19	9	42	1.82
38505187--38505464	54	5.1	54	87	1	371	28	19	9	42	1.82
38505492--38505568	27	2.9	27	84	0	100	40	22	10	27	1.86
38505550--38505780	27	8.6	27	89	0	336	35	20	20	23	1.96
38505496--38505772	81	3.4	82	86	2	276	35	20	18	25	1.95
38505998--38506080	27	3.1	26	89	5	121	19	22	21	36	1.95
38506177--38506226	22	2.3	22	78	0	55	22	26	20	32	1.98
38506383--38506464	27	3.1	27	84	5	87	15	21	24	37	1.93
38506582--38506707	6	20.8	6	79	13	134	20	18	12	48	1.80
38507437--38507645	38	5.5	39	90	2	293	19	20	26	33	1.96
38507426--38507645	76	2.9	76	88	1	334	20	20	26	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38507638--38507767	45	2.9	45	90	2	199	22	23	28	26	1.99
38509360--38509397	20	1.9	20	88	0	58	36	15	2	44	1.61
38529133--38529214	41	2.0	41	81	11	96	24	20	26	28	1.99
38542323--38542384	30	2.1	30	93	0	106	25	32	19	22	1.97
38545209--38545390	79	2.3	81	81	7	221	24	22	27	25	2.00
38545209--38545392	40	4.6	39	80	9	194	24	22	27	25	2.00
38545209--38545425	79	2.7	78	76	12	219	25	21	27	25	2.00
38547732--38547771	20	2.0	20	100	0	80	30	15	10	45	1.78
38548624--38548670	23	2.0	23	84	8	60	31	10	8	48	1.68
38551386--38551427	15	2.9	14	86	6	57	2	28	0	69	1.01
38552604--38552690	41	2.1	41	97	0	165	35	19	9	35	1.84
38552842--38552971	41	3.1	41	71	18	142	16	26	9	47	1.76
38552818--38552989	83	2.1	83	94	0	299	14	26	11	47	1.77
38552830--38552959	42	3.1	42	66	25	112	13	28	10	47	1.75
38558043--38558154	55	2.0	55	96	0	206	36	9	11	41	1.75
38570449--38570523	38	2.0	38	84	5	98	38	22	6	32	1.80
38570445--38570529	18	4.5	19	78	8	93	41	22	5	30	1.77
38570700--38570754	23	2.3	24	84	3	67	36	20	20	23	1.95
38570711--38570764	24	2.3	23	83	3	72	35	20	25	18	1.95
38585721--38585751	15	2.1	15	100	0	62	38	6	25	29	1.81
38587428--38587485	19	3.0	19	84	2	71	39	22	5	32	1.76
38587654--38587748	24	3.9	24	82	6	95	34	20	21	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38589574--38589688	60	1.9	60	80	3	133	35	3	10	50	1.54
38589675--38589713	14	2.8	14	96	0	69	51	7	23	17	1.71
38591760--38591935	40	4.4	41	87	4	252	26	29	22	21	1.99
38591760--38591935	80	2.2	80	91	0	280	26	29	22	21	1.99
38604545--38604580	9	4.0	9	96	0	63	55	11	25	8	1.62
38605154--38605687	47	11.3	47	94	1	897	29	30	8	31	1.87
38621807--38621832	11	2.4	11	100	0	52	80	0	0	19	0.71
38628266--38628435	56	3.1	55	88	5	270	26	7	17	49	1.72
38629509--38629699	50	3.8	50	82	3	224	26	13	27	32	1.94
38629505--38629699	100	1.9	100	86	3	275	27	14	26	31	1.95
38629897--38629926	16	1.9	15	93	6	51	43	0	23	33	1.54
38633838--38634339	126	4.0	126	83	3	604	27	18	15	38	1.91
38634393--38634487	30	2.9	33	74	17	99	43	17	0	38	1.50
38637132--38637304	94	1.8	94	90	2	276	28	19	28	22	1.98
38637135--38637352	47	4.7	47	77	11	191	30	19	27	22	1.98
38637139--38637352	94	2.3	94	82	5	254	30	20	27	21	1.98
38646104--38646163	30	2.0	30	100	0	120	26	23	30	20	1.98
38646134--38646299	46	3.6	47	81	11	175	29	20	28	21	1.98
38646134--38646345	47	4.6	47	81	8	195	30	19	27	22	1.98
38658254--38658351	27	3.5	28	87	2	126	26	12	28	32	1.92
38658282--38658364	27	3.0	27	84	5	78	30	10	25	33	1.90
38661868--38661993	39	3.2	39	93	0	198	23	21	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38661868--38662011	39	3.7	39	90	1	146	22	22	28	25	1.99
38661868--38662011	78	1.8	78	83	2	191	22	22	28	25	1.99
38661868--38662031	78	2.1	78	82	5	190	22	22	28	26	1.99
38676959--38677047	21	4.4	20	68	16	58	41	6	28	23	1.79
38676977--38677042	18	3.5	18	67	18	53	43	4	28	22	1.73
38676983--38677063	39	2.1	39	97	0	153	46	4	24	23	1.72
38677001--38677065	21	3.2	21	68	12	64	52	4	21	21	1.65
38676994--38677079	39	2.2	39	82	0	100	55	3	24	16	1.56
38682633--38682756	36	3.4	36	82	7	144	16	14	30	38	1.88
38685801--38685917	46	2.5	46	86	6	148	23	33	16	27	1.95
38686350--38686415	30	2.3	30	84	5	82	31	21	15	31	1.94
38689108--38689269	80	2.0	80	100	0	324	14	20	33	30	1.93
38689582--38689644	27	2.3	27	84	10	92	26	25	7	39	1.83
38689636--38689805	27	6.3	26	78	8	128	37	22	10	29	1.88
38689643--38689798	54	2.9	54	81	3	154	39	20	10	29	1.85
38689676--38689840	27	6.1	28	80	10	146	40	21	7	30	1.81
38689676--38689825	81	1.9	81	83	5	196	41	21	8	29	1.81
38689676--38689883	54	3.8	54	80	4	177	40	20	8	30	1.81
38689676--38689889	27	7.9	26	79	8	124	40	19	8	31	1.82
38689970--38690022	25	2.0	25	82	13	63	33	16	20	28	1.95
38689930--38690022	27	3.5	27	72	13	70	37	19	18	24	1.94
38690818--38690887	25	2.8	24	91	4	104	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38690817--38690900	25	3.4	24	83	8	98	27	23	22	26	2.00
38691107--38691189	31	2.7	31	96	3	152	28	16	26	27	1.97
38695723--38695762	21	1.9	21	89	0	62	20	25	40	15	1.90
38696029--38696058	12	2.5	12	94	0	51	3	33	23	40	1.71
38696966--38697138	46	3.8	44	80	14	172	23	30	18	27	1.98
38701649--38701750	49	2.1	49	90	0	159	27	23	23	25	2.00
38712578--38712644	28	2.4	28	77	5	73	23	2	2	70	1.15
38712588--38712626	16	2.4	16	82	0	51	25	2	5	66	1.25
38714084--38714116	15	2.2	15	89	10	50	27	6	12	54	1.60
38719645--38719785	42	3.3	44	77	10	132	25	14	26	33	1.95
38719669--38719785	42	2.7	43	81	6	139	24	14	25	35	1.94
38719645--38719803	43	3.7	43	75	10	146	24	16	27	32	1.96
38722338--38722369	15	2.0	17	88	11	50	43	31	0	25	1.55
38730962--38731013	18	2.9	18	77	5	61	26	15	13	44	1.84
38744404--38744442	18	2.2	18	85	0	51	64	2	0	33	1.08
38746797--38747086	50	5.8	50	80	5	282	32	26	16	24	1.96
38746850--38747035	101	1.8	101	89	2	293	29	25	19	25	1.99
38755120--38755344	40	5.7	40	81	6	224	24	28	21	25	1.99
38755087--38755344	40	6.5	38	78	9	200	24	27	21	26	1.99
38755276--38755353	40	1.9	41	82	10	97	26	28	20	24	1.99
38763015--38763236	40	5.6	39	81	6	207	25	27	21	25	1.99
38763168--38763245	40	1.9	41	82	10	97	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38765113--38765288	40	4.4	40	90	2	275	23	22	28	24	1.99
38765515--38765558	22	2.0	22	82	8	54	31	11	13	43	1.80
38772272--38772405	40	3.4	39	87	6	198	23	22	29	24	1.99
38772632--38772675	22	2.0	22	82	8	54	31	11	13	43	1.80
38774978--38775007	16	1.9	15	93	6	51	33	23	0	43	1.54
38776806--38776971	40	4.2	40	92	2	264	22	22	27	27	1.99
38778266--38778499	50	4.6	51	73	8	154	32	24	17	25	1.96
38782892--38782947	26	2.2	26	93	0	94	28	26	19	25	1.99
38789333--38789379	23	2.1	23	92	4	78	68	0	21	10	1.20
38789832--38789926	40	2.4	39	94	1	163	48	6	25	20	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352